Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0151800_circ_g.3 |
ID in PlantcircBase | osa_circ_022989 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 3557449-3559477 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os04g0151800 |
Parent gene annotation |
Argonaute and Dicer protein, PAZ domain containing protein. (Os0 4t0151800-01);Argonaute and Dicer protein, PAZ domain containing protein. (Os04t0151800-02);Similar to Protein argonaute 4B. (Os 04t0151800-03);Similar to H0820C10.3 protein. (Os04t0151800-04) |
Parent gene strand | - |
Alternative splicing | Os04g0151800_circ_g.2 Os04g0151800_circ_g.4 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os04t0151800-01:10 Os04t0151800-03:7 Os04t0151800-04:1 Os04t0151800-02:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.136053208 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3557500-3559455(-) 3559465-3559462(-) |
Potential amino acid sequence |
MCHTVNQDNLIDLPLLRCFDNYDC*(-) MIVKPGPVIDFLLANQKVDHPDRIDWQKAKRALKNLRIRTTPVNSEFKIIGLSDRNCNEQMFSL RQRNGNNGDVDEVEVTVYDYFVKNKGIELRYSGNLPCINVGKPKRPTYFPIELCSLIPLQRYTK ALSTLQRSSLVEKSRQKPQERMSVLNDALRHSNYDSDPMLRASGISIAQNFTQVEGRVLQPPKL KAGNGEDIFPRNGRWNFNNKKLIQTCSVDKWAVVNFSARCDVRNLIRDLIRNASAKGIQMAEPF DVFEESPSLRRAPVSRRVDDMFEQIKSKLPGAPKFLLCLLPERKNCEVYGPWKRKCLAEFGIVT QCLAPQRVNDQYLLNLLLKINAKLGGINSLLQIEASPSIPLVSKTPTIILGMDVSHGQPGQSDR PSIAAMFRQL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |