Detail information of AT2G05710_circ_g.12


General Information
CircRNA Name AT2G05710_circ_g.12
ID in PlantcircBase ath_circ_012898
Alias 2:2143936-2144478
Organism Arabidpsis thaliana
Position chr2: 2143936-2144478  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G05710
Parent gene annotation Aconitate hydratase 3, mitochondrial
Parent gene strand +
Alternative splicing AT2G05710_circ_g.6 AT2G05710_circ_g.7 AT2G05710_circ_g.8 AT2G05710_circ_g.9 AT2G05710_circ_g.10 AT2G05710_circ_g.11 AT2G05710_circ_g.13 AT2G05710_circ_g.14 AT2G05710_circ_g.15 AT2G05710_circ_g.16 AT2G05710_circ_g.17
Support reads 2/1/2/1/1/1
Tissues seedling;root;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G05710.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGATCCCTTTTTCAAAAACTTGCCTCTGTAGGTTAAGCCTTGGATAAAGACAAGTCTTGCTCC
AGGCTCAGGAGTTGTTACAAAATACTTATTAAAGAGgccacatgatcgtgttactttgaaggaa
atgaaagctgactggcattcatgtcttgacagtaaagttgggttcaaggtatgtaactggatgt
ttcacttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCACATGATCGTGTTACTTTGAAGGAAATGAAAGCTGACTGGCATTCATGTCTTGACAGTAAA
GTTGGGTTCAAGGTATGTAACTGGATGTTTCACTTTGTGGATGTCTAATCTCTTAACCATTTAC
TCGTTCTATAGACTGGGTTGTTGGTGCACATTTTGGAAATCAATGTTTATTTCTGAATATTGCT
ATTCATTCTCCGCAGGGTTTTGCTATACCTAAAGAGGCACAAGAAAAAGTGGTAAATTTTTCGT
TCGATGGACAACCAGCAGAGCTTAAACATGGAAGTGTGGTGATTGCTGCAATCACAAGCTGTAC
TAATACATCAAATCCCAGCGTCATGCTTGGTGCTGGTCTTGTTGCAAAGAAGGCTTGTGACCTT
GGGCTACAGGTTGGTTTCACGAGAGCAAACTAGAAATCTATCTGATGCCTCGACATTTTCTGAT
CCCTTTTTCAAAAACTTGCCTCTGTAGGTTAAGCCTTGGATAAAGACAAGTCTTGCTCCAGGCT
CAGGAGTTGTTACAAAATACTTATTAAAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.306653219
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020