Detail information of AT3G63460_circ_g.12


General Information
CircRNA Name AT3G63460_circ_g.12
ID in PlantcircBase ath_circ_028979
Alias NA
Organism Arabidpsis thaliana
Position chr3: 23435817-23436056  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT3G63460
Parent gene annotation Protein transport protein SEC31 homolog B
Parent gene strand -
Alternative splicing AT3G63460_circ_g.9 AT3G63460_circ_g.10 AT3G63460_circ_g.11 AT3G63460_circ_g.13 AT3G63460_circ_g.14 AT3G63460_circ_g.15 AT3G63460_circ_g.16
Support reads 4
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G63460.3:2
AT3G63460.2:2
AT3G63460.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTAGGTGAACTGTCGTCATCTGATGCAACCATTATCTGAGTAGTAACGTTAGGGTTCCACTGT
AAAACAGAGCACCGGCGTCGAACTGAATCTGCAAAGctctttggtgtccagtaaactcgcgcac
aggtgacattatattcctcatgtcccagagctgattgcagataccttacatcactaaaagaacc
aaaattga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTTTGGTGTCCAGTAAACTCGCGCACAGGTGACATTATATTCCTCATGTCCCAGAGCTGATT
GCAGATACCTTACATCACTAAAAGAACCAAAATTGAACTATATGAAGCAACGCGTTAAATGATT
CCTTACCTTCAAAGTAGGTGAACTGTCGTCATCTGATGCAACCATTATCTGAGTAGTAACGTTA
GGGTTCCACTGTAAAACAGAGCACCGGCGTCGAACTGAATCTGCAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.186179722
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017