Detail information of Zm00001d002640_circ_g.1


General Information
CircRNA Name Zm00001d002640_circ_g.1
ID in PlantcircBase zma_circ_000993
Alias circ415
Organism Zea mays
Position chr2: 17715403-17719651  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI
Parent gene Zm00001d002640
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing Zm00001d002640_circ_g.2 Zm00001d002640_circ_g.3 Zm00001d002640_circ_g.4 Zm00001d002640_circ_g.5
Support reads 4
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d002640_T046:4
Zm00001d002640_T033:6
Zm00001d002640_T027:6
Zm00001d002640_T044:6
Zm00001d002640_T025:6
Zm00001d002640_T002:6
Zm00001d002640_T029:6
Zm00001d002640_T001:6
Zm00001d002640_T040:6
Zm00001d002640_T030:6
Zm00001d002640_T012:1
Zm00001d002640_T015:6
Zm00001d002640_T014:6
Zm00001d002640_T003:6
Zm00001d002640_T022:6
Zm00001d002640_T037:6
Zm00001d002640_T011:6
Zm00001d002640_T042:6
Zm00001d002640_T009:1
Zm00001d002640_T006:6
Zm00001d002640_T004:6
Zm00001d002640_T039:5
Zm00001d002640_T035:6
Zm00001d002640_T018:6
Zm00001d002640_T019:6
Zm00001d002640_T026:6
Zm00001d002640_T028:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAACAGGTAGGTCACTTTTCTTCACCCCTTGTTCTCCAATGGCTTCATGCTCAACACGAGAAT
GTCTTGGAGTGGACAAAACGTACTATTGAGATAGAGgttttctcaaactggggagattcttcta
ctgaaacatgcaagccttcagatacgggaatttcgattgtaccatgacgttaaagaaatagagt
tatataca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTTCTCAAACTGGGGAGATTCTTCTACTGAAACATGCAAGCCTTCAGATACGGGAATTTCGA
TTGTACCATGACGTTAAAGAAATAGAGTTATATACAAACAGTTTTATTTGTTCTGTGGATGCCT
ATGGTGGCAACAAGGTTCTAAGTTTGGTTGACAGTGTCCTACTCAAAATAAATGTTTGGTGCCG
CAGACAGCTAGGCAATTATCATGCACACTATAGTAAGGTTTGTTGTTGTCCCTATGTCCCTTGT
TTGCAACTGCATGTTTTTAAGCAGACGAATTCTTACTGTACACAATCAACTAATTTCTTGATGT
GCTTTCCTGTTTTTTTAGAAAACGTAGGAGAACTGCACATCTTTATAGATAATAGAGAGAACAA
GACTTACAAAAAAAGAGAAAAACAAAAACCCCACGGACACACACAACACACTACAACCCCCACG
GACACACACAACGCACTACAACCATCAGAGACTACCCAGGTGCCAAGAGGGTGTCAGCTAAAGC
AAGACTACCTAGCTGCTTATCTCCAGCCATCATCCAACAAGAGAGCTCATCAAGGAAGTTTCTC
AGCACTGAGCTGATAGAGGGGGATATCTTATCAAAAACCACTCTATTCCGCTGCAACCAGAGAC
ACCAGGCGCCAAGCATGATGACACTGTTGACACCCTTCTTCTTGTCTTTATGGACCTTAGAGCA
TACCTCATCCCACCAATTAGCAAAGGAGGAATCATCCGAACCCAGAATGAGATGCCCTAACCCG
AAGAGAGGCAAGATGCTGAGCCAAAACTGGCGAGCAAAGACACACGGAGTCAAGAGATGCTGAA
TTGTCTCATCTTCCTGATCACACAGAGAGCATGTTTCAGGGTGCGGCAGACCATTCTTGTGCAG
CCTATCCACAGTCCAACATTTGTCCCTCATGGCCAACCAAAGAAACATCTTGCATTTTGGAAGG
CCCCACGATTTCCATAATCTCTTCCATGGCTCAAACGTGATGGAGCCCATAAATAAGATCTTGT
AGTAGGAAGCAGGAGAGAAACAGCCAGAGGCCTCATGCCTCCATTCGTGTTTATCCTCATCATC
ATTCAGGGCTGCCTCCTCCAAAAAATCTCACAAAACTAGATATAAGCATGCTGATTAAGGAAAT
CTGTTAACAAATGCTATATATTTTACTCTGTTATGTGATCTGATTACATTGAAAATGTGTGCCT
AGCGCAGTGGTAGGTAAGCAAAAGTGCAACCTAGCTCAAATCCCTGTTCTCACAAAAAAGGCCA
CTCGTGGTATTTTCAGTGAAATACGTGGTCCACTAACGTTTGCAGCGTGATACACAGCTGCAGG
CGCGTTCTCGCCATTAGTGGCACGTGATGAGTAGTCGGGGTTCGTAGCCTTTTCTTGTCCCTGC
AGAATATAATCTTCTACCTTTCCGTCAATGCCTCAGGGGCGGTCTTACCCCTAGGGTCGAGTTA
TTTTTGATCTGATTACATTATTTCTTATCGTTGTGGTTACTCATTACCTAATTAGCTTATCTAA
CAGCTTAAACTTTTAAATTTTCTGTCATATAATTTGACAAAATAATCACCCATATTCTTTCTAT
AAGTTCATTGTGGACGAAGCATGTAAAGACAAATAGAATTCCATTGATAATAGACAGTCACCTA
ATTTCTTGTTACCATGGAATCACAAGTTTAGAACTCACAAGGCTGTTGCTGATGTAGGTAGGCC
ATCCTTTATTGTTTGCATGATGACTATATGTTGTATGAGGTTTGTCCATGCAAGTTATGAATTA
ACCAAAACTAAAAGTTTGGTAATGCGACCTGCATGATATGAATATAATAATACCATAGTAGGAC
AGTCTTGATAGTCAATTGGAAAAGAAGGGCTTGGTGTTTCTTCTTAATTAATTCCATTGGTGGT
AATTCATAGAAGGCCACAATACTACCATAAAATGTTTTTCTTGACTTGACTTCCTGCAACAGAA
TAACTACTCGATCTTTGAGGCCACACTGAACTTGGTCTTGCTATTGGTGACAAACTCCAGTGAG
GACGATTTTGAAGAAACCATGGTTAGATTTCTAATGCTTCTGCTATGGTACTCATATTTCTGAA
GTGAACACTAGAATTTTGGGGGCCAACTCCTATCCATTAGGCTTCAACCCTCTTACCATTAAGA
TGACACTATGCATTAGAAGAAACATAATTATGGTTACAATACATTCTATTCAATCAGAAATGAT
TGTGTTTCATCAAAATCAAGTAGCGTGAAAGACCTTGACTGCAAACTATATTGAAACTCCATGT
TGCCCCTACAGCTAGGAACTTTTTAGAAACTAAAATTCTCTAGGAAAGCTCTAGTTTTCTTCTT
TAGTTTGCGTTGGAACTTGGAATTCTTTACTGGAATGTATCAATACTAGAGCTTCCCTTAAATG
TTTTATTCTGAGTTTGTACTAATAATTATTTGCAGAACAGGAGAAGTTAAAAAAGTAATAAAAT
CTTCACTTGGATCAGAATGTCATGTGTAGTGTGTTCTAACATATTTCATAATCTAAATTGTTGC
TTCTCATTGTTTTTTATCAATGTTAGTATTTGATACACAAGTCTTCCTTTTTGTCCCTCAATCC
TTCTATCATATTCTTGGTATCTGTTTATTCTTGCTTTGTATTAAATAAATACTGAGTGACCTCT
TATTCACCCATCCGATGATGTATTACGGTTCATTGAATGCTGAATTTAAGAATTTTCCACCTTT
GAAGATCTGTGATCTATTTTGGGTAATTTTCAGTTCATTGAGAGCCCAGTAGGGAGTACACCAG
AACTGAAGTTGATCCATTTACTCATTGTCAGATCCATCCATGCTGCTTATAAGCAAGTGAGTTA
ACAATCCATGGGTCTAACTTTAGAAGTTCCATTTGATAACTAAATAATAAACAATGTAATGACT
TCTTGACAGTTGACACTTTAATATGCTCCATTAGGCACTAATTTCATCAAATGGCCGATCAGAT
TCAGAATTTAAGCATCCATTGACAATTCTTGCAAATGAGCTAAAGGCAGTGGCAGAGAAAGAGT
GCACTGACTTCAGTCCAATACTTAACAAGCACTATCCTGAAGCTCAAAGAGTAGCTCTAATCTT
CTTACACATGCTATATGGAAAACAATTGGTTAGTTCAACTCCTTTTACAGCTATGGTATCTTTA
TTTGGGGATCTTGCATTTACATTTATAGTTGCTATTTGCTACTAGGAACTTTTCTTGGAAAGGA
CAGATAATTCGGAGAACTCAAAAGAGATACTGGCAGCATCAAATAATTTTGAGCTCTTTATAGC
TCAGAAGCTTTACTCAGTGTATGGGGAAACTGTTGGGTCTTCATTCTCCAACTATTTAAAGCCA
TACATGGTAAGGCATCACAATGTTCTTAATGTTCATGAATCATGATAAGTACTTTAACGTTTGG
AAATGTCTTTTATCTATTAGATTGACTCGTGCAGCGCTTCCTTTGTATTGGCTTTATTTATTTA
TCAGTGGTAAAATAATATTTTCCTATTAGCTTGAGAAAAAATATTGTCCTTTTCACCTTCATGA
TGGTTTCCTATGGAATGGGACATCTTATATTGTCTCTTCCATGATTTGATATTGCACTAAGTAC
TATATAACCTTTGGTACATGAGTTACTCGGAATTCTGGAATCCAGTGCTTTCGCACTTTGACTA
CCAGCAAATTATTAATTGATCCCTTTTATTGCCTTTTGTAGTGACACACCATTTTCTGCTGTTA
AGCTGTCCTGTGTCCTGATTGATGTCCTTGTCTTAGATGGTTTGATGTTTCTGCATATATCACC
TTTCTGGGATAGTTCCTTGCCACTTTACTTGCGGTTTTGCTTCGTGGTTTTCTTTTGGGCTGCC
ATTTGTGTCTAAATACTGGATGCTTTTAGTTGCCCAAAGACCTTGCCATTTGAAAATGTTCTTA
ACATCTTATCAATTTCTGTTAATTACTAGGACAAACATCCATTAACAGCATCAAGTATTTTTAG
ATAATATACCCTTGCTTCTTTTTTTGGGGGTTTATAGCAAATCCTATTAGAATATCTTTGTGAC
ACTTGCCATTTCCAAGGACATGTTTGCATCTAAATAAATGACACCTCTTGAATCCAACAGGTAG
GTCACTTTTCTTCACCCCTTGTTCTCCAATGGCTTCATGCTCAACACGAGAATGTCTTGGAGTG
GACAAAACGTACTATTGAGATAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.047564433
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b