Detail information of AT2G35630_circ_g.10


General Information
CircRNA Name AT2G35630_circ_g.10
ID in PlantcircBase ath_circ_016620
Alias NA
Organism Arabidpsis thaliana
Position chr2: 14968946-14969201  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene AT2G35630
Parent gene annotation Protein MOR1
Parent gene strand +
Alternative splicing AT2G35630_circ_g.1 AT2G35630_circ_g.2 AT2G35630_circ_g.3 AT2G35630_circ_g.4 AT2G35630_circ_g.5 AT2G35630_circ_g.6 AT2G35630_circ_g.7 AT2G35630_circ_g.8 AT2G35630_circ_g.9 AT2G35630_circ_g.11 AT2G35630_circ_g.12 AT2G35630_circ_g.13 AT2G35630_circ_g.14 AT2G35630_circ_g.15 AT2G35630_circ_g.16 AT2G35630_circ_g.17 AT2G35630_circ_g.18 AT2G35630_circ_g.19 AT2G35630_circ_g.20 AT2G35630_circ_g.21 AT2G35630_circ_g.22 AT2G35630_circ_g.23 AT2G35630_circ_g.24 AT2G35630_circ_g.25 AT2G35630_circ_g.26 AT2G35630_circ_g.27 AT2G35630_circ_g.28 AT2G35630_circ_g.29 AT2G35630_circ_g.30 AT2G35630_circ_g.31 AT2G35630_circ_g.32 AT2G35630_circ_g.33 AT2G35630_circ_g.34 AT2G35630_circ_g.35
Support reads 1
Tissues aerial
Exon boundary   No-No
Splicing signals   AT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTCTGAATAATTGAATTGATATGCATGAGTATTTCTTTTTGGTTTCAAGACCTTTTTCTAGC
CTGTGTGAATTTTAAAGTTGAAAAAGTAAAGCTGCAgttactaccacatacgataataattgtt
taattttcctaattattcattggcacatacatctaatatattttgacatttattggtaaggtaa
aaccagat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTACTACCACATACGATAATAATTGTTTAATTTTCCTAATTATTCATTGGCACATACATCTAA
TATATTTTGACATTTATTGGTAAGGTAAAACCAGATCCAGTTTCACCGTAATTCAGCCTATGCT
TTGTGAATACTCAATGTGCCTCTGTCAAATTTCTGAATAATTGAATTGATATGCATGAGTATTT
CTTTTTGGTTTCAAGACCTTTTTCTAGCCTGTGTGAATTTTAAAGTTGAAAAAGTAAAGCTGCA
Conservation Information
Conserved circRNAs NA
PMCS 0.329077907
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017