Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA026012_circ_g.2 |
ID in PlantcircBase | osi_circ_007289 |
Alias | 7:21602154|21605818 |
Organism | Oryza sativa ssp. indica |
Position | chr7: 21602154-21605818 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA026012 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA026012_circ_g.1 BGIOSGA026012_circ_g.3 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA026012-TA:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
21602230-21605794(-) 21602290-21605815(+) |
Potential amino acid sequence |
MIECIIPTFGPMLQAKPIFNHSFRYLHATENAL*(-) MRILAYTCPWPADHPKAKEYYSDPRLAAYAVPYAPILSSTDAAKNSLRREVEILKSEAHWSKSY FYLWDEPLNMEQYDVICSISNELRSYASDVRILTTYYCGPSGSELAPSTFEAFVKVPNVLRPHT QIFCTSEWVLGTREDLVKDIVAELRPDLGEEWWTYVCMGPSDPQPNWHLGMRGTQHRAVMWRVW KEGGTGFLYWGTNCYEKAMIPSAEICFRRGLPPGDGVLFYPGEVFSSSHEPVASTRLERILSGM QISETVIEDRFCLEHGTKGWYDALDHHFRWLLQYRISPFFCRWGDSMRILAYTCPWPADHPKAK EYYSDPRLAAYAVPYAPILSSTDAAKNSLRREVEILKSEAHWSKSYFYLWDEPLNMEQYDVICS ISNELRSYASDVRILTTYYCGPSGSELAPSTFEAFVKVPNVLRPHTQIFCTSEWVLGTREDLVK DIVAELRPDLGEEWWTYVCMGPSDPQPNWHLGMRGTQHRAVMWRVWKEGGTGFLYWGTNCYEKA MIPSAEICFRRGLPPGDGVLFYPGEVFSSSHEPVASTRLERILSGMQISETVIEDRFCLEHGTK GWYDALDHHFRWLLQYRISPFFCRWGDSMRILAYTCPWPADHPKAKEYYSDPRLAAYAVPYAPI LSSTDAAKNSLRREVEILKSEAHWSKSYFYLWDEPLNMEQYDVICSISNELRSYASDVRILTTY YCGPSGSELAPSTFEAFVKVPNVLRPHTQIFCTSEWVLGTREDLVKDIVAELRPDLGEEWWTYV CMGPSDPQPNWHLGMRGTQHRAVMWRVWKEGGTGFLYWGTNCYEKAMIPSAEICFRRGLPPGDG VLFYPGEVFSSSHEPVASTRLERILSGMQISETVIEDRFCLEHGTKGWYDALDHHFRWLLQYRI SPFFCRWGDSMRILAYTCPWPADHPKAKEYYSDPRLAAYAVPYAPILSSTDAAKNSLRREVEIL KSEAHWSKSYFYLWDEPLNMEQYDVICSISNELRSYASDVRILTTYYCGPSGSELAPSTFEAFV KVPNVLRPHTQIFCTSEWVLGTREDLVKDIVAELRPDLGEEWWTYVCMGPSDPQPNWHLGMRGT QHRAVMWRVWKEGGTGFLYWGTNCYEKAMIPSAEICFRRGLPPGDGVLFYPGEVFSSSHEPVAS TRLERILSGMQ(+) |
Sponge-miRNAs | osa-miR5079b |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |