Detail information of Zm00001d002640_circ_g.2


General Information
CircRNA Name Zm00001d002640_circ_g.2
ID in PlantcircBase zma_circ_007081
Alias zma_circ_0000845
Organism Zea mays
Position chr2: 17715404-17718800  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d002640
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing Zm00001d002640_circ_g.1 Zm00001d002640_circ_g.3 Zm00001d002640_circ_g.4 Zm00001d002640_circ_g.5
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d002640_T030:5
Zm00001d002640_T044:5
Zm00001d002640_T015:5
Zm00001d002640_T046:3
Zm00001d002640_T003:5
Zm00001d002640_T033:5
Zm00001d002640_T019:5
Zm00001d002640_T004:5
Zm00001d002640_T040:5
Zm00001d002640_T012:1
Zm00001d002640_T025:5
Zm00001d002640_T039:5
Zm00001d002640_T027:5
Zm00001d002640_T028:5
Zm00001d002640_T042:5
Zm00001d002640_T009:1
Zm00001d002640_T001:5
Zm00001d002640_T035:5
Zm00001d002640_T022:5
Zm00001d002640_T006:5
Zm00001d002640_T011:5
Zm00001d002640_T014:5
Zm00001d002640_T018:5
Zm00001d002640_T026:5
Zm00001d002640_T037:5
Zm00001d002640_T029:5
Zm00001d002640_T002:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCATCAAATAATTTTGAGCTCTTTATAGCTCAGAAGCTTTACTCAGTGTATGGGGAAACTGTT
GGGTCTTCATTCTCCAACTATTTAAAGCCATACATGttttctcaaactggggagattcttctac
tgaaacatgcaagccttcagatacgggaatttcgattgtaccatgacgttaaagaaatagagtt
atatacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTTCTCAAACTGGGGAGATTCTTCTACTGAAACATGCAAGCCTTCAGATACGGGAATTTCGAT
TGTACCATGACGTTAAAGAAATAGAGTTATATACAAACAGTTTTATTTGTTCTGTGGATGCCTA
TGGTGGCAACAAGGTTCTAAGTTTGGTTGACAGTGTCCTACTCAAAATAAATGTTTGGTGCCGC
AGACAGCTAGGCAATTATCATGCACACTATAGTAAGGTTTGTTGTTGTCCCTATGTCCCTTGTT
TGCAACTGCATGTTTTTAAGCAGACGAATTCTTACTGTACACAATCAACTAATTTCTTGATGTG
CTTTCCTGTTTTTTTAGAAAACGTAGGAGAACTGCACATCTTTATAGATAATAGAGAGAACAAG
ACTTACAAAAAAAGAGAAAAACAAAAACCCCACGGACACACACAACACACTACAACCCCCACGG
ACACACACAACGCACTACAACCATCAGAGACTACCCAGGTGCCAAGAGGGTGTCAGCTAAAGCA
AGACTACCTAGCTGCTTATCTCCAGCCATCATCCAACAAGAGAGCTCATCAAGGAAGTTTCTCA
GCACTGAGCTGATAGAGGGGGATATCTTATCAAAAACCACTCTATTCCGCTGCAACCAGAGACA
CCAGGCGCCAAGCATGATGACACTGTTGACACCCTTCTTCTTGTCTTTATGGACCTTAGAGCAT
ACCTCATCCCACCAATTAGCAAAGGAGGAATCATCCGAACCCAGAATGAGATGCCCTAACCCGA
AGAGAGGCAAGATGCTGAGCCAAAACTGGCGAGCAAAGACACACGGAGTCAAGAGATGCTGAAT
TGTCTCATCTTCCTGATCACACAGAGAGCATGTTTCAGGGTGCGGCAGACCATTCTTGTGCAGC
CTATCCACAGTCCAACATTTGTCCCTCATGGCCAACCAAAGAAACATCTTGCATTTTGGAAGGC
CCCACGATTTCCATAATCTCTTCCATGGCTCAAACGTGATGGAGCCCATAAATAAGATCTTGTA
GTAGGAAGCAGGAGAGAAACAGCCAGAGGCCTCATGCCTCCATTCGTGTTTATCCTCATCATCA
TTCAGGGCTGCCTCCTCCAAAAAATCTCACAAAACTAGATATAAGCATGCTGATTAAGGAAATC
TGTTAACAAATGCTATATATTTTACTCTGTTATGTGATCTGATTACATTGAAAATGTGTGCCTA
GCGCAGTGGTAGGTAAGCAAAAGTGCAACCTAGCTCAAATCCCTGTTCTCACAAAAAAGGCCAC
TCGTGGTATTTTCAGTGAAATACGTGGTCCACTAACGTTTGCAGCGTGATACACAGCTGCAGGC
GCGTTCTCGCCATTAGTGGCACGTGATGAGTAGTCGGGGTTCGTAGCCTTTTCTTGTCCCTGCA
GAATATAATCTTCTACCTTTCCGTCAATGCCTCAGGGGCGGTCTTACCCCTAGGGTCGAGTTAT
TTTTGATCTGATTACATTATTTCTTATCGTTGTGGTTACTCATTACCTAATTAGCTTATCTAAC
AGCTTAAACTTTTAAATTTTCTGTCATATAATTTGACAAAATAATCACCCATATTCTTTCTATA
AGTTCATTGTGGACGAAGCATGTAAAGACAAATAGAATTCCATTGATAATAGACAGTCACCTAA
TTTCTTGTTACCATGGAATCACAAGTTTAGAACTCACAAGGCTGTTGCTGATGTAGGTAGGCCA
TCCTTTATTGTTTGCATGATGACTATATGTTGTATGAGGTTTGTCCATGCAAGTTATGAATTAA
CCAAAACTAAAAGTTTGGTAATGCGACCTGCATGATATGAATATAATAATACCATAGTAGGACA
GTCTTGATAGTCAATTGGAAAAGAAGGGCTTGGTGTTTCTTCTTAATTAATTCCATTGGTGGTA
ATTCATAGAAGGCCACAATACTACCATAAAATGTTTTTCTTGACTTGACTTCCTGCAACAGAAT
AACTACTCGATCTTTGAGGCCACACTGAACTTGGTCTTGCTATTGGTGACAAACTCCAGTGAGG
ACGATTTTGAAGAAACCATGGTTAGATTTCTAATGCTTCTGCTATGGTACTCATATTTCTGAAG
TGAACACTAGAATTTTGGGGGCCAACTCCTATCCATTAGGCTTCAACCCTCTTACCATTAAGAT
GACACTATGCATTAGAAGAAACATAATTATGGTTACAATACATTCTATTCAATCAGAAATGATT
GTGTTTCATCAAAATCAAGTAGCGTGAAAGACCTTGACTGCAAACTATATTGAAACTCCATGTT
GCCCCTACAGCTAGGAACTTTTTAGAAACTAAAATTCTCTAGGAAAGCTCTAGTTTTCTTCTTT
AGTTTGCGTTGGAACTTGGAATTCTTTACTGGAATGTATCAATACTAGAGCTTCCCTTAAATGT
TTTATTCTGAGTTTGTACTAATAATTATTTGCAGAACAGGAGAAGTTAAAAAAGTAATAAAATC
TTCACTTGGATCAGAATGTCATGTGTAGTGTGTTCTAACATATTTCATAATCTAAATTGTTGCT
TCTCATTGTTTTTTATCAATGTTAGTATTTGATACACAAGTCTTCCTTTTTGTCCCTCAATCCT
TCTATCATATTCTTGGTATCTGTTTATTCTTGCTTTGTATTAAATAAATACTGAGTGACCTCTT
ATTCACCCATCCGATGATGTATTACGGTTCATTGAATGCTGAATTTAAGAATTTTCCACCTTTG
AAGATCTGTGATCTATTTTGGGTAATTTTCAGTTCATTGAGAGCCCAGTAGGGAGTACACCAGA
ACTGAAGTTGATCCATTTACTCATTGTCAGATCCATCCATGCTGCTTATAAGCAAGTGAGTTAA
CAATCCATGGGTCTAACTTTAGAAGTTCCATTTGATAACTAAATAATAAACAATGTAATGACTT
CTTGACAGTTGACACTTTAATATGCTCCATTAGGCACTAATTTCATCAAATGGCCGATCAGATT
CAGAATTTAAGCATCCATTGACAATTCTTGCAAATGAGCTAAAGGCAGTGGCAGAGAAAGAGTG
CACTGACTTCAGTCCAATACTTAACAAGCACTATCCTGAAGCTCAAAGAGTAGCTCTAATCTTC
TTACACATGCTATATGGAAAACAATTGGTTAGTTCAACTCCTTTTACAGCTATGGTATCTTTAT
TTGGGGATCTTGCATTTACATTTATAGTTGCTATTTGCTACTAGGAACTTTTCTTGGAAAGGAC
AGATAATTCGGAGAACTCAAAAGAGATACTGGCAGCATCAAATAATTTTGAGCTCTTTATAGCT
CAGAAGCTTTACTCAGTGTATGGGGAAACTGTTGGGTCTTCATTCTCCAACTATTTAAAGCCAT
ACATG
Conservation Information
Conserved circRNAs NA
PMCS 0.042930721
Functional Information
Coding potential Y
Potential coding position 17717470-17718797(+)
Potential amino acid sequence MFIESPVGSTPELKLIHLLIVRSIHAAYKQALISSNGRSDSEFKHPLTILANELKAVAEKECTD
FSPILNKHYPEAQRVALIFLHMLYGKQLELFLERTDNSENSKEILAASNNFELFIAQKLYSVYG
ETVGSSFSNYLKPYMFSQTGEILLLKHASLQIREFRLYHDVKEIELYTNSFICSVDAYGGNKVL
SLVDSVLLKINVWCRRQLGNYHAHYSKNNYSIFEATLNLVLLLVTNSSEDDFEETMFIESPVGS
TPELKLIHLLIVRSIHAAYKQALISSNGRSDSEFKHPLTILANELKAVAEKECTDFSPILNKHY
PEAQRVALIFLHMLYGKQLELFLERTDNSENSKEILAASNNFELFIAQKLYSVYGETVGSSFSN
YLKPYMFSQTGEILLLKHASLQIREFRLYHDVKEIELYTNSFICSVDAYGGNKVLSLVDSVLLK
INVWCRRQLGNYHAHYSKNNYSIFEATLNLVLLLVTNSSEDDFEETMFIESPVGSTPELKLIHL
LIVRSIHAAYKQALISSNGRSDSEFKHPLTILANELKAVAEKECTDFSPILNKHYPEAQRVALI
FLHMLYGKQLELFLERTDNSENSKEILAASNNFELFIAQKLYSVYGETVGSSFSNYLKPYMFSQ
TGEILLLKHASLQIREFRLYHDVKEIELYTNSFICSVDAYGGNKVLSLVDSVLLKINVWCRRQL
GNYHAHYSKNNYSIFEATLNLVLLLVTNSSEDDFEETMFIESPVGSTPELKLIHLLIVRSIHAA
YKQALISSNGRSDSEFKHPLTILANELKAVAEKECTDFSPILNKHYPEAQRVALIFLHMLYGKQ
LELFLERTDNSENSKEILAASNNFELFIAQKLYSVYGETVGSSFSNYLKPYM(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b