Detail information of BGIOSGA006230_circ_ig.5


General Information
CircRNA Name BGIOSGA006230_circ_ig.5
ID in PlantcircBase osi_circ_004014
Alias 2:23167215|23172105
Organism Oryza sativa ssp. indica
Position chr2: 23167215-23172105  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA006230_circ_ig.3 BGIOSGA006230_circ_ig.4
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCATTAGTTTGATATGCTTTAAAAGCAATGAATTGACTATCAGAAGGTCAAAAGATATAATTG
CAGAAGCTTCAATCTTTTTCCATGGTAACAACACCCctcagatctgttgggaacaatcttacac
cacctgtcgtcagaaaagcactagcagcaggccttcatcgattcagatgtagcaaagacctttg
gttattga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAGATCTGTTGGGAACAATCTTACACCACCTGTCGTCAGAAAAGCACTAGCAGCAGGCCTTC
ATCGATTCAGATGTAGCAAAGACCTTTGGTTATTGATTGGTGGTTCCAAATTATTGGAAAAACA
TCAACCGTTTGGGGACACCAGATAGATTATTTCTGAAAAAAGTTGATGCAGTGATTAACTTTCA
TGATGCAATACTAATACCAAGCACATTGTGTATATCGGCAATCTCTCCAATTAATTCATGCACA
TTAAAATCTGAAATACAAATCAATCAATGTATTAATCCATCATTACCAATTTAACACTTGAAAA
AACTGCCTCTTGTATATATGTAAACTAGAATATCCTTCTAGATTGAAGAACACATTTCGCCATG
TGGAGTCTTCCATCGAAGTGGATAACAACACTAGCGCTATTTTCTCTCAAATTTGAATGTTCAA
CGTGGACTTTATTGGAAACTTTTACACATCAGAGTATCGTGTTCCATATGTAGAACTTGAACTG
CTCCAAATCTAGATGTGCATGACAATTCATAATTTCATACAGTACAAAAAGTTCTGATGCACTG
AAAAACATTGCAGCACACAAGCACATGCTATCCCTCCATACAGACAAAACTGAAGTGGGATGAA
CCAAGCAAAACTAAAGAACATAATCCAGATGTGCTAATAGCCTGACAAACCAAATAGCACAACT
GATTATGTTGTGCCGAAACTGAAGAACTCCATGCCATATTTTGCCATAGTTACCACAGAACAAA
GCCTTGGCAGGGAAAACTATAACAGTTAAGCATTCTACATATTCTATTGCTAACTTAATTAACC
AATGTGTAACTGGAGAACCAACAGATCCGTAAGATGGTAAGGAATGACACTATGACACAAAATT
TAAATTTTTAATAATTGTTCATTTTTAGTTATGAAAGGTATAGGTGTAAAATGAAATGTATAGT
GCCAACGAATGTGATATGTATATGTCATATTTAATGAATGCCTCCTACAGAAATGCATCAGCTG
ATCTATCCTTCTTAGTTCTTACATGATAATTATTAATTGGAAATAATAAGTGTGCAACATGACA
ATACATCGCGTAAGTTGCGTGTCTGCTATAGGAACTGAGGTGTCATTCTCTTACGTCAATTATA
CTCGACGTAAACTATAAGAAGAGAACATGATAACATAGATCTAAAACAGTGGCATCACAATTAA
CAAAATTTACAATATGCAATAGATACCAAGTGACCTTGTAGCATGGCAGTTTCTTGAATATTAA
AATGCTACATGACTTGTCCATGATCATTTCTTAGCGGCCACAACTGAAAAAAAAAACAATGATG
TACAGATGCTTGTCAACTGACTTATTAGGAAATTCAAGTTTATAATGTTAGTCATGGGAAATAT
GTGAATAACAATCAAGCTATGTTCATGACCTGCAAATACCAACTTCAGATAGTTCATGCTCTAG
ATTATTAAGTTTCAATCCCATAGAACTTTCCAATTCTTGATTTTGTGCTAAGCAGCAAACAATG
CACCTTAAACAAGGATAGATTCAAGAATGACATGGCAGTCTTAAATGCATCTTCCTATATACTA
GAAAAGGGTTATGTATTAGCTCTTACAAGATCAATTTAAGTTGCACTTTACATGAAATATGTTA
AATGAACATTTTTACCATTGTTTACCGATGATAGATGGCATAATTTAAAGAGGCCATGCCAGAA
CAACACTGTCATAGCCTTTTCAAGTCACTTTAAAGCACACATCTATATTTTGCTAGAAAGATAT
AATATGGGATCATTTCCAGTATTTGACTTGTGTGTAACAGGCATCAAATATATGAAAAGAAAAC
CTGATAACATTGAATACTGCCATCTGTAAACAGTCATTTGTGTGCCACTTCTAGGAATAATACG
ATTGACAGGTCTTGATGTCCTCTATATCATGCATGCAACTCAGACTGCCTGCCTGTTAAAATAT
TTCAGCAGGTTAAAGTATGAGCATTTTGAGTTCATACTAGTAAAAACCAACATTTATGAACTGT
TTTAAGAATTTATAGTTGTTGTAAACAAATTTGTCCAAACATCACAAGTGAATGCATATGAACA
CATTGAAACAAAAGCATAGAGTCCCCAATTCCCATACTGAGAATAAACTACTGTCACTCCACGA
GCACTACTGAGCTTTTATTGTTTTTCAAAGGTTGACTTTCTATATTATTTGACTTCCAGGGCCC
ACATATTCTTAAAGCGGGTTACTCCACGTCCATGTTACTGCTGCCCTGAGGTTATTGAATGCAG
TATAGCTTAAAGATCTAATAACAATATAACATTCATGCTTGAGCAACTCCTAATTATTTGTAAT
ATAAAGTCTATCTAATATGTTCAGTTTAGTTCCTTCTCTTTGTACGTGGAAGTGTATCATTTAG
TCATAATGCCCTCATGAATATGGATAAACAATGAGAGGTTTGTGTCCCTGTAGGCGTAGCGCTG
TCAATTACATATTTTCTACCAATGTTAAAAAGAAAATTCAAGATATTCACATTCAAGAGAAACT
AAGCATGGAACAGGTTGCAGCACATATGAGATTGGTGGATACTGGATAGAAGAGCACAAACTAG
GCAAACTCACATCGCCATTGAAGAAAGAGTATAAAATAAAGTCATGCCACGGCCACTTCCTCTA
TGAATAGTACTGTAATTCTTGCCGGATGCAGCATGTGATCGTATTTGTTATATCAAATGTTCTT
TCAGGAGCACCATGGCATTGTTTGCCTACAGCATGTGCTACGGGATAAGCCTTATGTATCACTC
AAGACACTCATTAATAGAGCATTAGGGCAAGATTAATTTATTTCCCCACCAAACCTCCCTCCCT
CTCAGTCTGTGCGTGTGTTACTATTAACAGTAGCTTCGGCTAAGGTCCACGGTATATATGCAGT
TAAGCAGAGAAAAGATAAGGAGGGCACAAGGATCAAAAGTAAAAAGGAACAGATGCTCAGGGCA
TGTTTTCAGTAGAAAATGTGATTTACCTGTAGCGTCAGAGCGACTGCATATTTGCATTGCTGCT
GTTATCTGCAGTCACCTGTGATAGGGTAAAAGGAGAGAATAAGTACAATTGTACTACCACTCTT
CCTAGAAACAACATGCATTGTACTACATTCTGTCGGTACAGAACAAATCAGAAACCGGTGTACT
CTAGTTTTGGAATGCGGCATTGCAGTCTGCTAACTGCACGCGGGAGAAAAGGCAAACAGAGCAG
CATGCTAGTAAAGAGTGAACTGCAGAGGACACACAGTTCATGTCTAAAATGCAAACCAATGCAA
GACACCACGATCTAAAATATCAGACTTTATACAGAAATTAGAAGCTGAATCTTGCACGAGTCTC
CATGCTAAATCCTGGAAAATCGTAACAATGTTTTACATTATAGAATGTTTGGACATGAAATGCA
GGAGCTTGTTCCAGGGATCAATTGAATGATTTCTTCATTCCTTTTTAGTCTCTTCCTTTGCACA
AACATAACAGCTCAAACACCAAACAGATATTCAATAGAAATCATGAAAAATGAACACAGATATG
AAGCTTTTCCAATGAAAATAACATGAGGCTTCCTTTCGAGGGCATCATTTATCTTAGTTTCTGG
AAAAAAAAATCATGTTCCCAGTTCAACGGATTTCACCAACAAATACGGCTGACTTGACACTTCA
ACAGATTAATCCCTCAAAAGAAAAGAAAGGAAGATCAAAGCACCAAAATTCCAATGAACAATGC
TCAAATGTGATTGGTATTGAAATATTATTTTATGAGCCAACTTAGAGAGTTTTAAGAAGTCCAT
AAGTACAAGATGCACGCAAGAAGCGTATGTAACAAGAATACCGATTGCAGTGATCTCACAATAG
GACAATATATACATATTATATGAACTAGAAACCCAGCACCAATCATTATCTGCATTTGCATATA
GATCTGCAATTGGAGGCGTCAACGGCACAGCAAACTGGATGCTTCAAATTTCTGAAGAGGCCCT
GTACCTATCGGGCGGTGGCATTACAAACATCTCGGTTGTAAACATCACCTTTTATTATTCAACA
TAACTCATGAATCTCTCTTTCTGTGCTAGGTAAGTTGACTAAGCAAACTCAAAGACATCAATTA
TCATTCTGGAGTCCTTACCTTCATTAATTGTGCAATGTGCATTAATTGTGCAGGAATGTTTAGC
ATTTGAAAAGTACATGGAGCCTGGAGAAGATGCTTCATTCCCCCTAAACTATAGCGTGAAAAGT
GAGTGAGGCAGAGCAATGGAAGGGGGCCAGTAGTCATGCAAGTAGCAGCACCCTCTGACTGGAT
CAATCAAATCCTGGCTGTATTTTCATTCATTATCTTGTCAATTTTGCTGACAAGCTAGACTTAA
CTATAACACACAAGTATATTTTTATGGACGTAAGCATTCAGGCAATAAAGATTGCTCATGCATG
CATTGTGTACTCATGATCTAATGTCTAATCAAATGCAGAAGCATCTTTCTGTTAGCTCAGTTCA
AGAGGGCCTCAATACTAGATATGTAAAGGTGACAGTTCAGTTGCAAAATGCAGAGATTTGTGTT
TTTTTTATGGTTTCATAAGCCAAAATTGTACCAGACTATCTCTATATGGTGAATACGAAAAAAA
AAATATTGACGTAGGTTTTTCACTGGGACCATGGAAATTACAGATTGCAGAAATGTATTATTAT
GAGAAACAGAGCAAGAATTTGATTCGTTTCTTACCCACCATCACTTCCATCAACTTGCATTAGT
TTGATATGCTTTAAAAGCAATGAATTGACTATCAGAAGGTCAAAAGATATAATTGCAGAAGCTT
CAATCTTTTTCCATGGTAACAACACCC
Conservation Information
Conserved circRNAs osa_circ_015083*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description leaf senescence
Other Information
References Huang et al., 2021