Plant Circular RNA Database

Detail information of Os02g0773450_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0773450_circ_g.1
					
						ID in PlantcircBase
						osa_circ_016726
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 32650204-32654040  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0773450						
					
						Parent gene annotation
						
							Hypothetical protein. (Os02t0773450-00)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0773400_circ_g.1 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0773400-01:5
Os02t0773450-00:5
Os02t0773400-01:5

General Information
CircRNA Name	Os02g0773450_circ_g.1
ID in PlantcircBase	osa_circ_016726
Alias	NA
Organism	Oryza sativa
Position	chr2: 32650204-32654040 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0773450
Parent gene annotation	Hypothetical protein. (Os02t0773450-00)
Parent gene strand	-
Alternative splicing	Os02g0773400_circ_g.1
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0773400-01:5 Os02t0773450-00:5 Os02t0773400-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CATATTCGAGTCAGCGTGGGCTAACTTTGTGATTAACCTTCTAATGTTTGTTTTGGCGGGACAT
GTTGTTGGTTCATGTTGGTACCTATTTGGATTGCAGggttaagaaatgtctgaccaggagagag
atgatattcctatgctactaagaaatgttgagctaccaacgtttcctcctagaagtacatcaat
gtgcatac

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GGTTAAGAAATGTCTGACCAGGAGAGAGATGATATTCCTATGCTACTAAGAAATGTTGAGCTAC
CAACGTTTCCTCCTAGAAGTACATCAATGTGCATACCAGTTAGGGATGATGAATACGAAGAAGA
CACATTTGTACCCCATACTGGTCCTCTGTTTGTTCAGCCACCAACACAAACTGCAGCAGCGGGC
ATTCCATTTACAAATACACCAGATATGCCTCCTCGACCTCCACAAGGAAAACAAGTCAACAAGC
CACATGCGATAATGCCAGAAGAAATTGGAGGAAACAGGTGGTCTTATAGTGGGAATGTTCCAAA
GAATGAACATTTGATGATGTCTGGACCTTTGGGACAATGTGACGATCCTGATTGTGTCAACTGC
CCTCCTGCTTGTAAAAACAAAAGGCATTTTCACAGAGGATCAAGTACATTGGACAGTAAGGTGG
TCTTACTTCCCTCTTTTTGTAGGAATGCACAAAACATTAAAACTATATGATTTTATCTGAACCT
GATAGTTGTGGCTGGATTGCGCAACATTTTTCTAGTAAAATAGCATAGTATTGATACATACTTC
ACAATCATCATAAGTGATCTGGATTCGAGAAGCCTAGTACTTCTGAATTATAAAGTAGAGAACA
CAAGTCTAAAAGAAACATAAAAGATAAAAGGCAAAAAAAAAAAAACAGAGTATAGAATGCACCT
CTACATAGATGAGAGGTAATATTAGTTGATATTTATCTTCTTCTTATATAAAAATCTCCTAGTA
AGCAATCAACATTTGGCTACAGATAACTCAATTTTAAGCATCAAAATTTCTATTTCAATCTTCA
ATGGAAAATAACAGCCAATATTGCTGGAGGTAGCGCTGTAGCGGAAGTACCCCGCTATTGTTAT
TGCGGCTGCAATTGTGGCCATTGTGAATGCTATTTAGTACCTTGGTTCTTAGTTTTTTTTTTGT
CTAGTTAGATTTCTTCAACATAATGATCAAAGCACTTCTTAAGAGCGCTTAAAGTTACTGACTG
TGGTATTGTTGTATTGAATAATCTAATCTGTTTTCTTTTGCTCTCTTGAAGTTCCATAATTTTC
TTTGTGAGCATGGTGGTGGATGGAAGAAGGAAATTGAGCGTTTCCTTTCACGCATTCCAGTTAT
GAACCCACATGCAAAAGTTGTTCAGCAATGGAATCAGTTCTTTGTGATATCATGCCTGGTTGCC
ATATTCATTGACCCACTATTTTTCTTCCTATTATCAGTTCAAAAGGTAACTAGTTCACTTGAAG
ATGCTAGTTCATATCCATCTGTCAAAAGCCTACAACTTTCTTGTACACTTCATTTGTTGTTGCA
CCTTGTTTGTGAGTTTGTGAGCTAATCTTGTGTAATTTTTCTTACTCCTGTTGCAGCATTCTAT
TCTCCTATCGGTTAACTGTTCTAAGTGTTGATATCTTGTGTAATGGATTGAAAGGGTCAAATAA
GCCTAAAAGGGGAGGGGGGAAGGAATAGGCGATTAAAACTTTTAAGTAGATGCAGAAGCAGTGC
TTTTCGGAAATTCCGAAAATCTCAGATACTCCGAAGATCAAAGCTGACCTGCACTTACTTTTGT
TCCCTTTTTTTTTATGCAGGATAACAAGTGCATTGTGTTGAACTGGCATTTTGCTACAGCACTT
GCAGTTGTGAGAAGCGTGACTGATGCTATTTATTTTCTACACATGCTTCTTCAGGTCAGTACAT
CATTGCTTTTGCTATTCTATAGAAGGTTCTATAATTCATGTTCCATGATAGGGTATGGTTCCAC
ATTTTATAAAATTCTTTCATAAATAACATGGTCACTAAGGCATCAGATGGAAGGCAGTTTGATT
ATATTTTGGTTCTTTGGTATGCATATTAGGACAAGTATATTTGTTGAGTGATCAGTAGTTTTCT
TCTAAAAATGCCAAATTAGATACTGGTTTTTTGTGAGTATAACTTGCACTTTTTATCTGTTGAC
AATATGTGAGAAAAGGCTCAGCCGCTCAGGTTCAATATTCTTGTGTCCTGGTATCATGTTTTAG
TAACTAACAGTAATGCATTGTTTGATCTTCAGCGGATGATTTATCATATCTCCATGATCAAATA
GTTGTGATATCTTTTTACCCTTTGTTTGTTAATTGTAATGGTTTGTCATGCTTTGACTCCATTC
TGGTATCATGTTTTAGTTTGATTTATCATATCTTGTATTTTATTTTATTTTGCATCTATTTGTT
CCTGTCCAGTTTTAACCCCAAGAAAACATATTATCAACTTTTGACCGTTTTATTTTTTGCATTT
CTCTTTCAGTTCAGACTGGCTTATGTAGCTCCAGAATCGCGAGTAGTGGGAGCTGGAGATTTAG
TAGACGAGCCAAAGAAAATTGCTGTCCGTTATCTTCGTGGATATTTTTTACTCGACTTCTTCGT
TGTGCTTCCACTCCCTCAGGTAACTTGTTTTATCCTTCTGAGTTGATGTGGCTAAATTTTGACA
TTAAGCTTCATTTTTCTTCTTTATCCCTGATGGATGACTTATTATCTAGGCTGAAGTTTTCCTT
TATCATTCTATTTATATTTTTATATTGCTTTGGTACTCCTCTTCAAGTCGGTAGCAGAAGGCAA
ACTTGTTCTTAGGGTTATGATAATTATTTTTTAGGGTAGGTCAAACAAATAAAAGAGTTAGCTA
CTGGGAACGCACTATACATCCTGGAGAGTATGTTGGAGACCTGGCACAAGCAGCATAGGAGTTA
GGAGGTCCCAGCTATCCATCCAGCTGTTGAAAATTGCTTTTCTTGTTTGCTTGGCTTATTACTT
TGCATCTGCCATGGCTTTGTGGACCGGTGGCCACAACTGAATGCTTGCGATTGGCAAGTGCTAG
TGATCCATGTTCATCTTTTTCATGCACACAGCAAATTCATTGCCCTATGTAGCTAGTGTTATGG
ACCTATCATGAACAGATCAAGAGCATTTCTTTCAGTTCTCTTCACGTGCACAATAGACCACATT
ATCCTTTTAAGCTATAAACTTGTGATCTCCACTATTGATGTACTTTAAAATACATAAGCTTCAT
CTAAGGAGTATTGGTTCAAGTCCCCGTTGAAAATATATGCTATTGAACCTTTCAGGTTTATTTT
GGTAGTTTCTTGTTGGTCTCAGAGTATTTGCCAATGTATTTAAGCCAACTAGAAATTGACAAGA
AGTCAAAAAGAAGTTGCTGTTTAGCATTGAAAATACTATGGATCTTGGGCATGATAATGACTAA
TTGATTATTCCATACTTGTGACCTTAGCAGATTGAGGATGAGTCTCATGAAATTGATCATGCAG
AGGAACACCTTAGCTAGGCTGGCAATTCTTTGTTACTTTCTGTTCTGTTTGCCATCAATATTGT
CAGTATGAGCATCATTTGATCTGATTGCACTGATGCCCTTTATCTATTTATTGCCCCAGTTGCT
TATGTAAATCAGAATTGCATTTTTTTCTAACCCTATTAATAAAGGATATTCATCGAAACAATTT
ACACCTTTTTATATCTTATTGGCTAATACTTTTTTTTTGTCTTCTGTTCCTTGATAAAGGTGAT
GATATTGCTGGTCATCCCTAAATATGTTGGGTTATCAACTGCAAACTATGCTAAGAATTTACTG
CGTATCACTGTTCTTCTTCAGTATGTTCCCCGCATCATCAGATTTGTACCATTGCTTGGTGGTC
AGTCTGACTCATCTGCCAATGGATTCATATTCGAGTCAGCGTGGGCTAACTTTGTGATTAACCT
TCTAATGTTTGTTTTGGCGGGACATGTTGTTGGTTCATGTTGGTACCTATTTGGATTGCAG
						
					

			
		

Sequences
Splice junction sequence	CATATTCGAGTCAGCGTGGGCTAACTTTGTGATTAACCTTCTAATGTTTGTTTTGGCGGGACAT GTTGTTGGTTCATGTTGGTACCTATTTGGATTGCAGggttaagaaatgtctgaccaggagagag atgatattcctatgctactaagaaatgttgagctaccaacgtttcctcctagaagtacatcaat gtgcatac
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GGTTAAGAAATGTCTGACCAGGAGAGAGATGATATTCCTATGCTACTAAGAAATGTTGAGCTAC CAACGTTTCCTCCTAGAAGTACATCAATGTGCATACCAGTTAGGGATGATGAATACGAAGAAGA CACATTTGTACCCCATACTGGTCCTCTGTTTGTTCAGCCACCAACACAAACTGCAGCAGCGGGC ATTCCATTTACAAATACACCAGATATGCCTCCTCGACCTCCACAAGGAAAACAAGTCAACAAGC CACATGCGATAATGCCAGAAGAAATTGGAGGAAACAGGTGGTCTTATAGTGGGAATGTTCCAAA GAATGAACATTTGATGATGTCTGGACCTTTGGGACAATGTGACGATCCTGATTGTGTCAACTGC CCTCCTGCTTGTAAAAACAAAAGGCATTTTCACAGAGGATCAAGTACATTGGACAGTAAGGTGG TCTTACTTCCCTCTTTTTGTAGGAATGCACAAAACATTAAAACTATATGATTTTATCTGAACCT GATAGTTGTGGCTGGATTGCGCAACATTTTTCTAGTAAAATAGCATAGTATTGATACATACTTC ACAATCATCATAAGTGATCTGGATTCGAGAAGCCTAGTACTTCTGAATTATAAAGTAGAGAACA CAAGTCTAAAAGAAACATAAAAGATAAAAGGCAAAAAAAAAAAAACAGAGTATAGAATGCACCT CTACATAGATGAGAGGTAATATTAGTTGATATTTATCTTCTTCTTATATAAAAATCTCCTAGTA AGCAATCAACATTTGGCTACAGATAACTCAATTTTAAGCATCAAAATTTCTATTTCAATCTTCA ATGGAAAATAACAGCCAATATTGCTGGAGGTAGCGCTGTAGCGGAAGTACCCCGCTATTGTTAT TGCGGCTGCAATTGTGGCCATTGTGAATGCTATTTAGTACCTTGGTTCTTAGTTTTTTTTTTGT CTAGTTAGATTTCTTCAACATAATGATCAAAGCACTTCTTAAGAGCGCTTAAAGTTACTGACTG TGGTATTGTTGTATTGAATAATCTAATCTGTTTTCTTTTGCTCTCTTGAAGTTCCATAATTTTC TTTGTGAGCATGGTGGTGGATGGAAGAAGGAAATTGAGCGTTTCCTTTCACGCATTCCAGTTAT GAACCCACATGCAAAAGTTGTTCAGCAATGGAATCAGTTCTTTGTGATATCATGCCTGGTTGCC ATATTCATTGACCCACTATTTTTCTTCCTATTATCAGTTCAAAAGGTAACTAGTTCACTTGAAG ATGCTAGTTCATATCCATCTGTCAAAAGCCTACAACTTTCTTGTACACTTCATTTGTTGTTGCA CCTTGTTTGTGAGTTTGTGAGCTAATCTTGTGTAATTTTTCTTACTCCTGTTGCAGCATTCTAT TCTCCTATCGGTTAACTGTTCTAAGTGTTGATATCTTGTGTAATGGATTGAAAGGGTCAAATAA GCCTAAAAGGGGAGGGGGGAAGGAATAGGCGATTAAAACTTTTAAGTAGATGCAGAAGCAGTGC TTTTCGGAAATTCCGAAAATCTCAGATACTCCGAAGATCAAAGCTGACCTGCACTTACTTTTGT TCCCTTTTTTTTTATGCAGGATAACAAGTGCATTGTGTTGAACTGGCATTTTGCTACAGCACTT GCAGTTGTGAGAAGCGTGACTGATGCTATTTATTTTCTACACATGCTTCTTCAGGTCAGTACAT CATTGCTTTTGCTATTCTATAGAAGGTTCTATAATTCATGTTCCATGATAGGGTATGGTTCCAC ATTTTATAAAATTCTTTCATAAATAACATGGTCACTAAGGCATCAGATGGAAGGCAGTTTGATT ATATTTTGGTTCTTTGGTATGCATATTAGGACAAGTATATTTGTTGAGTGATCAGTAGTTTTCT TCTAAAAATGCCAAATTAGATACTGGTTTTTTGTGAGTATAACTTGCACTTTTTATCTGTTGAC AATATGTGAGAAAAGGCTCAGCCGCTCAGGTTCAATATTCTTGTGTCCTGGTATCATGTTTTAG TAACTAACAGTAATGCATTGTTTGATCTTCAGCGGATGATTTATCATATCTCCATGATCAAATA GTTGTGATATCTTTTTACCCTTTGTTTGTTAATTGTAATGGTTTGTCATGCTTTGACTCCATTC TGGTATCATGTTTTAGTTTGATTTATCATATCTTGTATTTTATTTTATTTTGCATCTATTTGTT CCTGTCCAGTTTTAACCCCAAGAAAACATATTATCAACTTTTGACCGTTTTATTTTTTGCATTT CTCTTTCAGTTCAGACTGGCTTATGTAGCTCCAGAATCGCGAGTAGTGGGAGCTGGAGATTTAG TAGACGAGCCAAAGAAAATTGCTGTCCGTTATCTTCGTGGATATTTTTTACTCGACTTCTTCGT TGTGCTTCCACTCCCTCAGGTAACTTGTTTTATCCTTCTGAGTTGATGTGGCTAAATTTTGACA TTAAGCTTCATTTTTCTTCTTTATCCCTGATGGATGACTTATTATCTAGGCTGAAGTTTTCCTT TATCATTCTATTTATATTTTTATATTGCTTTGGTACTCCTCTTCAAGTCGGTAGCAGAAGGCAA ACTTGTTCTTAGGGTTATGATAATTATTTTTTAGGGTAGGTCAAACAAATAAAAGAGTTAGCTA CTGGGAACGCACTATACATCCTGGAGAGTATGTTGGAGACCTGGCACAAGCAGCATAGGAGTTA GGAGGTCCCAGCTATCCATCCAGCTGTTGAAAATTGCTTTTCTTGTTTGCTTGGCTTATTACTT TGCATCTGCCATGGCTTTGTGGACCGGTGGCCACAACTGAATGCTTGCGATTGGCAAGTGCTAG TGATCCATGTTCATCTTTTTCATGCACACAGCAAATTCATTGCCCTATGTAGCTAGTGTTATGG ACCTATCATGAACAGATCAAGAGCATTTCTTTCAGTTCTCTTCACGTGCACAATAGACCACATT ATCCTTTTAAGCTATAAACTTGTGATCTCCACTATTGATGTACTTTAAAATACATAAGCTTCAT CTAAGGAGTATTGGTTCAAGTCCCCGTTGAAAATATATGCTATTGAACCTTTCAGGTTTATTTT GGTAGTTTCTTGTTGGTCTCAGAGTATTTGCCAATGTATTTAAGCCAACTAGAAATTGACAAGA AGTCAAAAAGAAGTTGCTGTTTAGCATTGAAAATACTATGGATCTTGGGCATGATAATGACTAA TTGATTATTCCATACTTGTGACCTTAGCAGATTGAGGATGAGTCTCATGAAATTGATCATGCAG AGGAACACCTTAGCTAGGCTGGCAATTCTTTGTTACTTTCTGTTCTGTTTGCCATCAATATTGT CAGTATGAGCATCATTTGATCTGATTGCACTGATGCCCTTTATCTATTTATTGCCCCAGTTGCT TATGTAAATCAGAATTGCATTTTTTTCTAACCCTATTAATAAAGGATATTCATCGAAACAATTT ACACCTTTTTATATCTTATTGGCTAATACTTTTTTTTTGTCTTCTGTTCCTTGATAAAGGTGAT GATATTGCTGGTCATCCCTAAATATGTTGGGTTATCAACTGCAAACTATGCTAAGAATTTACTG CGTATCACTGTTCTTCTTCAGTATGTTCCCCGCATCATCAGATTTGTACCATTGCTTGGTGGTC AGTCTGACTCATCTGCCAATGGATTCATATTCGAGTCAGCGTGGGCTAACTTTGTGATTAACCT TCTAATGTTTGTTTTGGCGGGACATGTTGTTGGTTCATGTTGGTACCTATTTGGATTGCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.111693888

Conservation Information
Conserved circRNAs	NA
PMCS	0.111693888

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							32650214-32650206(+)
32654004-32650249(+)
						
						Potential amino acid sequence
						
							MSDQERDDIPMLLRNVELPTFPPRSTSMCIPVRDDEYEEDTFVPHTGPLFVQPPTQTAAAGIPF
TNTPDMPPRPPQGKQVNKPHAIMPEEIGGNRWSYSGNVPKNEHLMMSGPLGQCDDPDCVNCPPA
CKNKRHFHRGSSTLDSKFHNFLCEHGGGWKKEIERFLSRIPVMNPHAKVVQQWNQFFVISCLVA
IFIDPLFFFLLSVQKDNKCIVLNWHFATALAVVRSVTDAIYFLHMLLQFRLAYVAPESRVVGAG
DLVDEPKKIAVRYLRGYFLLDFFVVLPLPQVMILLVIPKYVGLSTANYAKNLLRITVLLQYVPR
IIRFVPLLGGQSDSSANGFIFESAWANFVINLLMFVLAGHVVGSCWYLFGLQG*(+)
MLLVHVGTYLDCRVKKCLTRREMIFLCY*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	32650214-32650206(+) 32654004-32650249(+)
Potential amino acid sequence	MSDQERDDIPMLLRNVELPTFPPRSTSMCIPVRDDEYEEDTFVPHTGPLFVQPPTQTAAAGIPF TNTPDMPPRPPQGKQVNKPHAIMPEEIGGNRWSYSGNVPKNEHLMMSGPLGQCDDPDCVNCPPA CKNKRHFHRGSSTLDSKFHNFLCEHGGGWKKEIERFLSRIPVMNPHAKVVQQWNQFFVISCLVA IFIDPLFFFLLSVQKDNKCIVLNWHFATALAVVRSVTDAIYFLHMLLQFRLAYVAPESRVVGAG DLVDEPKKIAVRYLRGYFLLDFFVVLPLPQVMILLVIPKYVGLSTANYAKNLLRITVLLQYVPR IIRFVPLLGGQSDSSANGFIFESAWANFVINLLMFVLAGHVVGSCWYLFGLQG(+) MLLVHVGTYLDCRVKKCLTRREMIFLCY(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0773450_circ_g.1

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