Detail information of AT3G63460_circ_g.11


General Information
CircRNA Name AT3G63460_circ_g.11
ID in PlantcircBase ath_circ_028978
Alias NA
Organism Arabidpsis thaliana
Position chr3: 23435622-23435816  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene AT3G63460
Parent gene annotation Protein transport protein SEC31 homolog B
Parent gene strand -
Alternative splicing AT3G63460_circ_g.9 AT3G63460_circ_g.10 AT3G63460_circ_g.12 AT3G63460_circ_g.13 AT3G63460_circ_g.14 AT3G63460_circ_g.15 AT3G63460_circ_g.16
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-TC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATCTACAAGGCTGTCCACTTACCAACCATAGAAAATGATACCAAGCTAGAGAGAAGCACTGAG
AAAAGCATTTTGATATCAATGATTTGAAAATACaccactacacttcaccaaggtgtaacaccaa
gaatgaagacaacaggactataatataaaggcaccaaaatatgagtgggttaaagactaagacg
tct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 195
Transcript exons: 23435622-23435816
ACCACTACACTTCACCAAGGTGTAACACCAAGAATGAAGACAACAGGACTATAATATAAAGGCA
CCAAAATATGAGTGGGTTAAAGACTAAGACGTCTGATCTACAAGGCTGTCCACTTACCAACCAT
AGAAAATGATACCAAGCTAGAGAGAAGCACTGAGAAAAGCATTTTGATATCAATGATTTGAAAA
TAC

Genomic sequence ACCACTACACTTCACCAAGGTGTAACACCAAGAATGAAGACAACAGGACTATAATATAAAGGCA
CCAAAATATGAGTGGGTTAAAGACTAAGACGTCTGATCTACAAGGCTGTCCACTTACCAACCAT
AGAAAATGATACCAAGCTAGAGAGAAGCACTGAGAAAAGCATTTTGATATCAATGATTTGAAAA
TAC
Conservation Information
Conserved circRNAs NA
PMCS 0.304626533
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017