Detail information of Os04g0151800_circ_g.3


General Information
CircRNA Name Os04g0151800_circ_g.3
ID in PlantcircBase osa_circ_022989
Alias NA
Organism Oryza sativa
Position chr4: 3557449-3559477  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0151800
Parent gene annotation Argonaute and Dicer protein, PAZ domain containing protein. (Os0
4t0151800-01);Argonaute and Dicer protein, PAZ domain containing
protein. (Os04t0151800-02);Similar to Protein argonaute 4B. (Os
04t0151800-03);Similar to H0820C10.3 protein. (Os04t0151800-04)
Parent gene strand -
Alternative splicing Os04g0151800_circ_g.2 Os04g0151800_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0151800-01:10
Os04t0151800-03:7
Os04t0151800-04:1
Os04t0151800-02:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCTTTTGCCAATCAATTCTGTCAGGGTGATCAACTTTCTGGTTGGCAAGAAGAAAATCGATAA
CAGGACCAGGTTTAACAATCATAGTTGTCGAAACATcgcagcaatggaaggtctatcagattgt
cctggttgaccgtgtgacacatccatacctaagatgatggtaggtgtcttcgatacaagaggta
ttgaaggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGCAGCAATGGAAGGTCTATCAGATTGTCCTGGTTGACCGTGTGACACATCCATACCTAAGATG
ATGGTAGGTGTCTTCGATACAAGAGGTATTGAAGGGGATGCTTCAATTTGCAGCAATGAGTTTA
TTCCACCAAGCTGGTTAGTAACAGGGGAAGAGCAAGTCCATAAGCTTACATAAATGGATAATGC
AGTAAGAAAAGACAAGGTTACGTTAAATACCTTGGCATTTATCTTCAATAGCAAATTGAGTAGG
TACTGATCATTGACTCTTTGTGGAGCAAGGCATTGTGTGACAATACCGAATTCAGCAAGACACT
TCCTCTTCCAAGGACCTGGTTGAAACAAAACAATGTAAATTTTGCAAGGGAGTGAATGACTTTA
GGGAGTGGAAACAATGACGAACCATAAACTTCACAATTTTTCCTCTCAGGAAGAAGGCACAAGA
GGAATTTCGGAGCTCCAGGAAGTTTCGATTTTATCTGTTCAAACATATCATCTACTCTTCTTGA
TACAGGTGCTCGCCTCAATGAGGGGCTCTCTTCAAACACATCAAAAGGTTCGGCCATTTGCTGC
AAAGTTAACAAAGTTCAGTGCAAAGAAATATCAGGCGTAAAATATGTGATAAAAAGCTAAAACA
TACAATCCCCTTCGCAGATGCATTTCTTATGAGGTCCCGGATAAGATTTCGCACATCACAGCGT
GCAGAGAAATTAACTACTGCCCACTTATCGACAGAACAGGTCTGAATCAGTTTCTGAAAAAAGG
GAAAGAAATCAGAATGTTCCTCGACCTCCTCCATACCAAGAATAAAGATATGATAAAGAAAATC
ATTCTGACCTTATTGTTGAAGTTCCACCGACCATTGCGTGGGAATATATCTTCACCATTGCCAG
CTTTCAGCTACATGATACAATATATACTTAGACGCGGTACGTTGAATAGAACATGGAGCATGTG
AAAACATACGAATTCAGAGAATCCTCACCAACCTTTGGGGGTTGCAGGACCCTTCCTTCAACTT
GAGTAAAATTTTGGGCAATTGAAATGCCAGATGCCCTCAACATGGGATCAGAATCATAATTACT
ATGTCGAAGTGCCTTGCATTTAGGGTAAACATGAATCGTCACTTACCAGTCATGTTGACAATTC
CAACCATTTCTATATGATTGTAGCAGGTTAGAATCAAGAATAGTAACTCACATCATTAAGGACT
GACATTCTTTCCTGGGGCTTCTGTCTGGATTTCTCAACAAGGGAGGACCTTTGCAGTGTTGACA
AAGCTTTGGTGTATCTTTGTAGTGGAATAAGAGAGCATAGCTGGTAATACAAGAATATTCACAA
CAGGAGTTTGAAATAATAAATAATTCTAGTAAACTTTTTTAAACATGTAGAATAGCAAAAATTA
AACAGACCTCTATTGGAAAATAAGTTGGACGCTTTGGTTTCCCCACATTTATGCAAGGAAGATT
GCCAGAATAGCGCAGCTCTATGCCTTTGTTTTTCACAAAGTAATCATAGACTGTAACTTCAACT
TCATCAACATCCCCATTGTTCCCATTCCTCTGCCTCAACGAAAACCTAGTCAAGCATGCCAATC
AGAAAGCAATCGATAATAGCAGAATGATTAGGAAAAAAACTGCAATACAAGCTCAAAACAATTG
GGTGCCTTTTCCAAAATATTAATTTAAGAATTGCTTTAGATGAATAAAATAGCAAGGAAGAATA
TGCTCTCACATCTGTTCGTTGCAATTTCTGTCACTCAAACCAATGATCTTGAATTCTGAATTCA
CAGGGGTGGTTCTTATCCTCAAGTTCTTGAGAGCACGCTTGGCCTGTATTGAGCAAGAAAACAT
CCAAGTAAGAATGTACCAATATGGTTGGATGATTACTAACACATAAACATCAATGATATTAAAT
AAAAAGCTCACCTTTTGCCAATCAATTCTGTCAGGGTGATCAACTTTCTGGTTGGCAAGAAGAA
AATCGATAACAGGACCAGGTTTAACAATCATAGTTGTCGAAACAT
Conservation Information
Conserved circRNAs NA
PMCS 0.136053208
Functional Information
Coding potential Y
Potential coding position 3557500-3559455(-)
3559465-3559462(-)
Potential amino acid sequence MCHTVNQDNLIDLPLLRCFDNYDC*(-)
MIVKPGPVIDFLLANQKVDHPDRIDWQKAKRALKNLRIRTTPVNSEFKIIGLSDRNCNEQMFSL
RQRNGNNGDVDEVEVTVYDYFVKNKGIELRYSGNLPCINVGKPKRPTYFPIELCSLIPLQRYTK
ALSTLQRSSLVEKSRQKPQERMSVLNDALRHSNYDSDPMLRASGISIAQNFTQVEGRVLQPPKL
KAGNGEDIFPRNGRWNFNNKKLIQTCSVDKWAVVNFSARCDVRNLIRDLIRNASAKGIQMAEPF
DVFEESPSLRRAPVSRRVDDMFEQIKSKLPGAPKFLLCLLPERKNCEVYGPWKRKCLAEFGIVT
QCLAPQRVNDQYLLNLLLKINAKLGGINSLLQIEASPSIPLVSKTPTIILGMDVSHGQPGQSDR
PSIAAMFRQL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017