Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d002640_circ_g.1 |
| ID in PlantcircBase | zma_circ_000993 |
| Alias | circ415 |
| Organism | Zea mays |
| Position | chr2: 17715403-17719651 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | CIRI |
| Parent gene | Zm00001d002640 |
| Parent gene annotation |
protein_coding |
| Parent gene strand | + |
| Alternative splicing | Zm00001d002640_circ_g.2 Zm00001d002640_circ_g.3 Zm00001d002640_circ_g.4 Zm00001d002640_circ_g.5 |
| Support reads | 4 |
| Tissues | seedling leaves |
| Exon boundary | No-Yes |
| Splicing signals | GT-CA |
| Number of exons covered | Zm00001d002640_T046:4 Zm00001d002640_T033:6 Zm00001d002640_T027:6 Zm00001d002640_T044:6 Zm00001d002640_T025:6 Zm00001d002640_T002:6 Zm00001d002640_T029:6 Zm00001d002640_T001:6 Zm00001d002640_T040:6 Zm00001d002640_T030:6 Zm00001d002640_T012:1 Zm00001d002640_T015:6 Zm00001d002640_T014:6 Zm00001d002640_T003:6 Zm00001d002640_T022:6 Zm00001d002640_T037:6 Zm00001d002640_T011:6 Zm00001d002640_T042:6 Zm00001d002640_T009:1 Zm00001d002640_T006:6 Zm00001d002640_T004:6 Zm00001d002640_T039:5 Zm00001d002640_T035:6 Zm00001d002640_T018:6 Zm00001d002640_T019:6 Zm00001d002640_T026:6 Zm00001d002640_T028:6 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.047564433 |
| Functional Information | |
|---|---|
| Coding potential | N |
| Potential coding position |
NA |
| Potential amino acid sequence |
NA |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chen et al., 2017b |