Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d002640_circ_g.2 |
ID in PlantcircBase | zma_circ_007081 |
Alias | zma_circ_0000845 |
Organism | Zea mays |
Position | chr2: 17715404-17718800 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d002640 |
Parent gene annotation |
protein_coding |
Parent gene strand | + |
Alternative splicing | Zm00001d002640_circ_g.1 Zm00001d002640_circ_g.3 Zm00001d002640_circ_g.4 Zm00001d002640_circ_g.5 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d002640_T030:5 Zm00001d002640_T044:5 Zm00001d002640_T015:5 Zm00001d002640_T046:3 Zm00001d002640_T003:5 Zm00001d002640_T033:5 Zm00001d002640_T019:5 Zm00001d002640_T004:5 Zm00001d002640_T040:5 Zm00001d002640_T012:1 Zm00001d002640_T025:5 Zm00001d002640_T039:5 Zm00001d002640_T027:5 Zm00001d002640_T028:5 Zm00001d002640_T042:5 Zm00001d002640_T009:1 Zm00001d002640_T001:5 Zm00001d002640_T035:5 Zm00001d002640_T022:5 Zm00001d002640_T006:5 Zm00001d002640_T011:5 Zm00001d002640_T014:5 Zm00001d002640_T018:5 Zm00001d002640_T026:5 Zm00001d002640_T037:5 Zm00001d002640_T029:5 Zm00001d002640_T002:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.042930721 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
17717470-17718797(+) |
Potential amino acid sequence |
MFIESPVGSTPELKLIHLLIVRSIHAAYKQALISSNGRSDSEFKHPLTILANELKAVAEKECTD FSPILNKHYPEAQRVALIFLHMLYGKQLELFLERTDNSENSKEILAASNNFELFIAQKLYSVYG ETVGSSFSNYLKPYMFSQTGEILLLKHASLQIREFRLYHDVKEIELYTNSFICSVDAYGGNKVL SLVDSVLLKINVWCRRQLGNYHAHYSKNNYSIFEATLNLVLLLVTNSSEDDFEETMFIESPVGS TPELKLIHLLIVRSIHAAYKQALISSNGRSDSEFKHPLTILANELKAVAEKECTDFSPILNKHY PEAQRVALIFLHMLYGKQLELFLERTDNSENSKEILAASNNFELFIAQKLYSVYGETVGSSFSN YLKPYMFSQTGEILLLKHASLQIREFRLYHDVKEIELYTNSFICSVDAYGGNKVLSLVDSVLLK INVWCRRQLGNYHAHYSKNNYSIFEATLNLVLLLVTNSSEDDFEETMFIESPVGSTPELKLIHL LIVRSIHAAYKQALISSNGRSDSEFKHPLTILANELKAVAEKECTDFSPILNKHYPEAQRVALI FLHMLYGKQLELFLERTDNSENSKEILAASNNFELFIAQKLYSVYGETVGSSFSNYLKPYMFSQ TGEILLLKHASLQIREFRLYHDVKEIELYTNSFICSVDAYGGNKVLSLVDSVLLKINVWCRRQL GNYHAHYSKNNYSIFEATLNLVLLLVTNSSEDDFEETMFIESPVGSTPELKLIHLLIVRSIHAA YKQALISSNGRSDSEFKHPLTILANELKAVAEKECTDFSPILNKHYPEAQRVALIFLHMLYGKQ LELFLERTDNSENSKEILAASNNFELFIAQKLYSVYGETVGSSFSNYLKPYM(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |