Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d002640_circ_g.1 |
ID in PlantcircBase | zma_circ_000993 |
Alias | circ415 |
Organism | Zea mays |
Position | chr2: 17715403-17719651 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI |
Parent gene | Zm00001d002640 |
Parent gene annotation |
protein_coding |
Parent gene strand | + |
Alternative splicing | Zm00001d002640_circ_g.2 Zm00001d002640_circ_g.3 Zm00001d002640_circ_g.4 Zm00001d002640_circ_g.5 |
Support reads | 4 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | Zm00001d002640_T046:4 Zm00001d002640_T033:6 Zm00001d002640_T027:6 Zm00001d002640_T044:6 Zm00001d002640_T025:6 Zm00001d002640_T002:6 Zm00001d002640_T029:6 Zm00001d002640_T001:6 Zm00001d002640_T040:6 Zm00001d002640_T030:6 Zm00001d002640_T012:1 Zm00001d002640_T015:6 Zm00001d002640_T014:6 Zm00001d002640_T003:6 Zm00001d002640_T022:6 Zm00001d002640_T037:6 Zm00001d002640_T011:6 Zm00001d002640_T042:6 Zm00001d002640_T009:1 Zm00001d002640_T006:6 Zm00001d002640_T004:6 Zm00001d002640_T039:5 Zm00001d002640_T035:6 Zm00001d002640_T018:6 Zm00001d002640_T019:6 Zm00001d002640_T026:6 Zm00001d002640_T028:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.047564433 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |