Plant Circular RNA Database

Detail information of Os01g0861900_circ_ag.1

			
						 General Information
					
						CircRNA Name
						Os01g0861900_circ_ag.1
					
						ID in PlantcircBase
						osa_circ_004918
					
						Alias
						Os_ciR2751
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 37308424-37312481  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							Os01g0862000_circ_g.1 Os01g0862000_circ_g.2 Os01g0862000_circ_g.3 Os01g0862000_circ_g.4 Os01g0862000_circ_g.5 Os01g0862000_circ_g.6 Os01g0862000_circ_g.7 Os01g0862000_circ_g.8 						
					
						Support reads
						4
					
						Tissues
						root
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os01g0861900_circ_ag.1
ID in PlantcircBase	osa_circ_004918
Alias	Os_ciR2751
Organism	Oryza sativa
Position	chr1: 37308424-37312481 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ag-circRNA
Identification method	find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	Os01g0862000_circ_g.1 Os01g0862000_circ_g.2 Os01g0862000_circ_g.3 Os01g0862000_circ_g.4 Os01g0862000_circ_g.5 Os01g0862000_circ_g.6 Os01g0862000_circ_g.7 Os01g0862000_circ_g.8
Support reads	4
Tissues	root
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GAAGGAAGACTTGCCAGCGTTTGCAAAACCCGTTCAACTTCACCATCACTGTTATCTGTTTCTA
CTTGACCAGGAACAGAATCAAGCACCCAAAGCTGTTggttcgacgatctttcaggtacaatctt
caaagctttcatcatctccgatgctcccttcgtgtaagatctgcttcaccttgttcaagatctc
ctgcatct

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GGTTCGACGATCTTTCAGGTACAATCTTCAAAGCTTTCATCATCTCCGATGCTCCCTTCGTGTA
AGATCTGCTTCACCTTGTTCAAGATCTCCTGCATCTGCTTTCTGGAATGGAGAGGGCAAGGGTA
CATGCACGCGAACTCCAGCTGACCATCTCTGATGGAGTCAAACAATCCGATGGATGGCCCGACG
CCATGCACGGTGGCGCAGCACACGAATTCCTCCACGCCGGCCTTGCTCTGCAGATCGGAGAGGT
CGTACACCACCGGCTCCTCGAACACGGAGACGACCGCCGTCCGGAGCGCAGAGCCCGTCGTCAG
CTGCGGGTTCTCGATTGCCCGGCACATGAGGAAGTTGAGGTCGGCAATGTCAGTGAGGTGCTTC
TTGTTGTTCTTGGCGTTGGTATACGAATCTTGGCACCTCTTGGCCAGCTCCCATAGCTCTTCTC
CGCCATGGATTGCGTGCGTGTTGGTGATAGCAGAATGGTAGAACCCTGCAGAATCAGATCAGTA
ATGTCAGCAATGCTTTGCTTGTAGAATGTTTTGTGTTTCTCGTGGTGCATTAATGAGCAGTGTC
CTGCATTGTGACCAATGTGAGTAAAAGATGTAGGGGCTCACCAACGTTGTGATCATCCAGGGCC
GGTTCGAGAAACTTGCGGCAATTGATAAGGGTCGCAATGGAGTACGTCTCCTGCTGGTTGCTCG
CCAGCTGCAGCTTCGACTGCCGTGCAGCGAGCAGCGTCGCGGCCGCCATGGCTGCACAAAGCTT
CACTCCGTTCTGCTTGCACGCCTAGATCAGTGGCAAATTGGCAATGTGGTTAGGAGAAGTGATC
TGATCTGCGTGTTTGCAATTTGGAAGTAAAATGTGAGAGAGAAGCTTAGGCTCACATCGAGCAG
CCTCGTCGTCTCGTCGCGGTCGAAGCCGAGGCGCAGCATCTGCGTGGACCTCTCCGTGCCGGTC
ACCTCGAACGGCAGCGTCGACGTGCGTAGGCCGTTGATGGAGTAGCCCACCATGTCGAGCCCCC
GCGCCCAGAACGGCTTCCACGAGTCCCTCTGCGGTATCCTCTCCTCCAGCGACGCGCGCACCGC
CGCGTCCTCGGGTTCGCTCGCTGCCGCGGCGGCGGCGCCATCGCCGGCCAGCTGCGCGAGGAGC
TCCCTCACCAGCGAGGCCGACGCCGCGCGGTCGCACGCGGCCGTGTGGATCCGGACGAACAGCG
CCGACCCCCCACCCGCTGGCGGCGGCAGCTCGTAGAGCGTGGCGAAGAGCACCGGTGGCGCGTC
GGGCTCGTGTTCGGACGCGGTTGCGGTTGCGGCGGCGGCGGTCCATGGGTTGCGGTTGAGCTCG
TGCTCGAGGAGGGAAGGGAAGTCGGTGGCGGATTCGGGCACGGGGAGGAGCTCGAGCGCTAGCG
GGGGCGGAGGCGGCGCGGCGGCGGAGGGGAAGGCGAGGGTTGGGCTGCCGGAAGCGGACCCGCG
GAGGCGCGCGCGGAGGACGGGGTGAGCGTCCAGGATGGCCCGCAGCGCCGCCTGGACGGTCGCC
GCCGCCACCGCCGCCTCTGCGCCGCGCGCGAGGCGGAGCGCGAGCAGCGTCGTGCCGGTTCCGC
CCGGCACGGCGCGGTACCAGCCGTACTCCATCCCGCCCACCGCGCGGGCGCGCCACTCGGCTGC
CGCCTCCGGCTCGCCGCCGCCGCCGCCGACGGTCGCGGGATCCATGGATGAACAAAACTGTTTG
GTGGTGGATCGGAGATCGTAGTAGTGTTGGACTGGTGGTTGGTCCGCCGCGGCGGTGTGGCGCT
TTGTCGTCACCTCTCCTTCCTATGATCCTATCCCGTGGTTTGCTTACGCAACACAGACGATTTC
GCAACGAAACAGTCGAGCTGATGGAATGCGAAATGGCGCGAAATGCAGCTCGTAGCCCCGGACA
AAGTCGTCCCTGTCTCGTGCACTCGGGTGTGGCCGCCCGGCCGGCCGGCTGCCGGGCTTCAGTA
CAGTCATGATAGCGCAGTAGCATCCGGCACACGACTGGGCGAGAGCGTCGTACTCGCGTGGAGA
GGAACGGTGAAGTGTTCCAAAATCTTCTTTTGATTGGTTACCGATCCACCACCACCACACGTTC
CCGTGGCAATGCAAGGCATGGATGGTTTGATGATTTGATGGATGGAAGTTACCGTCGGCGCTTG
GCGTTGTTCATTGGTAGAATTCTGGAACGTGCGAGCGCGTGTTGCATACTTGCATTGCCGCACA
CTCGCACAGCACTCAACTGGCGCTAGGCACTTCCTCTCAAAGACGACGTGGTTGCCGCAGCTCA
TCGAGTACATAGAATCAACGGTGGATCTGCAGTGAACCTCAGATTGCATATGATGGAAGATTGG
AAGGAGGCGAGGAAACAGTCGACACGGTATCATATTTAAGGAGCAAATTTAAGAGAATCATTCC
ATTTGATCAACCTATAATATTTCTGTTAAGTTATCCATCTTCAACACCAACTCAATATCCTAAA
GGAACATAAATTCACTATAAATCTCTTTTATTAACATATTTCTTTTTTTTTAAGAACATCAACA
GAGTAGTTCTCATCCAATCACAAAAACAATGTAACCCTCCAGTGGTAAAAAAATGGCATGTTAA
CAACCTAGTCAAATTTTAGCAGCTGACAGAAAGTTGGGAACCATTATCTCCAGTAGCCCCTTGG
GATTGTCCACATGAACCCAATGGCCAGAGTTGGGGAGAACGTGAAGAGAAACTTTACCAGCATC
AGGCTTGCTCTCTCTCCTAGACAACGCTTTTAGCCTCTGAACATCATCAGAAAGCCATCTATCA
CTGAGCTCTGCTTGCACTATGGCGATGTCCAAACCCTTTGGTGGGTTCTCAAGCAGTGTCCAAT
AGCTTCTTTCTCTGTATATCAAGAATAATTTTCGTCAGTTTACAGATAGCAAAACAGAATTAAA
CATGTCGATGTATGATTCATATGAGCAAGCAGCTATTAACATTCATGGTTTATAATAAGCAGCT
ATTTCACAGATTTAGAATGGGTAGGAAATCAGAAAAGGAAGTGTGGTCAGAAGAAAAGGAAAGG
TGAACATTACCTATAAGAATTAAACATATCTATGGCAGCCTGAAGATCAAACGCCCATGTCACA
TGTTCATTGTCCTTTTTTAAGTTGCTCCCAATCCATTCTGAAAGAGACTTTGAAAATCCCAAGT
TGATCATGTGGTCGACAACCCACCTGACAGTAAACAGGCATCATCACTAAGGATATAACAAACA
TGAATCATTGGTCCTTCCTGATAAACATTATGATAGGGCCAAAACATTTGCTATCCTTTAACAG
TAAGGCTCCTTGGTTGTATATACAGCATTATGAGACAATTGATCGAAGCAGGCATCAGTTATCA
TCTATATAGGGAGTCTAAAGTTATTTATACTGCTTCAGCTATAAAACAGAACAACATGAAAAAA
CTCAGGAATAAGACATTATAACACACCAGGTGTTACAGAGGACCAAGCTTGATGTTTGCTTCTG
TGCACTTCTTTTATACGCATGGTGACATGCTCATAACATACAGGGGCTGTTCAGCTGCCTGGCT
GCAGCAGCTACTGCTGCAACAGGAACAGTTATGCAAGCACGAGCATGAAGGAAGCAACGGGCTG
CAGCAGCCCTGCCTGCCGAACAGCCCCACAGTTTACAGCGAAATAGTAACAATGTACAAAATTG
AGTAAAATTCTGTCTTAGGATTGTTCTATTTGTGTGCGGAGTAACTAGTTAGTATGATATTCAA
GATTCTATAAACTGCATTTTTTGTACTGTCATGCACTTTGGATTACCCAGGGGCTAGACAATTT
GGCGCAAAAATAAACATGTTAAATCATACAGTTCAAATTAACAAATCAAGCAAATAGCAGGGAT
AAATTAAAACCGGAACAGCAAGGGAAGAGAGAGTACTTGCGCGATGGAAGCGATGAAGGAAGAC
TTGCCAGCGTTTGCAAAACCCGTTCAACTTCACCATCACTGTTATCTGTTTCTACTTGACCAGG
AACAGAATCAAGCACCCAAAGCTGTT
						
					

			
		

Sequences
Splice junction sequence	GAAGGAAGACTTGCCAGCGTTTGCAAAACCCGTTCAACTTCACCATCACTGTTATCTGTTTCTA CTTGACCAGGAACAGAATCAAGCACCCAAAGCTGTTggttcgacgatctttcaggtacaatctt caaagctttcatcatctccgatgctcccttcgtgtaagatctgcttcaccttgttcaagatctc ctgcatct
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GGTTCGACGATCTTTCAGGTACAATCTTCAAAGCTTTCATCATCTCCGATGCTCCCTTCGTGTA AGATCTGCTTCACCTTGTTCAAGATCTCCTGCATCTGCTTTCTGGAATGGAGAGGGCAAGGGTA CATGCACGCGAACTCCAGCTGACCATCTCTGATGGAGTCAAACAATCCGATGGATGGCCCGACG CCATGCACGGTGGCGCAGCACACGAATTCCTCCACGCCGGCCTTGCTCTGCAGATCGGAGAGGT CGTACACCACCGGCTCCTCGAACACGGAGACGACCGCCGTCCGGAGCGCAGAGCCCGTCGTCAG CTGCGGGTTCTCGATTGCCCGGCACATGAGGAAGTTGAGGTCGGCAATGTCAGTGAGGTGCTTC TTGTTGTTCTTGGCGTTGGTATACGAATCTTGGCACCTCTTGGCCAGCTCCCATAGCTCTTCTC CGCCATGGATTGCGTGCGTGTTGGTGATAGCAGAATGGTAGAACCCTGCAGAATCAGATCAGTA ATGTCAGCAATGCTTTGCTTGTAGAATGTTTTGTGTTTCTCGTGGTGCATTAATGAGCAGTGTC CTGCATTGTGACCAATGTGAGTAAAAGATGTAGGGGCTCACCAACGTTGTGATCATCCAGGGCC GGTTCGAGAAACTTGCGGCAATTGATAAGGGTCGCAATGGAGTACGTCTCCTGCTGGTTGCTCG CCAGCTGCAGCTTCGACTGCCGTGCAGCGAGCAGCGTCGCGGCCGCCATGGCTGCACAAAGCTT CACTCCGTTCTGCTTGCACGCCTAGATCAGTGGCAAATTGGCAATGTGGTTAGGAGAAGTGATC TGATCTGCGTGTTTGCAATTTGGAAGTAAAATGTGAGAGAGAAGCTTAGGCTCACATCGAGCAG CCTCGTCGTCTCGTCGCGGTCGAAGCCGAGGCGCAGCATCTGCGTGGACCTCTCCGTGCCGGTC ACCTCGAACGGCAGCGTCGACGTGCGTAGGCCGTTGATGGAGTAGCCCACCATGTCGAGCCCCC GCGCCCAGAACGGCTTCCACGAGTCCCTCTGCGGTATCCTCTCCTCCAGCGACGCGCGCACCGC CGCGTCCTCGGGTTCGCTCGCTGCCGCGGCGGCGGCGCCATCGCCGGCCAGCTGCGCGAGGAGC TCCCTCACCAGCGAGGCCGACGCCGCGCGGTCGCACGCGGCCGTGTGGATCCGGACGAACAGCG CCGACCCCCCACCCGCTGGCGGCGGCAGCTCGTAGAGCGTGGCGAAGAGCACCGGTGGCGCGTC GGGCTCGTGTTCGGACGCGGTTGCGGTTGCGGCGGCGGCGGTCCATGGGTTGCGGTTGAGCTCG TGCTCGAGGAGGGAAGGGAAGTCGGTGGCGGATTCGGGCACGGGGAGGAGCTCGAGCGCTAGCG GGGGCGGAGGCGGCGCGGCGGCGGAGGGGAAGGCGAGGGTTGGGCTGCCGGAAGCGGACCCGCG GAGGCGCGCGCGGAGGACGGGGTGAGCGTCCAGGATGGCCCGCAGCGCCGCCTGGACGGTCGCC GCCGCCACCGCCGCCTCTGCGCCGCGCGCGAGGCGGAGCGCGAGCAGCGTCGTGCCGGTTCCGC CCGGCACGGCGCGGTACCAGCCGTACTCCATCCCGCCCACCGCGCGGGCGCGCCACTCGGCTGC CGCCTCCGGCTCGCCGCCGCCGCCGCCGACGGTCGCGGGATCCATGGATGAACAAAACTGTTTG GTGGTGGATCGGAGATCGTAGTAGTGTTGGACTGGTGGTTGGTCCGCCGCGGCGGTGTGGCGCT TTGTCGTCACCTCTCCTTCCTATGATCCTATCCCGTGGTTTGCTTACGCAACACAGACGATTTC GCAACGAAACAGTCGAGCTGATGGAATGCGAAATGGCGCGAAATGCAGCTCGTAGCCCCGGACA AAGTCGTCCCTGTCTCGTGCACTCGGGTGTGGCCGCCCGGCCGGCCGGCTGCCGGGCTTCAGTA CAGTCATGATAGCGCAGTAGCATCCGGCACACGACTGGGCGAGAGCGTCGTACTCGCGTGGAGA GGAACGGTGAAGTGTTCCAAAATCTTCTTTTGATTGGTTACCGATCCACCACCACCACACGTTC CCGTGGCAATGCAAGGCATGGATGGTTTGATGATTTGATGGATGGAAGTTACCGTCGGCGCTTG GCGTTGTTCATTGGTAGAATTCTGGAACGTGCGAGCGCGTGTTGCATACTTGCATTGCCGCACA CTCGCACAGCACTCAACTGGCGCTAGGCACTTCCTCTCAAAGACGACGTGGTTGCCGCAGCTCA TCGAGTACATAGAATCAACGGTGGATCTGCAGTGAACCTCAGATTGCATATGATGGAAGATTGG AAGGAGGCGAGGAAACAGTCGACACGGTATCATATTTAAGGAGCAAATTTAAGAGAATCATTCC ATTTGATCAACCTATAATATTTCTGTTAAGTTATCCATCTTCAACACCAACTCAATATCCTAAA GGAACATAAATTCACTATAAATCTCTTTTATTAACATATTTCTTTTTTTTTAAGAACATCAACA GAGTAGTTCTCATCCAATCACAAAAACAATGTAACCCTCCAGTGGTAAAAAAATGGCATGTTAA CAACCTAGTCAAATTTTAGCAGCTGACAGAAAGTTGGGAACCATTATCTCCAGTAGCCCCTTGG GATTGTCCACATGAACCCAATGGCCAGAGTTGGGGAGAACGTGAAGAGAAACTTTACCAGCATC AGGCTTGCTCTCTCTCCTAGACAACGCTTTTAGCCTCTGAACATCATCAGAAAGCCATCTATCA CTGAGCTCTGCTTGCACTATGGCGATGTCCAAACCCTTTGGTGGGTTCTCAAGCAGTGTCCAAT AGCTTCTTTCTCTGTATATCAAGAATAATTTTCGTCAGTTTACAGATAGCAAAACAGAATTAAA CATGTCGATGTATGATTCATATGAGCAAGCAGCTATTAACATTCATGGTTTATAATAAGCAGCT ATTTCACAGATTTAGAATGGGTAGGAAATCAGAAAAGGAAGTGTGGTCAGAAGAAAAGGAAAGG TGAACATTACCTATAAGAATTAAACATATCTATGGCAGCCTGAAGATCAAACGCCCATGTCACA TGTTCATTGTCCTTTTTTAAGTTGCTCCCAATCCATTCTGAAAGAGACTTTGAAAATCCCAAGT TGATCATGTGGTCGACAACCCACCTGACAGTAAACAGGCATCATCACTAAGGATATAACAAACA TGAATCATTGGTCCTTCCTGATAAACATTATGATAGGGCCAAAACATTTGCTATCCTTTAACAG TAAGGCTCCTTGGTTGTATATACAGCATTATGAGACAATTGATCGAAGCAGGCATCAGTTATCA TCTATATAGGGAGTCTAAAGTTATTTATACTGCTTCAGCTATAAAACAGAACAACATGAAAAAA CTCAGGAATAAGACATTATAACACACCAGGTGTTACAGAGGACCAAGCTTGATGTTTGCTTCTG TGCACTTCTTTTATACGCATGGTGACATGCTCATAACATACAGGGGCTGTTCAGCTGCCTGGCT GCAGCAGCTACTGCTGCAACAGGAACAGTTATGCAAGCACGAGCATGAAGGAAGCAACGGGCTG CAGCAGCCCTGCCTGCCGAACAGCCCCACAGTTTACAGCGAAATAGTAACAATGTACAAAATTG AGTAAAATTCTGTCTTAGGATTGTTCTATTTGTGTGCGGAGTAACTAGTTAGTATGATATTCAA GATTCTATAAACTGCATTTTTTGTACTGTCATGCACTTTGGATTACCCAGGGGCTAGACAATTT GGCGCAAAAATAAACATGTTAAATCATACAGTTCAAATTAACAAATCAAGCAAATAGCAGGGAT AAATTAAAACCGGAACAGCAAGGGAAGAGAGAGTACTTGCGCGATGGAAGCGATGAAGGAAGAC TTGCCAGCGTTTGCAAAACCCGTTCAACTTCACCATCACTGTTATCTGTTTCTACTTGACCAGG AACAGAATCAAGCACCCAAAGCTGTT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.227831584

Conservation Information
Conserved circRNAs	NA
PMCS	0.227831584

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os01g0861900_circ_ag.1

Address

Any questions?

Supported by