Detail information of Os05g0125000_circ_g.4


General Information
CircRNA Name Os05g0125000_circ_g.4
ID in PlantcircBase osa_circ_026388
Alias NA
Organism Oryza sativa
Position chr5: 1427935-1431239  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os05g0125000
Parent gene annotation SUMO (small ubiquitin-related modifier) E3-ligase, Abiotic stres
s response, Stress adaptation (Os05t0125000-01)
Parent gene strand +
Alternative splicing Os05g0125000_circ_g.1 Os05g0125000_circ_g.2 Os05g0125000_circ_g.3 Os05g0125000_circ_g.5 Os05g0125000_circ_g.6 Os05g0125000_circ_g.7 Os05g0125000_circ_g.8 Os05g0125000_circ_g.9 Os05g0125000_circ_g.10
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os05t0125000-01:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAACATTAGTTTCATTTTATGTTCAGGTATTTCTGTACGAGTAGTGACTAGACCTGGTTCTCAA
TTACTAGGGATAAATGGACGGGATGATGGTCCACTGgataaactggcatactttagaataaagg
aactcaaagatatattaaatcagctcggcttaccaaagcaaggaaagaagcaggtcagcaaatt
ttgttcct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATAAACTGGCATACTTTAGAATAAAGGAACTCAAAGATATATTAAATCAGCTCGGCTTACCAA
AGCAAGGAAAGAAGCAGGTCAGCAAATTTTGTTCCTGTTAATCTTTTTTACATCACCATCTATC
AGACGGCAGTTTCAACTAAATGAGAATATGAGATGTAAGCTTTTGAGGTGAACCGGTAGTATAG
ACTCTCATAATACAGCATTGGTGGGATCTTTGGTGGTAATGGTGGTCTGATATGAAGAGCTCAT
TTCAATGAGCTATTTCTTAGCTCGTTGTCTTTTGTTTTCTGATATACTTCTCTTATATTCTCAC
AGGATCTTATTGATAGGGTGTTGGCACTCTTAACAGATGAGCAAGGTATGCATTTGTCTGTTGT
TTCTGCTTCCCTGGTCTATGTTAGTACCTTACATATCAAGTCATGTACTGACATGCTAAAATTT
GCACTGTTTCATTCCCTGTATTTGTTTCAGTGGTGTCTAATCCATCAGCATGAACGGATGATGC
CTTTTCTATTTTCTAGTCTTAAAAACCTAAATTTGTGTGTTCTTTTCTTGTTGCAGGTCAAAGG
CATCATGGATGGGGAAGGAAAAATTCTCTCACCAAGGAGGCAGTGGCAAAAATTGTTGATGATA
CATACAGGTTAAATTTCATTGTTTCATAAAATTGACCATGTGGCATAATAGTGTGGATATTTGA
GATGAAATCAGTGGTGCTTCTCTTTTGAGATCTTTATGCCTTCATTAGCAGGAAAATGCAAATC
CAATGTGCTCCTGATCTAGCCACCAGGAGCCACAGCGGATCAGATTTCAGTTTCAGGCCTATAG
AGGAAGCCTATGACTCTTTCCAGCCAGAGGCCAAAGTTCGCTGCATTTGCAGTAGCACAATGGT
TAATGACAGCATGATCCAGGTATTATAACATTTTTTATTTCTTACATTCCTTTCTTTTTGAAAG
ATCGTTACGGCATGTGCCATCCCTCTTTTTATTATTATTATTTAAATCATGTATCATGTCTTTC
TGCAGTGTGAAGATCAGCGATGCCAAGTGTGGCAACATTTGAATTGTGTACTCATTCCAGATAA
GCCTGGGGAGAGCGCTGAAGTTCCACCCGTTTTCTACTGTGAATTATGCCGACTGAGTCGGGCA
GACCCGTATGTCTTTCTACTATTTGATTTTTCTTTGGGTGGGGTTAAGCAGGTAAATCTGTGGT
GGAAACCACTGCATTTTTTAAAGAAAAATCAAAACAAAAACATATTTAGGGAAGGTGATAGTAC
ATGCTCTTGTAATTCCATGTGCAAACTTGATTTTGCTTGTGAGATATGAAAATGGAAAACAGTG
AACGAAAAGACAAACATCAAGAATTCAAGATGTGTGGCTTTTACCTTGTTGTTTCTCAATTTCA
TATCTCATTAATGAAATTAGTTTTGATCTTCTGATTTCACACAGTTTAATAATGTATCACCTCC
TCTGTGCATGAGATTACTTGGGGATTTTTTGAAACTTGTACAAAATGGTTTCCAGTTTATCACC
ATATATTCTACAAAATGGGATTAAGTTTTGATTTGCTGCAGCTACATGCTTTGAATTTGCAGAT
TTTGGGTCACTGCTGGAAATCCATTACTCCCAGTGAAATTCGTGTCATCTGGTGTTACAAATGA
TGGGTGGGTATAAATGGATTCTTCTTACTGGCAACATTTTAACTGATAATAATCCGTGGCTGAC
TATTTATTTATTATTGATGCTCTTCTTTCTCTATTTCGTCTTTGCAAAAATGGCAGTTTTTCCA
ACACCTTTATTTACATTCACTGGTAGCTCGCTAGGCTCTCCCTTTCAGTCACTCCTTCAAATAG
AAAAACAGTTCATGACACTTTTTTCATCATGCCTCTTAAATTTTTTTCATTGTTGCACAATCAT
AGAATGTTTACAGTTACACTACGGCTCATAATTACATACGTAGGTAAAATCCATTGTTGATACT
TGATAGTCATGAGTTTACTTTGTCACATGCCTCTCCATATATTGTACAAGGCTCTTCTTAGTAG
TTACTTGTCACATTATAATAATCCTTGTAACATATGGTAAATTCTCCAGTTAACGTTATCTGTG
ACTATACAACATTTTGTCTAGCACATTTATGGACAACAGTATGCTTAGAAGGTTCAATTGCTAT
TCTATTTACTCTAAATTGTCTCGTTTAATGATCATGTGTTACTTGTGATGTATGACATCCTTAT
TAATCCTCTCATATCTTTAGAACAAGTGTACCTCAAAGTGTGGAGAAAAGCTTCCAGCTTTCTC
GATCAGATAGAGAAACTGTCCAGAGACAAGAATATGACCTCCAGGTTTGTTCTATTCTACAAAG
CTAAGTTAAATATGCTTGAGTTTTGGAGTCCTCAGTTCAACTTAATATTGCGTCAATATTGTAA
TATCATAATGCTCTTGAGTACCAAGTAAGAAACCATATGGGTTTATGCCACTCAGTTGTTTAGG
ACGTTCATAAGTTTTTTTGTTGATTTTAGGCTTATATGAATAGCTCTTATCAATGGTGAAGGCA
AACCTTTGACCAATTCATTTTCCTTTTGTAACATGGAATTCACACAATATGAGTAATGCGTCTA
TTGTGCAATTGTTTTCATTGGTTGTATTGTGAAGACAAAGCACTGTGGATAAGTTATGTTCTCT
ATGTAACATGAAATATTCTTAATTTGTTCTGTTACAAGCCAACTGTATTTACTTTGTGTTGTTG
CAAATTTTCATCTGTACCATGTGGATGCTACTTGCTAGCATTGTACAAAGAAATTTTCTTTGTG
CAAAAGTTTGAATTTATGTGGACCAGGCTGATTTCGAATTCATTTTGTCCAATGATGAAACATG
GTTTAATTCATTTCGTATTGTTTTTTTCCTTGCATAAATCTAAGATATGCATGCATATATTGTT
TGTTTATACTATCTGAAGCAGTGAATGTGTTGACAGGTTTGGTGCATGCTTTTGAATGACAAAG
TTCAGTTCAGGATGCAGTGGCCCCAATATGCAGAATTGCATGTTAATGGTATTGTTGATGATTT
TGTAGCACAATTTGATTCACTTTCATATTTGAATTGCATCCCAGCTTAAATATTGTCTTATATG
TTGTGCAGTTATGCTGTTGTTGGTTAATACTTCACGTTGGTCTTTCTTTAAAATAAGTTACTAT
CTGTGTAACATTAGTTTCATTTTATGTTCAGGTATTTCTGTACGAGTAGTGACTAGACCTGGTT
CTCAATTACTAGGGATAAATGGACGGGATGATGGTCCACTG
Conservation Information
Conserved circRNAs NA
PMCS 0.113660862
Functional Information
Coding potential Y
Potential coding position 1428695-1431236(+)
1427949-1431189(-)
Potential amino acid sequence MQIQCAPDLATRSHSGSDFSFRPIEEAYDSFQPEAKVRCICSSTMVNDSMIQCEDQRCQVWQHL
NCVLIPDKPGESAEVPPVFYCELCRLSRADPFWVTAGNPLLPVKFVSSGVTNDGTSVPQSVEKS
FQLSRSDRETVQRQEYDLQVWCMLLNDKVQFRMQWPQYAELHVNGISVRVVTRPGSQLLGINGR
DDGPLDKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQRHHGWGRKNSLTKEAV
AKIVDDTYRKMQIQCAPDLATRSHSGSDFSFRPIEEAYDSFQPEAKVRCICSSTMVNDSMIQCE
DQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSRADPFWVTAGNPLLPVKFVSSGVTNDG
TSVPQSVEKSFQLSRSDRETVQRQEYDLQVWCMLLNDKVQFRMQWPQYAELHVNGISVRVVTRP
GSQLLGINGRDDGPLDKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQRHHGWG
RKNSLTKEAVAKIVDDTYRKMQIQCAPDLATRSHSGSDFSFRPIEEAYDSFQPEAKVRCICSST
MVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSRADPFWVTAGNPLLPVK
FVSSGVTNDGTSVPQSVEKSFQLSRSDRETVQRQEYDLQVWCMLLNDKVQFRMQWPQYAELHVN
GISVRVVTRPGSQLLGINGRDDGPLDKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLTD
EQGQRHHGWGRKNSLTKEAVAKIVDDTYRKMQIQCAPDLATRSHSGSDFSFRPIEEAYDSFQPE
AKVRCICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSRADPFWV
TAGNPLLPVKFVSSGVTNDGTSVPQSVEKSFQLSRSDRETVQRQEYDLQVWCMLLNDKVQFRMQ
WPQYAELHVNGISVRVVTRPGSQLLGINGRDDGPL(+)
MPVYPVDHHPVHLSLVIENQV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017