Detail information of Os04g0151800_circ_g.2


General Information
CircRNA Name Os04g0151800_circ_g.2
ID in PlantcircBase osa_circ_022988
Alias NA
Organism Oryza sativa
Position chr4: 3557449-3557783  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0151800
Parent gene annotation Argonaute and Dicer protein, PAZ domain containing protein. (Os0
4t0151800-01);Argonaute and Dicer protein, PAZ domain containing
protein. (Os04t0151800-02);Similar to Protein argonaute 4B. (Os
04t0151800-03);Similar to H0820C10.3 protein. (Os04t0151800-04)
Parent gene strand -
Alternative splicing Os04g0151800_circ_g.3 Os04g0151800_circ_g.4
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0151800-02:2
Os04t0151800-03:2
Os04t0151800-04:1
Os04t0151800-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCAATAGCAAATTGAGTAGGTACTGATCATTGACTCTTTGTGGAGCAAGGCATTGTGTGACAA
TACCGAATTCAGCAAGACACTTCCTCTTCCAAGGACcgcagcaatggaaggtctatcagattgt
cctggttgaccgtgtgacacatccatacctaagatgatggtaggtgtcttcgatacaagaggta
ttgaaggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGCAGCAATGGAAGGTCTATCAGATTGTCCTGGTTGACCGTGTGACACATCCATACCTAAGATG
ATGGTAGGTGTCTTCGATACAAGAGGTATTGAAGGGGATGCTTCAATTTGCAGCAATGAGTTTA
TTCCACCAAGCTGGTTAGTAACAGGGGAAGAGCAAGTCCATAAGCTTACATAAATGGATAATGC
AGTAAGAAAAGACAAGGTTACGTTAAATACCTTGGCATTTATCTTCAATAGCAAATTGAGTAGG
TACTGATCATTGACTCTTTGTGGAGCAAGGCATTGTGTGACAATACCGAATTCAGCAAGACACT
TCCTCTTCCAAGGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.191357488
Functional Information
Coding potential Y
Potential coding position 3557500-3557758(-)
3557504-3557687(-)
Potential amino acid sequence MCHTVNQDNLIDLPLLRSLEEEVSC*(-)
MDVSHGQPGQSDRPSIAAVLGRGSVLLNSVLSHNALLHKESMISTYSICY*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017