Detail information of Os11g0516000_circ_g.2


General Information
CircRNA Name Os11g0516000_circ_g.2
ID in PlantcircBase osa_circ_009424
Alias NA
Organism Oryza sativa
Position chr11: 18506382-18506543  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0516000
Parent gene annotation Similar to Serine palmitoyltransferase (Fragment). (Os11t0516000
-01)
Parent gene strand +
Alternative splicing Os11g0516000_circ_g.1
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0516000-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATCCAGCTGATGTGGACATAATGATGGGCACTTTCACTAAGTCATTTGGATCATGTGGTGGAT
ATATTGCAGCATCGAAGgcttacacttatctggatgaggcccatagcattggcgctgttggcca
gtctggtcggggtgtttgtgagctccttggggtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTTACACTTATCTGGATGAGGCCCATAGCATTGGCGCTGTTGGCCAGTCTGGTCGGGGTGTTT
GTGAGCTCCTTGGGGTTGATCCAGCTGATGTGGACATAATGATGGGCACTTTCACTAAGTCATT
TGGATCATGTGGTGGATATATTGCAGCATCGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.54956785
Functional Information
Coding potential Y
Potential coding position 18506485-18506540(+)
Potential amino acid sequence MMGTFTKSFGSCGGYIAASKAYTYLDEAHSIGAVGQSGRGVCELLGVDPADVDIMMGTFTKSFG
SCGGYIAASKAYTYLDEAHSIGAVGQSGRGVCELLGVDPADVDIMMGTFTKSFGSCGGYIAASK
AYTYLDEAHSIGAVGQSGRGVCELLGVDPADVDIMMGTFTKSFGSCGGYIAASK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017