Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d002640_circ_g.2 |
| ID in PlantcircBase | zma_circ_007081 |
| Alias | zma_circ_0000845 |
| Organism | Zea mays |
| Position | chr2: 17715404-17718800 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d002640 |
| Parent gene annotation |
protein_coding |
| Parent gene strand | + |
| Alternative splicing | Zm00001d002640_circ_g.1 Zm00001d002640_circ_g.3 Zm00001d002640_circ_g.4 Zm00001d002640_circ_g.5 |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Zm00001d002640_T030:5 Zm00001d002640_T044:5 Zm00001d002640_T015:5 Zm00001d002640_T046:3 Zm00001d002640_T003:5 Zm00001d002640_T033:5 Zm00001d002640_T019:5 Zm00001d002640_T004:5 Zm00001d002640_T040:5 Zm00001d002640_T012:1 Zm00001d002640_T025:5 Zm00001d002640_T039:5 Zm00001d002640_T027:5 Zm00001d002640_T028:5 Zm00001d002640_T042:5 Zm00001d002640_T009:1 Zm00001d002640_T001:5 Zm00001d002640_T035:5 Zm00001d002640_T022:5 Zm00001d002640_T006:5 Zm00001d002640_T011:5 Zm00001d002640_T014:5 Zm00001d002640_T018:5 Zm00001d002640_T026:5 Zm00001d002640_T037:5 Zm00001d002640_T029:5 Zm00001d002640_T002:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.042930721 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
17717470-17718797(+) |
| Potential amino acid sequence |
MFIESPVGSTPELKLIHLLIVRSIHAAYKQALISSNGRSDSEFKHPLTILANELKAVAEKECTD FSPILNKHYPEAQRVALIFLHMLYGKQLELFLERTDNSENSKEILAASNNFELFIAQKLYSVYG ETVGSSFSNYLKPYMFSQTGEILLLKHASLQIREFRLYHDVKEIELYTNSFICSVDAYGGNKVL SLVDSVLLKINVWCRRQLGNYHAHYSKNNYSIFEATLNLVLLLVTNSSEDDFEETMFIESPVGS TPELKLIHLLIVRSIHAAYKQALISSNGRSDSEFKHPLTILANELKAVAEKECTDFSPILNKHY PEAQRVALIFLHMLYGKQLELFLERTDNSENSKEILAASNNFELFIAQKLYSVYGETVGSSFSN YLKPYMFSQTGEILLLKHASLQIREFRLYHDVKEIELYTNSFICSVDAYGGNKVLSLVDSVLLK INVWCRRQLGNYHAHYSKNNYSIFEATLNLVLLLVTNSSEDDFEETMFIESPVGSTPELKLIHL LIVRSIHAAYKQALISSNGRSDSEFKHPLTILANELKAVAEKECTDFSPILNKHYPEAQRVALI FLHMLYGKQLELFLERTDNSENSKEILAASNNFELFIAQKLYSVYGETVGSSFSNYLKPYMFSQ TGEILLLKHASLQIREFRLYHDVKEIELYTNSFICSVDAYGGNKVLSLVDSVLLKINVWCRRQL GNYHAHYSKNNYSIFEATLNLVLLLVTNSSEDDFEETMFIESPVGSTPELKLIHLLIVRSIHAA YKQALISSNGRSDSEFKHPLTILANELKAVAEKECTDFSPILNKHYPEAQRVALIFLHMLYGKQ LELFLERTDNSENSKEILAASNNFELFIAQKLYSVYGETVGSSFSNYLKPYM(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |