Detail information of AT2G03140_circ_g.1


General Information
CircRNA Name AT2G03140_circ_g.1
ID in PlantcircBase ath_circ_012643
Alias NA
Organism Arabidpsis thaliana
Position chr2: 948051-948291  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method KNIFE, PcircRNA_finder, circRNA_finder, find_circ
Parent gene AT2G03140
Parent gene annotation alpha/beta-Hydrolases superfamily protein
Parent gene strand +
Alternative splicing AT2G03140_circ_g.2 AT2G03140_circ_g.3
Support reads 2
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03140.8:1
AT2G03140.10:1
AT2G03140.2:1
AT2G03140.3:1
AT2G03140.11:1
AT2G03140.5:1
AT2G03140.12:1
AT2G03140.7:1
AT2G03140.4:1
AT2G03140.1:1
AT2G03140.9:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTATTCATTCTTGTTATGCTGTGGGGAAAGAGAGTACGGAAGTACGAAAACCCATTCAAGCAA
TATGGGCTTGATTTAAAGGCATCAAACAAAGAAAAGggctgtgggctttattggcatggtgctc
gttttatggtcaccggttgtgattccattgcttccaacacttctccagaactggtctacaagta
atccttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCTGTGGGCTTTATTGGCATGGTGCTCGTTTTATGGTCACCGGTTGTGATTCCATTGCTTCCA
ACACTTCTCCAGAACTGGTCTACAAGTAATCCTTCTAGAGTGGCAGAACTAGCTAGTGTAGTCG
GTCTCTATGTTGCTGTATTCATTCTTGTTATGCTGTGGGGAAAGAGAGTACGGAAGTACGAAAA
CCCATTCAAGCAATATGGGCTTGATTTAAAGGCATCAAACAAAGAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.090248963
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017