Detail information of BGIOSGA026012_circ_g.2


General Information
CircRNA Name BGIOSGA026012_circ_g.2
ID in PlantcircBase osi_circ_007289
Alias 7:21602154|21605818
Organism Oryza sativa ssp. indica
Position chr7: 21602154-21605818  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA026012
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA026012_circ_g.1 BGIOSGA026012_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA026012-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCTGGCGATGGGGTTCTGTTCTATCCTGGTGAAGTGTTTTCTTCATCACATGAACCGGTTGCG
TCCACTAGGCTAGAGCGCATTCTCAGTGGCATGCAGatatctgaaactgtgattgaagatcggt
tttgcttggagcatgggaccaaaggttggtatgatgcactcgatcatcacttcaggtggctcct
ccaataca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATATCTGAAACTGTGATTGAAGATCGGTTTTGCTTGGAGCATGGGACCAAAGGTTGGTATGATG
CACTCGATCATCACTTCAGGTGGCTCCTCCAATACAGAATCAGTCCATTTTTCTGCAGATGGGG
AGATAGCATGCGCATTCTAGCATACACATGCCCTTGGCCTGGTAACACTTCCATCTTTGTTGGT
AAAACAATCTGCTGCTATGGAGTGTGATTTTTTTCTCACTTGTTTATTATTATTATAGCTGACC
ATCCAAAGGCGAAAGAATATTACTCTGATCCAAGACTAGCAGCATATGCTGTACCATATGCACC
TATCCTATCAAGGTATTGCTCAAATTTCTGCCAAGTTTTATACCAATTTGCTATATATGTTTTT
GGCTCATTTTTTTTATTCACAACAGCACTGATGCTGCGAAAAATTCCCTGCGAAGAGAGGTTGA
AATCTTGAAATCAGAGGCTCATTGGTCGAAATCTTACTTCTATTTGTGGGATGAGGTGTGTCAT
TGCTCAGTTACACGTCTCTACAACACAAAATGCAAGTTTCTCCTTAGTTGTAGTGTTCTTTATG
ATGCCATATCAATTTGTAGGTTCCATTATGGCCTGCCTAGCTAATAGCTATATGCAGTTGGACC
TACATTATTCCTATGAATAATAGCAGTCTTAGATTATCAGGTTTAATTATACATCTATGTTGAT
TGTTGAATAGAAAAATATGGTTAATTCTTACTGATGTTTAGATCTATTCTCTTAATCGGATAAG
GGTAACTTCTGTTGTAATATAATGCGTCCTGATGTAACATACCACGAACAATAAAGTGATACGG
AGTACATTGAACATCCCATGTCCAGTATATTCTTATATCGTAAACACACACATAAAATTGGAAA
CCAGCAAGTATAACCGTAACTGCATCTTTCACATGCAAAAATTTTGTAGATACATGATTGTGAG
CGTGGTAATGACGAGACCAACCAGTTTATGCACTGCTCAATAAAGCATGACACCTGAAATAACC
AAAATAGCTACATGTGTGCTCCATAGAACATAGGGATAGGCACGGACCAACCCGTGGGTACTCT
TTGGGCCACTCTCCAACATCAATTTATACTGTTCATTTCAGTATTAAAGAAGAGATACCTTATG
ATCTAACAGTTATTTTTATTTTTCTCAGCCACTGAATATGGAACAGTATGATGTAATCTGCAGC
ATCTCTAATGAGTTGCGTTCATATGCATCTGATGTGCGTATTTTGACAACTTATTACTGTGGTG
AGTAAGACAATCTAATCTCCCTTAGTGATGGTGCGTGTTAAACAACATCCTTCCCTACTTGAAT
TTGTAATTAGCATATATTTAGATTGGTCATTGGTGTATCATAAAATAACTTCCTTTATTGTTTA
GCCATTAGGTATGGTGTTTTTTATATCCTGTATGGAATGACCATATGGATTACCTGCTTACGAT
GCAAAGATCTTCTATCATCCTGTTTGGTCCTACTTTTTCTTCAAGTCAGGATAACATTTATGTA
CCTACAGAAGCTGATCACACTTGGCAAGTCTTGAGTTTCTTTTAAGCATATATCTTATTTTTAA
ATGCAAATGGCTCATGTAGGCCCAAGTGGTTCTGAACTGGCTCCTTCTACATTTGAGGCCTTTG
TGAAAGTTCCAAATGTTCTACGTCCACATACGCAGATATTTTGCACAAGGTTTGCACTCCTGCT
GGTATTTCTTATTTGTTCTAAACAGCTGAAATAGTGTGGGCATACGGTGTCCATATCCCTGTTT
ACAATATGTACACATGTTTCACACTGACATAGCATGCTACGCTTATAATTTTTCCAAAAAAACT
GATACAACAGCATAGATCTATACTAGGAATGGGAGTGGGCTAATCCACGGGTACCCATTGACTT
GCACTAGTTTAACTAAAATTGCACCTTTTCACTAGCAAGAAAGAAAAAAAAAAGGATTTTTAGT
TGAACTAGTGGGTCAAGGGGTACCCATTTGTGGACTCACTCCGATAGCTGCTCAACACTGATGC
TAAAATGATGGACTTGTAATGCTTTATTCTACAACAAAAAAAACATAAGGTTCAAAACTTTTAA
GTTTTTTACCGTGTTTTCTACGTCTTACATTATCTTGTCAAATAAATTCAGAGCTAGGTTCAGA
TATTAGAAACTAGTCCTAATTTGTAACATAAACAAGATAGATACAATTATCAATGCCGGTCTGA
AAGAATTTTTTCCATTCTCACAAGGCACTGACATTATGATGATACGACATTGGCAATTTGATGG
AATTCACAACTCTGATACATGTTGGAAATGTTTGGCACTGTGTGGATATTGGATATGCGACATG
GAGGCTAGTAGAAGTATTGGTAGCTTGGTGCATAAAATCATTTTCATACACTGTTCAAAATCAG
ATGTAGTATATCCAATTGATCTAGTGTTCTTTTTATACAGTGAATGGGTTCTTGGCACGAGAGA
GGACTTGGTGAAGGATATTGTTGCTGAACTACGACCTGATCTTGGTGAAGTAAGACCAAATTAT
GTTCTTTTAAATAGTATGGACAACATTCATTTTCTTTCTACAACATCTGTACTTGCATTGAATT
TGTGCTTTAGGTTATAGCGTAGATGTTGCCGTGCTTGGAAGAGCTCATGGCTTAGAGCATTTAT
TTTCTGAATAATGGTGATTTGAATCTGTTGGTATTTTGGTCTAAGATTAGTATTAGTCAGAATT
AAAAAAAAAAATTAGTTGGATAAGAACACATAGGGTTTCGTAATCGGTAATCTTATGAAATGTT
GTGCCTGTTTTCCTGTTACTCTCTCCTTTAATGTCTTTTTCTAAGGCACAATTTGACTTGACAC
TATCTTTAAAATTGAACTCAGATTATTATTTCCGTTAAATATATTGTCATAACTACCCAAAATG
GGAAAATCACAAGAAATATTATCAAATATAAATCCAGTGCTACCATTTCCATACACCTACATAT
AATGAGACCAGGTGTGGGCAAAAAGTTACAAATGTTTGAATCTTGAATAGCACCCGCGCCTTAT
AAAAGTGGGCTCTCTATGTAAACAGTACTGTTCTCTGGTGCGCCATCCGTTTACTGTTGTGCAT
GCATATGGACTTATGGAGCCCTTTATAGTTTACTGTTTTTCTATCTTGATGAGCTGAAGTAATT
TCAATCTTATCTAGGAATGGTGGACATATGTGTGTATGGGCCCTTCTGATCCTCAACCAAACTG
GCATCTTGGGATGCGTGGAACCCAGCACAGGGCAGTGATGTGGAGAGTGTGGAAGGAAGGTGGA
ACAGGATTCCTTTATTGGGGTACCAACTGCTACGAGAAGGCTATGATTCCAAGTGCTGAGGTAT
GATGTGGCATCGGGAACCATTTAATACAATGTGATACCAATGTCTATGAAGGTGTATTACATTG
AATACTACAGTAAAATTCAACTTGATAGATCGGCCTCTACAATTTGCATCACGCTCATCTGATT
GTCTTACTTGGCGTGACTGCAGATTTGTTTCCGACGTGGTCTTCCTCCTGGCGATGGGGTTCTG
TTCTATCCTGGTGAAGTGTTTTCTTCATCACATGAACCGGTTGCGTCCACTAGGCTAGAGCGCA
TTCTCAGTGGCATGCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 21602230-21605794(-)
21602290-21605815(+)
Potential amino acid sequence MIECIIPTFGPMLQAKPIFNHSFRYLHATENAL*(-)
MRILAYTCPWPADHPKAKEYYSDPRLAAYAVPYAPILSSTDAAKNSLRREVEILKSEAHWSKSY
FYLWDEPLNMEQYDVICSISNELRSYASDVRILTTYYCGPSGSELAPSTFEAFVKVPNVLRPHT
QIFCTSEWVLGTREDLVKDIVAELRPDLGEEWWTYVCMGPSDPQPNWHLGMRGTQHRAVMWRVW
KEGGTGFLYWGTNCYEKAMIPSAEICFRRGLPPGDGVLFYPGEVFSSSHEPVASTRLERILSGM
QISETVIEDRFCLEHGTKGWYDALDHHFRWLLQYRISPFFCRWGDSMRILAYTCPWPADHPKAK
EYYSDPRLAAYAVPYAPILSSTDAAKNSLRREVEILKSEAHWSKSYFYLWDEPLNMEQYDVICS
ISNELRSYASDVRILTTYYCGPSGSELAPSTFEAFVKVPNVLRPHTQIFCTSEWVLGTREDLVK
DIVAELRPDLGEEWWTYVCMGPSDPQPNWHLGMRGTQHRAVMWRVWKEGGTGFLYWGTNCYEKA
MIPSAEICFRRGLPPGDGVLFYPGEVFSSSHEPVASTRLERILSGMQISETVIEDRFCLEHGTK
GWYDALDHHFRWLLQYRISPFFCRWGDSMRILAYTCPWPADHPKAKEYYSDPRLAAYAVPYAPI
LSSTDAAKNSLRREVEILKSEAHWSKSYFYLWDEPLNMEQYDVICSISNELRSYASDVRILTTY
YCGPSGSELAPSTFEAFVKVPNVLRPHTQIFCTSEWVLGTREDLVKDIVAELRPDLGEEWWTYV
CMGPSDPQPNWHLGMRGTQHRAVMWRVWKEGGTGFLYWGTNCYEKAMIPSAEICFRRGLPPGDG
VLFYPGEVFSSSHEPVASTRLERILSGMQISETVIEDRFCLEHGTKGWYDALDHHFRWLLQYRI
SPFFCRWGDSMRILAYTCPWPADHPKAKEYYSDPRLAAYAVPYAPILSSTDAAKNSLRREVEIL
KSEAHWSKSYFYLWDEPLNMEQYDVICSISNELRSYASDVRILTTYYCGPSGSELAPSTFEAFV
KVPNVLRPHTQIFCTSEWVLGTREDLVKDIVAELRPDLGEEWWTYVCMGPSDPQPNWHLGMRGT
QHRAVMWRVWKEGGTGFLYWGTNCYEKAMIPSAEICFRRGLPPGDGVLFYPGEVFSSSHEPVAS
TRLERILSGMQ(+)
Sponge-miRNAs osa-miR5079b
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021