Plant Circular RNA Database

Detail information of AT2G35630_circ_g.8

			
						 General Information
					
						CircRNA Name
						AT2G35630_circ_g.8
					
						ID in PlantcircBase
						ath_circ_016618
					
						Alias
						2:14968881-14970700
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 14968881-14970700  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT2G35630						
					
						Parent gene annotation
						
							Protein MOR1
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT2G35630_circ_g.1 AT2G35630_circ_g.2 AT2G35630_circ_g.3 AT2G35630_circ_g.4 AT2G35630_circ_g.5 AT2G35630_circ_g.6 AT2G35630_circ_g.7 AT2G35630_circ_g.9 AT2G35630_circ_g.10 AT2G35630_circ_g.11 AT2G35630_circ_g.12 AT2G35630_circ_g.13 AT2G35630_circ_g.14 AT2G35630_circ_g.15 AT2G35630_circ_g.16 AT2G35630_circ_g.17 AT2G35630_circ_g.18 AT2G35630_circ_g.19 AT2G35630_circ_g.20 AT2G35630_circ_g.21 AT2G35630_circ_g.22 AT2G35630_circ_g.23 AT2G35630_circ_g.24 AT2G35630_circ_g.25 AT2G35630_circ_g.26 AT2G35630_circ_g.27 AT2G35630_circ_g.28 AT2G35630_circ_g.29 AT2G35630_circ_g.30 AT2G35630_circ_g.31 AT2G35630_circ_g.32 AT2G35630_circ_g.33 AT2G35630_circ_g.34 AT2G35630_circ_g.35 						
					
						Support reads
						1/1
					
						Tissues
						seedling;root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G35630.1:7
AT2G35630.2:7

General Information
CircRNA Name	AT2G35630_circ_g.8
ID in PlantcircBase	ath_circ_016618
Alias	2:14968881-14970700
Organism	Arabidpsis thaliana
Position	chr2: 14968881-14970700 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT2G35630
Parent gene annotation	Protein MOR1
Parent gene strand	+
Alternative splicing	AT2G35630_circ_g.1 AT2G35630_circ_g.2 AT2G35630_circ_g.3 AT2G35630_circ_g.4 AT2G35630_circ_g.5 AT2G35630_circ_g.6 AT2G35630_circ_g.7 AT2G35630_circ_g.9 AT2G35630_circ_g.10 AT2G35630_circ_g.11 AT2G35630_circ_g.12 AT2G35630_circ_g.13 AT2G35630_circ_g.14 AT2G35630_circ_g.15 AT2G35630_circ_g.16 AT2G35630_circ_g.17 AT2G35630_circ_g.18 AT2G35630_circ_g.19 AT2G35630_circ_g.20 AT2G35630_circ_g.21 AT2G35630_circ_g.22 AT2G35630_circ_g.23 AT2G35630_circ_g.24 AT2G35630_circ_g.25 AT2G35630_circ_g.26 AT2G35630_circ_g.27 AT2G35630_circ_g.28 AT2G35630_circ_g.29 AT2G35630_circ_g.30 AT2G35630_circ_g.31 AT2G35630_circ_g.32 AT2G35630_circ_g.33 AT2G35630_circ_g.34 AT2G35630_circ_g.35
Support reads	1/1
Tissues	seedling;root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G35630.1:7 AT2G35630.2:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCGTTCTTCAACTTTGACCTGGTTGACATTCTGCCTTGAAACAAGTAACAAAGCTCTTATTCTA
AAGGCTCACAAAGAATATGTCCCTTTATGTATGGAGaaaaaagagctggaggctgagcttgcca
atgttacagcgggtgccaagcctactcgaaagataaggttactaccacatacgataataattgt
ttaatttt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 708
Transcript exons: 14968881-14968945,14969232-14969314,14969409-14969494,14
969642-14969755,14970040-14970159,14970323-14970425,1497
0564-14970700
AAAAAAGAGCTGGAGGCTGAGCTTGCCAATGTTACAGCGGGTGCCAAGCCTACTCGAAAGATAA
GATCTGAGCAAGACAAGGAACCAGAGGCAGAAGCTAGTTCTGATGTTGTGGGTGATGGGCCCAG
TGAAGAAGCTGTTGCTGACGCGCCTCAAGAAATAGATGAGTATGATCTTATGGATCCTGTGGAC
ATTTTGACACCTTTGGAGAAGTCTGGGTTCTGGGACGGAGTGAAAGCTACAAAGTGGTCCGAAC
GTAAAGAAGCTGTTGCAGAGCTAACAAAGCTTGCTTCGACTAAAAAGATAGCTCCTGGTGATTT
TTCAGAAATTTGTCGGACTTTAAAGAAGCTTATCACGGATGTGAACTTGGCCGTTGCAGTTGAA
GCTATTCAAGCCATTGGAAATCTTGCATGTGGTTTAAGAACACATTTCTCTGCTAGTTCACGGT
TTATGCTGCCTGTTTTACTTGAAAAATTGAAAGAGAAAAAGCAATCAGTCACAGACCCACTTAC
ACAAACGCTACAAACAATGTACAAAGCCGGGTGTTTGAATCTTGTTGACGTTATAGAAGATGTG
AAGACAGCAGTGAAAAACAAAGTTCCACTTGTGCGTTCTTCAACTTTGACCTGGTTGACATTCT
GCCTTGAAACAAGTAACAAAGCTCTTATTCTAAAGGCTCACAAAGAATATGTCCCTTTATGTAT
GGAG
						
					

						Genomic sequence
						
							AAAAAAGAGCTGGAGGCTGAGCTTGCCAATGTTACAGCGGGTGCCAAGCCTACTCGAAAGATAA
GGTTACTACCACATACGATAATAATTGTTTAATTTTCCTAATTATTCATTGGCACATACATCTA
ATATATTTTGACATTTATTGGTAAGGTAAAACCAGATCCAGTTTCACCGTAATTCAGCCTATGC
TTTGTGAATACTCAATGTGCCTCTGTCAAATTTCTGAATAATTGAATTGATATGCATGAGTATT
TCTTTTTGGTTTCAAGACCTTTTTCTAGCCTGTGTGAATTTTAAAGTTGAAAAAGTAAAGCTGC
AATGAGATTATTTCTGTATTTGGCTTTCAAGATCTGAGCAAGACAAGGAACCAGAGGCAGAAGC
TAGTTCTGATGTTGTGGGTGATGGGCCCAGTGAAGAAGCTGTTGCTGACGGTAAGTAGCTTGTA
CCTCAATGAATTGTTCTTCATCAAGTAATAATGAGAAGTCTGCTTACATTGTTTTTTCTTTTAT
CTACCCGTACTATCAGCGCCTCAAGAAATAGATGAGTATGATCTTATGGATCCTGTGGACATTT
TGACACCTTTGGAGAAGTCTGGGTTCTGGGACGGAGTGGTGAGTTTTGATGCTTAATGCACATT
TTACTATGTTTTATTTCTTGTGGTTGTCTTTCACTGAAAGAACTTTTTTATACTATACCACTTA
CTTCTCATGTTGATTGCATGTGGCACATTACACTAACTAACGATGTATCCCTTATAGAAAGCTA
CAAAGTGGTCCGAACGTAAAGAAGCTGTTGCAGAGCTAACAAAGCTTGCTTCGACTAAAAAGAT
AGCTCCTGGTGATTTTTCAGAAATTTGTCGGACTTTAAAGAAGGTAGTTAACTTTCCATGATAA
GAAGTTTAGGCAGCATTGATTATATGTATATGTTATAATCCTTGTTATGTTTTATTCCGTAAGT
GGAATATTATCTAATTGGTGATGATGCAGCCTGCAAACATCTGTGCTTATTGATTAATCTGAAG
TTCGAAGTTCATGCGTTTCAAAATGTTTTCTGGTCGCAATCATAGTTTGTGGATGCTGCTATTG
TTCAGGATTCAATACTGCATAACTAATTTTGCTTTCGTTTTGATAATATTTGTAAATATTTCCA
ATTGCAGCTTATCACGGATGTGAACTTGGCCGTTGCAGTTGAAGCTATTCAAGCCATTGGAAAT
CTTGCATGTGGTTTAAGAACACATTTCTCTGCTAGTTCACGGTTTATGCTGCCTGTTTTACTTG
TGAGTCATGTAGCATCTTTGATCGAAAAGTATAATTGGAGGAAGACGCTTCCAGTCTTATGAGT
GTTAATACTATTTCTTAGATATTAATGGGCTTAAGTAGCTGACTTGGTTTTAGTCCAGGAATTG
ATACAAAATTGCTGTCTGTTTGTTCCTTGAACAGGAAAAATTGAAAGAGAAAAAGCAATCAGTC
ACAGACCCACTTACACAAACGCTACAAACAATGTACAAAGCCGGGTGTTTGAATCTTGTTGACG
TTATAGAAGGCAAGAGTCAGTTTATCTTGGATTTTATTTTATGAAGCTCTACTGATTTGCTTAT
GATTATCTTTTTTAGATGGCGACCAATTTTGCTTAAGCATCTGTCTTTCATCAGTTTCCAATCA
ACTTTACTCTCTTTTGCAGATGTGAAGACAGCAGTGAAAAACAAAGTTCCACTTGTGCGTTCTT
CAACTTTGACCTGGTTGACATTCTGCCTTGAAACAAGTAACAAAGCTCTTATTCTAAAGGCTCA
CAAAGAATATGTCCCTTTATGTATGGAG
						
					

			
		

Sequences
Splice junction sequence	GCGTTCTTCAACTTTGACCTGGTTGACATTCTGCCTTGAAACAAGTAACAAAGCTCTTATTCTA AAGGCTCACAAAGAATATGTCCCTTTATGTATGGAGaaaaaagagctggaggctgagcttgcca atgttacagcgggtgccaagcctactcgaaagataaggttactaccacatacgataataattgt ttaatttt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 708 Transcript exons: 14968881-14968945,14969232-14969314,14969409-14969494,14 969642-14969755,14970040-14970159,14970323-14970425,1497 0564-14970700 AAAAAAGAGCTGGAGGCTGAGCTTGCCAATGTTACAGCGGGTGCCAAGCCTACTCGAAAGATAA GATCTGAGCAAGACAAGGAACCAGAGGCAGAAGCTAGTTCTGATGTTGTGGGTGATGGGCCCAG TGAAGAAGCTGTTGCTGACGCGCCTCAAGAAATAGATGAGTATGATCTTATGGATCCTGTGGAC ATTTTGACACCTTTGGAGAAGTCTGGGTTCTGGGACGGAGTGAAAGCTACAAAGTGGTCCGAAC GTAAAGAAGCTGTTGCAGAGCTAACAAAGCTTGCTTCGACTAAAAAGATAGCTCCTGGTGATTT TTCAGAAATTTGTCGGACTTTAAAGAAGCTTATCACGGATGTGAACTTGGCCGTTGCAGTTGAA GCTATTCAAGCCATTGGAAATCTTGCATGTGGTTTAAGAACACATTTCTCTGCTAGTTCACGGT TTATGCTGCCTGTTTTACTTGAAAAATTGAAAGAGAAAAAGCAATCAGTCACAGACCCACTTAC ACAAACGCTACAAACAATGTACAAAGCCGGGTGTTTGAATCTTGTTGACGTTATAGAAGATGTG AAGACAGCAGTGAAAAACAAAGTTCCACTTGTGCGTTCTTCAACTTTGACCTGGTTGACATTCT GCCTTGAAACAAGTAACAAAGCTCTTATTCTAAAGGCTCACAAAGAATATGTCCCTTTATGTAT GGAG
Genomic sequence	AAAAAAGAGCTGGAGGCTGAGCTTGCCAATGTTACAGCGGGTGCCAAGCCTACTCGAAAGATAA GGTTACTACCACATACGATAATAATTGTTTAATTTTCCTAATTATTCATTGGCACATACATCTA ATATATTTTGACATTTATTGGTAAGGTAAAACCAGATCCAGTTTCACCGTAATTCAGCCTATGC TTTGTGAATACTCAATGTGCCTCTGTCAAATTTCTGAATAATTGAATTGATATGCATGAGTATT TCTTTTTGGTTTCAAGACCTTTTTCTAGCCTGTGTGAATTTTAAAGTTGAAAAAGTAAAGCTGC AATGAGATTATTTCTGTATTTGGCTTTCAAGATCTGAGCAAGACAAGGAACCAGAGGCAGAAGC TAGTTCTGATGTTGTGGGTGATGGGCCCAGTGAAGAAGCTGTTGCTGACGGTAAGTAGCTTGTA CCTCAATGAATTGTTCTTCATCAAGTAATAATGAGAAGTCTGCTTACATTGTTTTTTCTTTTAT CTACCCGTACTATCAGCGCCTCAAGAAATAGATGAGTATGATCTTATGGATCCTGTGGACATTT TGACACCTTTGGAGAAGTCTGGGTTCTGGGACGGAGTGGTGAGTTTTGATGCTTAATGCACATT TTACTATGTTTTATTTCTTGTGGTTGTCTTTCACTGAAAGAACTTTTTTATACTATACCACTTA CTTCTCATGTTGATTGCATGTGGCACATTACACTAACTAACGATGTATCCCTTATAGAAAGCTA CAAAGTGGTCCGAACGTAAAGAAGCTGTTGCAGAGCTAACAAAGCTTGCTTCGACTAAAAAGAT AGCTCCTGGTGATTTTTCAGAAATTTGTCGGACTTTAAAGAAGGTAGTTAACTTTCCATGATAA GAAGTTTAGGCAGCATTGATTATATGTATATGTTATAATCCTTGTTATGTTTTATTCCGTAAGT GGAATATTATCTAATTGGTGATGATGCAGCCTGCAAACATCTGTGCTTATTGATTAATCTGAAG TTCGAAGTTCATGCGTTTCAAAATGTTTTCTGGTCGCAATCATAGTTTGTGGATGCTGCTATTG TTCAGGATTCAATACTGCATAACTAATTTTGCTTTCGTTTTGATAATATTTGTAAATATTTCCA ATTGCAGCTTATCACGGATGTGAACTTGGCCGTTGCAGTTGAAGCTATTCAAGCCATTGGAAAT CTTGCATGTGGTTTAAGAACACATTTCTCTGCTAGTTCACGGTTTATGCTGCCTGTTTTACTTG TGAGTCATGTAGCATCTTTGATCGAAAAGTATAATTGGAGGAAGACGCTTCCAGTCTTATGAGT GTTAATACTATTTCTTAGATATTAATGGGCTTAAGTAGCTGACTTGGTTTTAGTCCAGGAATTG ATACAAAATTGCTGTCTGTTTGTTCCTTGAACAGGAAAAATTGAAAGAGAAAAAGCAATCAGTC ACAGACCCACTTACACAAACGCTACAAACAATGTACAAAGCCGGGTGTTTGAATCTTGTTGACG TTATAGAAGGCAAGAGTCAGTTTATCTTGGATTTTATTTTATGAAGCTCTACTGATTTGCTTAT GATTATCTTTTTTAGATGGCGACCAATTTTGCTTAAGCATCTGTCTTTCATCAGTTTCCAATCA ACTTTACTCTCTTTTGCAGATGTGAAGACAGCAGTGAAAAACAAAGTTCCACTTGTGCGTTCTT CAACTTTGACCTGGTTGACATTCTGCCTTGAAACAAGTAACAAAGCTCTTATTCTAAAGGCTCA CAAAGAATATGTCCCTTTATGTATGGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.283384504

Conservation Information
Conserved circRNAs	NA
PMCS	0.283384504

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT2G35630_circ_g.8

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