Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | BGIOSGA026012_circ_g.2 |
| ID in PlantcircBase | osi_circ_007289 |
| Alias | 7:21602154|21605818 |
| Organism | Oryza sativa ssp. indica |
| Position | chr7: 21602154-21605818 JBrowse» |
| Reference genome | Oryza_indica.ASM465v1.42 |
| Type | e-circRNA |
| Identification method | find_circ |
| Parent gene | BGIOSGA026012 |
| Parent gene annotation | NA |
| Parent gene strand | + |
| Alternative splicing | BGIOSGA026012_circ_g.1 BGIOSGA026012_circ_g.3 |
| Support reads | NA |
| Tissues | leaf |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | BGIOSGA026012-TA:8 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
21602230-21605794(-) 21602290-21605815(+) |
| Potential amino acid sequence |
MIECIIPTFGPMLQAKPIFNHSFRYLHATENAL*(-) MRILAYTCPWPADHPKAKEYYSDPRLAAYAVPYAPILSSTDAAKNSLRREVEILKSEAHWSKSY FYLWDEPLNMEQYDVICSISNELRSYASDVRILTTYYCGPSGSELAPSTFEAFVKVPNVLRPHT QIFCTSEWVLGTREDLVKDIVAELRPDLGEEWWTYVCMGPSDPQPNWHLGMRGTQHRAVMWRVW KEGGTGFLYWGTNCYEKAMIPSAEICFRRGLPPGDGVLFYPGEVFSSSHEPVASTRLERILSGM QISETVIEDRFCLEHGTKGWYDALDHHFRWLLQYRISPFFCRWGDSMRILAYTCPWPADHPKAK EYYSDPRLAAYAVPYAPILSSTDAAKNSLRREVEILKSEAHWSKSYFYLWDEPLNMEQYDVICS ISNELRSYASDVRILTTYYCGPSGSELAPSTFEAFVKVPNVLRPHTQIFCTSEWVLGTREDLVK DIVAELRPDLGEEWWTYVCMGPSDPQPNWHLGMRGTQHRAVMWRVWKEGGTGFLYWGTNCYEKA MIPSAEICFRRGLPPGDGVLFYPGEVFSSSHEPVASTRLERILSGMQISETVIEDRFCLEHGTK GWYDALDHHFRWLLQYRISPFFCRWGDSMRILAYTCPWPADHPKAKEYYSDPRLAAYAVPYAPI LSSTDAAKNSLRREVEILKSEAHWSKSYFYLWDEPLNMEQYDVICSISNELRSYASDVRILTTY YCGPSGSELAPSTFEAFVKVPNVLRPHTQIFCTSEWVLGTREDLVKDIVAELRPDLGEEWWTYV CMGPSDPQPNWHLGMRGTQHRAVMWRVWKEGGTGFLYWGTNCYEKAMIPSAEICFRRGLPPGDG VLFYPGEVFSSSHEPVASTRLERILSGMQISETVIEDRFCLEHGTKGWYDALDHHFRWLLQYRI SPFFCRWGDSMRILAYTCPWPADHPKAKEYYSDPRLAAYAVPYAPILSSTDAAKNSLRREVEIL KSEAHWSKSYFYLWDEPLNMEQYDVICSISNELRSYASDVRILTTYYCGPSGSELAPSTFEAFV KVPNVLRPHTQIFCTSEWVLGTREDLVKDIVAELRPDLGEEWWTYVCMGPSDPQPNWHLGMRGT QHRAVMWRVWKEGGTGFLYWGTNCYEKAMIPSAEICFRRGLPPGDGVLFYPGEVFSSSHEPVAS TRLERILSGMQ(+) |
| Sponge-miRNAs | osa-miR5079b |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Huang et al., 2021 |