Detail information of BGIOSGA026012_circ_g.3


General Information
CircRNA Name BGIOSGA026012_circ_g.3
ID in PlantcircBase osi_circ_017266
Alias Chr07:23900929_23905455(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr7: 21602175-21606701  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA026012
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA026012_circ_g.1 BGIOSGA026012_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-AA
Number of exons covered BGIOSGA026012-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGGGAGGAAGGTTTAGCTCTCCTTGAGAAGACAGGCGTTTATCTTGGCCCAGATCGTTATGCA
CTTGACCATGGACCAATTGATGTGATGCGTGGTGAGgatcggttttgcttggagcatgggacca
aaggttggtatgatgcactcgatcatcacttcaggtggctcctccaatacagaatcagtccatt
tttctgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATCGGTTTTGCTTGGAGCATGGGACCAAAGGTTGGTATGATGCACTCGATCATCACTTCAGGT
GGCTCCTCCAATACAGAATCAGTCCATTTTTCTGCAGATGGGGAGATAGCATGCGCATTCTAGC
ATACACATGCCCTTGGCCTGGTAACACTTCCATCTTTGTTGGTAAAACAATCTGCTGCTATGGA
GTGTGATTTTTTTCTCACTTGTTTATTATTATTATAGCTGACCATCCAAAGGCGAAAGAATATT
ACTCTGATCCAAGACTAGCAGCATATGCTGTACCATATGCACCTATCCTATCAAGGTATTGCTC
AAATTTCTGCCAAGTTTTATACCAATTTGCTATATATGTTTTTGGCTCATTTTTTTTATTCACA
ACAGCACTGATGCTGCGAAAAATTCCCTGCGAAGAGAGGTTGAAATCTTGAAATCAGAGGCTCA
TTGGTCGAAATCTTACTTCTATTTGTGGGATGAGGTGTGTCATTGCTCAGTTACACGTCTCTAC
AACACAAAATGCAAGTTTCTCCTTAGTTGTAGTGTTCTTTATGATGCCATATCAATTTGTAGGT
TCCATTATGGCCTGCCTAGCTAATAGCTATATGCAGTTGGACCTACATTATTCCTATGAATAAT
AGCAGTCTTAGATTATCAGGTTTAATTATACATCTATGTTGATTGTTGAATAGAAAAATATGGT
TAATTCTTACTGATGTTTAGATCTATTCTCTTAATCGGATAAGGGTAACTTCTGTTGTAATATA
ATGCGTCCTGATGTAACATACCACGAACAATAAAGTGATACGGAGTACATTGAACATCCCATGT
CCAGTATATTCTTATATCGTAAACACACACATAAAATTGGAAACCAGCAAGTATAACCGTAACT
GCATCTTTCACATGCAAAAATTTTGTAGATACATGATTGTGAGCGTGGTAATGACGAGACCAAC
CAGTTTATGCACTGCTCAATAAAGCATGACACCTGAAATAACCAAAATAGCTACATGTGTGCTC
CATAGAACATAGGGATAGGCACGGACCAACCCGTGGGTACTCTTTGGGCCACTCTCCAACATCA
ATTTATACTGTTCATTTCAGTATTAAAGAAGAGATACCTTATGATCTAACAGTTATTTTTATTT
TTCTCAGCCACTGAATATGGAACAGTATGATGTAATCTGCAGCATCTCTAATGAGTTGCGTTCA
TATGCATCTGATGTGCGTATTTTGACAACTTATTACTGTGGTGAGTAAGACAATCTAATCTCCC
TTAGTGATGGTGCGTGTTAAACAACATCCTTCCCTACTTGAATTTGTAATTAGCATATATTTAG
ATTGGTCATTGGTGTATCATAAAATAACTTCCTTTATTGTTTAGCCATTAGGTATGGTGTTTTT
TATATCCTGTATGGAATGACCATATGGATTACCTGCTTACGATGCAAAGATCTTCTATCATCCT
GTTTGGTCCTACTTTTTCTTCAAGTCAGGATAACATTTATGTACCTACAGAAGCTGATCACACT
TGGCAAGTCTTGAGTTTCTTTTAAGCATATATCTTATTTTTAAATGCAAATGGCTCATGTAGGC
CCAAGTGGTTCTGAACTGGCTCCTTCTACATTTGAGGCCTTTGTGAAAGTTCCAAATGTTCTAC
GTCCACATACGCAGATATTTTGCACAAGGTTTGCACTCCTGCTGGTATTTCTTATTTGTTCTAA
ACAGCTGAAATAGTGTGGGCATACGGTGTCCATATCCCTGTTTACAATATGTACACATGTTTCA
CACTGACATAGCATGCTACGCTTATAATTTTTCCAAAAAAACTGATACAACAGCATAGATCTAT
ACTAGGAATGGGAGTGGGCTAATCCACGGGTACCCATTGACTTGCACTAGTTTAACTAAAATTG
CACCTTTTCACTAGCAAGAAAGAAAAAAAAAAGGATTTTTAGTTGAACTAGTGGGTCAAGGGGT
ACCCATTTGTGGACTCACTCCGATAGCTGCTCAACACTGATGCTAAAATGATGGACTTGTAATG
CTTTATTCTACAACAAAAAAAACATAAGGTTCAAAACTTTTAAGTTTTTTACCGTGTTTTCTAC
GTCTTACATTATCTTGTCAAATAAATTCAGAGCTAGGTTCAGATATTAGAAACTAGTCCTAATT
TGTAACATAAACAAGATAGATACAATTATCAATGCCGGTCTGAAAGAATTTTTTCCATTCTCAC
AAGGCACTGACATTATGATGATACGACATTGGCAATTTGATGGAATTCACAACTCTGATACATG
TTGGAAATGTTTGGCACTGTGTGGATATTGGATATGCGACATGGAGGCTAGTAGAAGTATTGGT
AGCTTGGTGCATAAAATCATTTTCATACACTGTTCAAAATCAGATGTAGTATATCCAATTGATC
TAGTGTTCTTTTTATACAGTGAATGGGTTCTTGGCACGAGAGAGGACTTGGTGAAGGATATTGT
TGCTGAACTACGACCTGATCTTGGTGAAGTAAGACCAAATTATGTTCTTTTAAATAGTATGGAC
AACATTCATTTTCTTTCTACAACATCTGTACTTGCATTGAATTTGTGCTTTAGGTTATAGCGTA
GATGTTGCCGTGCTTGGAAGAGCTCATGGCTTAGAGCATTTATTTTCTGAATAATGGTGATTTG
AATCTGTTGGTATTTTGGTCTAAGATTAGTATTAGTCAGAATTAAAAAAAAAAATTAGTTGGAT
AAGAACACATAGGGTTTCGTAATCGGTAATCTTATGAAATGTTGTGCCTGTTTTCCTGTTACTC
TCTCCTTTAATGTCTTTTTCTAAGGCACAATTTGACTTGACACTATCTTTAAAATTGAACTCAG
ATTATTATTTCCGTTAAATATATTGTCATAACTACCCAAAATGGGAAAATCACAAGAAATATTA
TCAAATATAAATCCAGTGCTACCATTTCCATACACCTACATATAATGAGACCAGGTGTGGGCAA
AAAGTTACAAATGTTTGAATCTTGAATAGCACCCGCGCCTTATAAAAGTGGGCTCTCTATGTAA
ACAGTACTGTTCTCTGGTGCGCCATCCGTTTACTGTTGTGCATGCATATGGACTTATGGAGCCC
TTTATAGTTTACTGTTTTTCTATCTTGATGAGCTGAAGTAATTTCAATCTTATCTAGGAATGGT
GGACATATGTGTGTATGGGCCCTTCTGATCCTCAACCAAACTGGCATCTTGGGATGCGTGGAAC
CCAGCACAGGGCAGTGATGTGGAGAGTGTGGAAGGAAGGTGGAACAGGATTCCTTTATTGGGGT
ACCAACTGCTACGAGAAGGCTATGATTCCAAGTGCTGAGGTATGATGTGGCATCGGGAACCATT
TAATACAATGTGATACCAATGTCTATGAAGGTGTATTACATTGAATACTACAGTAAAATTCAAC
TTGATAGATCGGCCTCTACAATTTGCATCACGCTCATCTGATTGTCTTACTTGGCGTGACTGCA
GATTTGTTTCCGACGTGGTCTTCCTCCTGGCGATGGGGTTCTGTTCTATCCTGGTGAAGTGTTT
TCTTCATCACATGAACCGGTTGCGTCCACTAGGCTAGAGCGCATTCTCAGTGGCATGCAGGTGA
GGTTTTTTGGAATGCTTTGCCTCTGTTAAAATGCTAGTATATGTTTTTTTAAAAGTAATGGAAG
TAAATCCAGCCTCTATATGAAAGATGAATTCGTCCACAATGCTAGTATATGTTTGCTAAGTTAG
AACTATTCAGATTGAAATTAAGTGCAAAGTACTTATTCTGAAAGAGGCTTCATGGCTGAATCAC
TTAAGCTGTCATTTAAATCCCACCTTTGCTTTTGATTGTTCACAGTACACCATATTATAAACTG
TGAAGCCAATGACATTTGGAATATTGCATGAATGAGACCTTTTCTTTTGAACAAACCAGTGCTT
AGGGCCTGTTTGGGGGAGTTTCTAGCTGCTGCAGCTTCTTCCAGAATCAGAAGCTCCCCCAAAC
AGTCCAGCTTTGGTACAGATTCTGAGAATATGTAGTTGTAGAATCCAGAAAAAGAACTAGAAGA
CAGAAGCTGAAAAACCTAGTTTTTCCATATTCTCAAAAGGTGGCTACCAACCAGCTACTTCTCA
GAATTTTAAGCTCCCCCAAACAGGCCATTAGAGTGCGCCAATTTCACTGAATTTAGCAGGAAAT
TTCATTGAATATACCAAATGAAACTTTCAGTCTTATAGTTTAATTTTGGTTACCAGAACCACAG
TTCTCGGCTGTGGATAGTACAAAAACTGAAACTCCATCAGCGAGCAATTTGTTCACGGTTGACT
CTGCTCACAGTTGTTCCTTACTGATGTTCTAACGCAGGACATCGAATACCTGAAGCTTTATTCG
TCAAGGTACGGCAGGGAGGAAGGTTTAGCTCTCCTTGAGAAGACAGGCGTTTATCTTGGCCCAG
ATCGTTATGCACTTGACCATGGACCAATTGATGTGATGCGTGGTGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR5079b
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021