Detail information of Os12g0255200_circ_g.2


General Information
CircRNA Name Os12g0255200_circ_g.2
ID in PlantcircBase osa_circ_010995
Alias NA
Organism Oryza sativa
Position chr12: 8729063-8732743  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os12g0255200
Parent gene annotation Staphylococcal nuclease (SNase-like), OB-fold domain containing
protein. (Os12t0255200-01);Conserved hypothetical protein. (Os12
t0255200-02)
Parent gene strand -
Alternative splicing Os12g0255200_circ_igg.1 Os12g0254400_circ_g.1 Os12g0254400_circ_g.2 Os12g0254400_circ_g.3 Os12g0254400_circ_g.4 Os12g0255200_circ_g.1
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0255200-01:5
Os12t0255200-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGACCGTTTGGTCTGAGGGGTTACTACATGATTGTCTTTGTTCTTGGTCAGCCAGTAGTAGGAG
GGTTTACTGTTGCCATCGTCTTTTTCATGGATACACttttgtccagtattttcgagacttattt
gtagatcagctgctgttttgtcccacaatttttgcttcttagagttacgggattgacagcttgc
attgcaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTTGTCCAGTATTTTCGAGACTTATTTGTAGATCAGCTGCTGTTTTGTCCCACAATTTTTGCT
TCTTAGAGTTACGGGATTGACAGCTTGCATTGCAATCCTGACGCAGTTCTATAGGATCCAGTGT
GTCGACATAAGCAGTAAAGCCATCACCATCTACTATGCACTTTGCATTAACCTGATATAAATGT
TTAGATTTGTGAGAATCATTATTTTACTCAATACTGGTGATATATCATGTGAAATCTGACCGGC
AATGTTTTTAGCACGAACAGCACACCCTTTGGTATTGATGATGGATGATTTTCTGATGCCTCTT
TGGAGATTGTAGGAATTGGAAAGCCATAAAATGCAAGAATGCCCTGTGAACCAAACACACATTT
TTTTCCATGGTGATAGAATCGATTTGTTGAACTATTATGCCAACTTACATTAAATAGAATCCAA
AGAATATCCTGGATGATTAAGGATTTTGCTACAATTTATTTGCGTCATGTTTAGTTTCAAAATA
ATTCTTCAAACTTCCAACTTTTCCATCACATCAAAACTTTCCTACACACACAAACTTCCAACTT
TTCCGTCACATCGTTTCAATTTCAACCAAACTTCTAATTTTGATGTGAACTAAACACAGCCTTA
GTTCACAACTATCATTTAATATTACAAAGTATGAACACCTGATGTTCTAAGAATTTCTGCAGAT
TTGCTCATTTGCATTGACGATACACATAATAATGTTTACAAAGGACCGTTTTGGATTGATGCCA
ATATATGCTCTACCAATCTTTTGGCAACTTGAATAGTAATAGGGATAGCTTGGAATGAAGTGAA
ATAATTGTTGTTGGCCATGCTCTATTCGGTCACATTCTAGAAATTTATTCTCATCATATTGGTA
GCAAATGGAACATTAACTAGACAATTTTAACTAAAAAAATTGGTAGTGCCAAAACATGCCTAAA
TTTTGGCATTACAAAATTTTTTGTAGGGCTTCAAACCAAAATAGTCCAAACTTTTCCTTGAGGA
CAATTTGTAAAACAATCCTGGATAACATTTTACCTGAACGTTCCAAAATGATGCTCATTTCTAA
TAACAGACAATATAAAAAAATATTAATTTCTTCCTGAGTTTAGGAGACTGAATATATTAAACAT
ATGTCCACATTGCCTTGTTGTAGTGTTAATCTGAAAAGTAAAACAGTTACCAGACAAAAATAAA
ACAATGGTAACTGGTTTTATAATTTCTTTAGCAGTCCAGATTTGGAGAAAATCATCAACAATTA
ACAGATTATTCTCTGAGTTGATAGTATTATCCAATGTTATAATTTTGAGTTGATACAAAAAGAA
TGATTTTAATTTAACTAACAATACTGCCCTAATGGTAAACCTAGACATTCTCTTACACTTCTAG
GGAAAATAGATTTTTTATCTACCAACAATCTTTTTGTTAAATGTGCACAATATTATAGCGTATA
GCCTCTCCATACAATTTTTTTTGAAATAAGATCCATACGATTTTTTCATGTCCCAGGAAATGCG
AACAATCTAACGTCCTTATGAAATTTTGTTGTATCTGCATGTACTATATCACCAACAATTGAGA
CATTTTTTCAGAATATAATTTAGGAAAATCAACATTTTCCCTTGACTAATAAGTAAAATAACTA
ACAATGTTTTGTGCCATGCATGTGATATTATTAGATTCGTATTTAAAAGAGCATTCATAATATC
TTATGGAAAATAAATTAAAAGGAAAAAGTTCTATGTTAGAGACCATGTAAAAAACTATTCTGGG
ATAGATTGAGTACTTCAGTTGCTAAGAAATAGAGAAACTAGCATTTGAATAATATTTCTTTACT
TGCTTCATATATATGTAGATAAATTTTGTGACTATCCTAATACCTTCAAATAATTACCTCCAAA
TTAGTTCGTTCGATCCCTCTCAAGGTTGCAGCAACAAGCACAGCAGCATCTGCTGATTCTTTGG
GTGGATATTTTATATCCTTGTATGCGGCCAACAATTTCCTATACCTATCAAAAGTAAAAGTGCA
AAACTATTATCTTAATTTAGTTAGAGAAACAAAAATTTTAGCTGAATGGCCCTTGACTAAGAAT
ATTGTTCTTCGCAAAGAATAGAACTAAAGCATATTGTTCCGAGTTAAAAAAAACAATGAAAATT
ATTAATTTTTAAACCTCTACGTTTAGGATACAGTGGCTTGGGTAATATGTCTTACAGATGATCA
CGAGGCCTACAGGATATAAATTCATTATTTATAAGCTATATAGATTTATACCAAAAAAATAAAG
TACAAATTTGTTTCAAAAAACTGTGTATGTGCTCATTAAAATACATGTATACAGCAGTGTTAAT
TGTGATAGTTCCATTGCTAAAAATCATTGGATATTATAAAGAGGGTATTATACCTGATAGCAAT
CGAAGAGAGTATCAGCTTTGGGTGGCTAACTGGATTTCTATATTGAACTATAGGACTCAATGCA
GCTTTAGAATTATTGACTTATGTATACAAAATGTAATGGTTAATGGAAAATTAAGTTCAGAAGC
TGTTAAATCTGGATCTTCTCCTAACCATGTAACCTGTGCCTGCATAGGTGATGTAACATGCTGT
GCAAGCCCTTCAGGAACCTAAATACCACAAATGAAAATCCCCTTAAGAATAATCAAAAACATAA
TATTCTTCTGCAATACAGGAATGTAGAAGGCAAAACTGCTAACAGGAAGGTAAATATATTGCTG
CAAGACATGCATGCAAACTTTAATAACAAAAGAAATACTTCACATATAGCAATGGAACTATCAC
ATTAATTATCACAAAGACAAGCATACAAACTGTATTTTGGTTATTTACTCATGTACCTGAGGAT
AAGCATCCTCCCTGCTTACTCGGCTTTGTCAGTAAATACATTTCAAATCAAGTGGTTCTCATGT
ATGATGCATAGAACTTTATTGAGTGAAGTACGTGGGCGGTCCCTAAACTTGTGCAGGTGTGTCA
TCTAGGTCCCTGAACTCCTAAAATGCATTTTTAGGTCCCTAAACTTGTCATGTGTGTCATATAG
GTCCTAACGGGTTCAAACCCGCTCCATACGCTGACGTGGCATTGCCACGGTGGCACCTACATGT
CAGTGAAATCTATATGTCAAGCATATATAAAAAATAAAATTAAAAACCATATTTTCTCCTCTTA
GGTAAACAAAAAAAGATTAAAAAAAATTCTAAGGTAGAGAAGAGAAAATATGTTTTTTTTTTAA
TTTTATTTTTTCTATGTGATTGACGCGTGGGTCCGACTAACACGTAGGTGCTATGTGGCATGCC
ACATCAGCGCATGGAGCGGGTTAGAGGTCGTTTGGACCTAGATGACACCTCAAGACAAGTTCGG
GGACCCGAAAATACATTTTGGGAGTTTAGGGACCTAGATGACACGTCCGCACAAGTTTAGGGAC
CGCTCATGCACTTCACTCAACTTTATATATAGGGATACTTTATAGGTGTAGCGAGTTACCTCAA
AGGTCCGAGTAAAGTCGACGAGGTCACGCTCCAGGGCAGCTACCCCACTAGGGGGCCGAGGTGA
CCGTTTGGTCTGAGGGGTTACTACATGATTGTCTTTGTTCTTGGTCAGCCAGTAGTAGGAGGGT
TTACTGTTGCCATCGTCTTTTTCATGGATACAC
Conservation Information
Conserved circRNAs NA
PMCS 0.092973209
Functional Information
Coding potential Y
Potential coding position 8732672-8729091(+)
8731669-8729065(-)
Potential amino acid sequence MIVFVLGQPVVGGFTVAIVFFMDTLLSSIFETYL*(+)
MQAQVTWYRKLLAAYKDIKYPPKESADAAVLVAATLRGIERTNLEGILAFYGFPIPTISKEASE
NHPSSIPKGVLFVLKTLPVNAKCIVDGDGFTAYVDTLDPIELRQDCNASCQSRNSKKQKLWDKT
AADLQISLENTGQKCIHEKDDGNSKPSYYWLTKNKDNHVVTPQTKRSPRPPSGVAALERDLVDF
TRTFEVPEGLAQHVTSPMQAQVTWYRKLLAAYKDIKYPPKESADAAVLVAATLRGIERTNLEGI
LAFYGFPIPTISKEASENHPSSIPKGVLFVLKTLPVNAKCIVDGDGFTAYVDTLDPIELRQDCN
ASCQSRNSKKQKLWDKTAADLQISLENTGQKCIHEKDDGNSKPSYYWLTKNKDNHVVTPQTKRS
PRPPSGVAALERDLVDFTRTFEVPEGLAQHVTSPMQAQVTWYRKLLAAYKDIKYPPKESADAAV
LVAATLRGIERTNLEGILAFYGFPIPTISKEASENHPSSIPKGVLFVLKTLPVNAKCIVDGDGF
TAYVDTLDPIELRQDCNASCQSRNSKKQKLWDKTAADLQISLENTGQKCIHEKDDGNSKPSYYW
LTKNKDNHVVTPQTKRSPRPPSGVAALERDLVDFTRTFEVPEGLAQHVTSPMQAQVTWYRKLLA
AYKDIKYPPKESADAAVLVAATLRGIERTNLEGILAFYGFPIPTISKEASENHPSSIPKGVLFV
LKTLPVNAKCIVDGDGFTAYVDTLDPIELRQDCNASCQSRNSKKQKLWDKTAADLQISLENTGQ
(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017