Detail information of Os04g0563700_circ_g.6


General Information
CircRNA Name Os04g0563700_circ_g.6
ID in PlantcircBase osa_circ_024875
Alias NA
Organism Oryza sativa
Position chr4: 28220558-28221295  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0563700
Parent gene annotation Cyclin. (Os04t0563700-01)
Parent gene strand -
Alternative splicing Os04g0563700_circ_g.1 Os04g0563700_circ_g.2 Os04g0563700_circ_g.3 Os04g0563700_circ_g.4 Os04g0563700_circ_g.5
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0563700-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGGTTTACTCTAGCATCGGCTTCTTGGCGATCGCGGACGGGTGCGGCGGCGCCCCGACGAGGT
TGTTGATGTCCCTGAGCGGCCTCCGGTTCCCCATCTctcattttctctatagaacttgtacaac
tcttcgacgtactcggttgctgcaagcggattccctgagtcggcactgtcaatgtccatcatgg
actcatcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCATTTTCTCTATAGAACTTGTACAACTCTTCGACGTACTCGGTTGCTGCAAGCGGATTCCCT
GAGTCGGCACTGTCAATGTCCATCATGGACTCATCCTCATCAGTATCATTGCATTCATCCTACA
AGTGCCAAATGTAACAGTAAGAGAGACCATCGGTTTTACACAGCAAGTCAACTGATCATCACAC
AGTATGCATACCACGGCAATATAGTCGTTCGATTCGCACGATTCCACATCGTCGTCAACTGTGC
CATCGGGGATGGGGTTCTTCTGTGGATCAGTGCAGACGACCGCTGCATCAGCCACGGAAACCTG
ATGGTCAAGCTGTTCTTTTCGCGTCAAGGAGGCCGCGAAATTCCTGGATCACTCAGAGCGAGCG
TACCATCATCAGATCAAGGCTGCAAGAAACACATCAGAGCGGGCAGCAATGGCGCACACGTCCT
AACCTCGTCATAGGCCGGTGGCTCACCACCAATGCAGGCTTCTGCTCTTCCTTCCCACTCTTCC
TGACAAAAGCGAAAAAACAGACCACAAAGGATTGGGATCTCGATCCAAGAAGCAGCGAAGAAAA
AGACACGATCTTTTTTATCTTTTTTCACGAGATCTCCGAGATTCTCGGCGCGGGGGGAGACGGT
GGTTTACTCTAGCATCGGCTTCTTGGCGATCGCGGACGGGTGCGGCGGCGCCCCGACGAGGTTG
TTGATGTCCCTGAGCGGCCTCCGGTTCCCCATCT
Conservation Information
Conserved circRNAs NA
PMCS 0.113404731
Functional Information
Coding potential Y
Potential coding position 28221266-28221015(+)
28220564-28220884(-)
28221295-28221208(-)
Potential amino acid sequence MSLSGLRFPISHFLYRTCTTLRRTRLLQADSLSRHCQCPSWTHPHQYHCIHPRQYSRSIRTIPH
RRQLCHRGWGSSVDQCRRPLHQPRKPDGQAVLFASRRPRNSSS*(+)
MRDGEPEAAQGHQQPRRGAAAPVRDRQEADAREEWEGRAEACIGGEPPAYDEEFRGLLDAKRTA
*(-)
MGNRRPLRDINNLVGAPPHPSAIAKKPMLEKSGKEEQKPALVVSHRPMTRNFAASLTRKEQLDH
QVSVADAAVVCTDPQKNPIPDGTVDDDVESCESNDYIAVDECNDTDEDESMMDIDSADSGNPLA
ATEYVEELYKFYRENERWGTGGRSGTSTTSSGRRRTRPRSPRSRC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017