Plant Circular RNA Database

Detail information of Os02g0773400_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0773400_circ_g.1
					
						ID in PlantcircBase
						osa_circ_016725
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 32649722-32652654  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0773400						
					
						Parent gene annotation
						
							Cyclic nucleotide-binding domain containing protein. (Os02t07734
00-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0773450_circ_g.1 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0773400-01:5

General Information
CircRNA Name	Os02g0773400_circ_g.1
ID in PlantcircBase	osa_circ_016725
Alias	NA
Organism	Oryza sativa
Position	chr2: 32649722-32652654 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0773400
Parent gene annotation	Cyclic nucleotide-binding domain containing protein. (Os02t07734 00-01)
Parent gene strand	+
Alternative splicing	Os02g0773450_circ_g.1
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0773400-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGGAGCTGGAGATTTAGTAGACGAGCCAAAGAAAATTGCTGTCCGTTATCTTCGTGGATATTTT
TTACTCGACTTCTTCGTTGTGCTTCCACTCCCTCAGgttctctgttctttgggggactcctaca
gatgtaattggttctgtaagttggggacctaatcaggtgaacacttgattgtgataggcttgtc
accattgt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 931
Transcript exons: 32649722-32649785,32650204-32650647,32651279-32651464,32
651823-32651921,32652517-32652654
GTTCTCTGTTCTTTGGGGGACTCCTACAGATGTAATTGGTTCTGTAAGTTGGGGACCTAATCAG
GGTTAAGAAATGTCTGACCAGGAGAGAGATGATATTCCTATGCTACTAAGAAATGTTGAGCTAC
CAACGTTTCCTCCTAGAAGTACATCAATGTGCATACCAGTTAGGGATGATGAATACGAAGAAGA
CACATTTGTACCCCATACTGGTCCTCTGTTTGTTCAGCCACCAACACAAACTGCAGCAGCGGGC
ATTCCATTTACAAATACACCAGATATGCCTCCTCGACCTCCACAAGGAAAACAAGTCAACAAGC
CACATGCGATAATGCCAGAAGAAATTGGAGGAAACAGGTGGTCTTATAGTGGGAATGTTCCAAA
GAATGAACATTTGATGATGTCTGGACCTTTGGGACAATGTGACGATCCTGATTGTGTCAACTGC
CCTCCTGCTTGTAAAAACAAAAGGCATTTTCACAGAGGATCAAGTACATTGGACAGTAAGTTCC
ATAATTTTCTTTGTGAGCATGGTGGTGGATGGAAGAAGGAAATTGAGCGTTTCCTTTCACGCAT
TCCAGTTATGAACCCACATGCAAAAGTTGTTCAGCAATGGAATCAGTTCTTTGTGATATCATGC
CTGGTTGCCATATTCATTGACCCACTATTTTTCTTCCTATTATCAGTTCAAAAGGATAACAAGT
GCATTGTGTTGAACTGGCATTTTGCTACAGCACTTGCAGTTGTGAGAAGCGTGACTGATGCTAT
TTATTTTCTACACATGCTTCTTCAGTTCAGACTGGCTTATGTAGCTCCAGAATCGCGAGTAGTG
GGAGCTGGAGATTTAGTAGACGAGCCAAAGAAAATTGCTGTCCGTTATCTTCGTGGATATTTTT
TACTCGACTTCTTCGTTGTGCTTCCACTCCCTCAG
						
					

						Genomic sequence
						
							GTTCTCTGTTCTTTGGGGGACTCCTACAGATGTAATTGGTTCTGTAAGTTGGGGACCTAATCAG
GTGAACACTTGATTGTGATAGGCTTGTCACCATTGTTAGATATGCAGCAGGTTACTGACACAAC
AGGGGCTGATTTTGTTTGGCCAATCTACATGTGGATTCTCTACCGCAGAGTGTATTTTCATGCT
GTATCATTCTAGTGGCCATTATAGGTTAATAACTTTATATTTCTATCTAAGGTGGTTGTTTCAA
ACACTGGCATTCAGTAATGTGTTTTTACATTCCTGAAAATGTTCTGAAAATTTTCGTTATTGTT
ATGCTGACATTGTGCTACAAATATAATTCCAACATGAGTATTGATATTGATTGGAGTCGTTACT
CTCTGAAGATAGATAATGTTCTTTTATACAAAAGTATGCAAACTTTCTTGCTTGTGTCATTGAA
CTTGATTTTCTATTACAATGGATGTTGATTTCAGGGTTAAGAAATGTCTGACCAGGAGAGAGAT
GATATTCCTATGCTACTAAGAAATGTTGAGCTACCAACGTTTCCTCCTAGAAGTACATCAATGT
GCATACCAGTTAGGGATGATGAATACGAAGAAGACACATTTGTACCCCATACTGGTCCTCTGTT
TGTTCAGCCACCAACACAAACTGCAGCAGCGGGCATTCCATTTACAAATACACCAGATATGCCT
CCTCGACCTCCACAAGGAAAACAAGTCAACAAGCCACATGCGATAATGCCAGAAGAAATTGGAG
GAAACAGGTGGTCTTATAGTGGGAATGTTCCAAAGAATGAACATTTGATGATGTCTGGACCTTT
GGGACAATGTGACGATCCTGATTGTGTCAACTGCCCTCCTGCTTGTAAAAACAAAAGGCATTTT
CACAGAGGATCAAGTACATTGGACAGTAAGGTGGTCTTACTTCCCTCTTTTTGTAGGAATGCAC
AAAACATTAAAACTATATGATTTTATCTGAACCTGATAGTTGTGGCTGGATTGCGCAACATTTT
TCTAGTAAAATAGCATAGTATTGATACATACTTCACAATCATCATAAGTGATCTGGATTCGAGA
AGCCTAGTACTTCTGAATTATAAAGTAGAGAACACAAGTCTAAAAGAAACATAAAAGATAAAAG
GCAAAAAAAAAAAAACAGAGTATAGAATGCACCTCTACATAGATGAGAGGTAATATTAGTTGAT
ATTTATCTTCTTCTTATATAAAAATCTCCTAGTAAGCAATCAACATTTGGCTACAGATAACTCA
ATTTTAAGCATCAAAATTTCTATTTCAATCTTCAATGGAAAATAACAGCCAATATTGCTGGAGG
TAGCGCTGTAGCGGAAGTACCCCGCTATTGTTATTGCGGCTGCAATTGTGGCCATTGTGAATGC
TATTTAGTACCTTGGTTCTTAGTTTTTTTTTTGTCTAGTTAGATTTCTTCAACATAATGATCAA
AGCACTTCTTAAGAGCGCTTAAAGTTACTGACTGTGGTATTGTTGTATTGAATAATCTAATCTG
TTTTCTTTTGCTCTCTTGAAGTTCCATAATTTTCTTTGTGAGCATGGTGGTGGATGGAAGAAGG
AAATTGAGCGTTTCCTTTCACGCATTCCAGTTATGAACCCACATGCAAAAGTTGTTCAGCAATG
GAATCAGTTCTTTGTGATATCATGCCTGGTTGCCATATTCATTGACCCACTATTTTTCTTCCTA
TTATCAGTTCAAAAGGTAACTAGTTCACTTGAAGATGCTAGTTCATATCCATCTGTCAAAAGCC
TACAACTTTCTTGTACACTTCATTTGTTGTTGCACCTTGTTTGTGAGTTTGTGAGCTAATCTTG
TGTAATTTTTCTTACTCCTGTTGCAGCATTCTATTCTCCTATCGGTTAACTGTTCTAAGTGTTG
ATATCTTGTGTAATGGATTGAAAGGGTCAAATAAGCCTAAAAGGGGAGGGGGGAAGGAATAGGC
GATTAAAACTTTTAAGTAGATGCAGAAGCAGTGCTTTTCGGAAATTCCGAAAATCTCAGATACT
CCGAAGATCAAAGCTGACCTGCACTTACTTTTGTTCCCTTTTTTTTTATGCAGGATAACAAGTG
CATTGTGTTGAACTGGCATTTTGCTACAGCACTTGCAGTTGTGAGAAGCGTGACTGATGCTATT
TATTTTCTACACATGCTTCTTCAGGTCAGTACATCATTGCTTTTGCTATTCTATAGAAGGTTCT
ATAATTCATGTTCCATGATAGGGTATGGTTCCACATTTTATAAAATTCTTTCATAAATAACATG
GTCACTAAGGCATCAGATGGAAGGCAGTTTGATTATATTTTGGTTCTTTGGTATGCATATTAGG
ACAAGTATATTTGTTGAGTGATCAGTAGTTTTCTTCTAAAAATGCCAAATTAGATACTGGTTTT
TTGTGAGTATAACTTGCACTTTTTATCTGTTGACAATATGTGAGAAAAGGCTCAGCCGCTCAGG
TTCAATATTCTTGTGTCCTGGTATCATGTTTTAGTAACTAACAGTAATGCATTGTTTGATCTTC
AGCGGATGATTTATCATATCTCCATGATCAAATAGTTGTGATATCTTTTTACCCTTTGTTTGTT
AATTGTAATGGTTTGTCATGCTTTGACTCCATTCTGGTATCATGTTTTAGTTTGATTTATCATA
TCTTGTATTTTATTTTATTTTGCATCTATTTGTTCCTGTCCAGTTTTAACCCCAAGAAAACATA
TTATCAACTTTTGACCGTTTTATTTTTTGCATTTCTCTTTCAGTTCAGACTGGCTTATGTAGCT
CCAGAATCGCGAGTAGTGGGAGCTGGAGATTTAGTAGACGAGCCAAAGAAAATTGCTGTCCGTT
ATCTTCGTGGATATTTTTTACTCGACTTCTTCGTTGTGCTTCCACTCCCTCAG
						
					

			
		

Sequences
Splice junction sequence	GGGAGCTGGAGATTTAGTAGACGAGCCAAAGAAAATTGCTGTCCGTTATCTTCGTGGATATTTT TTACTCGACTTCTTCGTTGTGCTTCCACTCCCTCAGgttctctgttctttgggggactcctaca gatgtaattggttctgtaagttggggacctaatcaggtgaacacttgattgtgataggcttgtc accattgt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 931 Transcript exons: 32649722-32649785,32650204-32650647,32651279-32651464,32 651823-32651921,32652517-32652654 GTTCTCTGTTCTTTGGGGGACTCCTACAGATGTAATTGGTTCTGTAAGTTGGGGACCTAATCAG GGTTAAGAAATGTCTGACCAGGAGAGAGATGATATTCCTATGCTACTAAGAAATGTTGAGCTAC CAACGTTTCCTCCTAGAAGTACATCAATGTGCATACCAGTTAGGGATGATGAATACGAAGAAGA CACATTTGTACCCCATACTGGTCCTCTGTTTGTTCAGCCACCAACACAAACTGCAGCAGCGGGC ATTCCATTTACAAATACACCAGATATGCCTCCTCGACCTCCACAAGGAAAACAAGTCAACAAGC CACATGCGATAATGCCAGAAGAAATTGGAGGAAACAGGTGGTCTTATAGTGGGAATGTTCCAAA GAATGAACATTTGATGATGTCTGGACCTTTGGGACAATGTGACGATCCTGATTGTGTCAACTGC CCTCCTGCTTGTAAAAACAAAAGGCATTTTCACAGAGGATCAAGTACATTGGACAGTAAGTTCC ATAATTTTCTTTGTGAGCATGGTGGTGGATGGAAGAAGGAAATTGAGCGTTTCCTTTCACGCAT TCCAGTTATGAACCCACATGCAAAAGTTGTTCAGCAATGGAATCAGTTCTTTGTGATATCATGC CTGGTTGCCATATTCATTGACCCACTATTTTTCTTCCTATTATCAGTTCAAAAGGATAACAAGT GCATTGTGTTGAACTGGCATTTTGCTACAGCACTTGCAGTTGTGAGAAGCGTGACTGATGCTAT TTATTTTCTACACATGCTTCTTCAGTTCAGACTGGCTTATGTAGCTCCAGAATCGCGAGTAGTG GGAGCTGGAGATTTAGTAGACGAGCCAAAGAAAATTGCTGTCCGTTATCTTCGTGGATATTTTT TACTCGACTTCTTCGTTGTGCTTCCACTCCCTCAG
Genomic sequence	GTTCTCTGTTCTTTGGGGGACTCCTACAGATGTAATTGGTTCTGTAAGTTGGGGACCTAATCAG GTGAACACTTGATTGTGATAGGCTTGTCACCATTGTTAGATATGCAGCAGGTTACTGACACAAC AGGGGCTGATTTTGTTTGGCCAATCTACATGTGGATTCTCTACCGCAGAGTGTATTTTCATGCT GTATCATTCTAGTGGCCATTATAGGTTAATAACTTTATATTTCTATCTAAGGTGGTTGTTTCAA ACACTGGCATTCAGTAATGTGTTTTTACATTCCTGAAAATGTTCTGAAAATTTTCGTTATTGTT ATGCTGACATTGTGCTACAAATATAATTCCAACATGAGTATTGATATTGATTGGAGTCGTTACT CTCTGAAGATAGATAATGTTCTTTTATACAAAAGTATGCAAACTTTCTTGCTTGTGTCATTGAA CTTGATTTTCTATTACAATGGATGTTGATTTCAGGGTTAAGAAATGTCTGACCAGGAGAGAGAT GATATTCCTATGCTACTAAGAAATGTTGAGCTACCAACGTTTCCTCCTAGAAGTACATCAATGT GCATACCAGTTAGGGATGATGAATACGAAGAAGACACATTTGTACCCCATACTGGTCCTCTGTT TGTTCAGCCACCAACACAAACTGCAGCAGCGGGCATTCCATTTACAAATACACCAGATATGCCT CCTCGACCTCCACAAGGAAAACAAGTCAACAAGCCACATGCGATAATGCCAGAAGAAATTGGAG GAAACAGGTGGTCTTATAGTGGGAATGTTCCAAAGAATGAACATTTGATGATGTCTGGACCTTT GGGACAATGTGACGATCCTGATTGTGTCAACTGCCCTCCTGCTTGTAAAAACAAAAGGCATTTT CACAGAGGATCAAGTACATTGGACAGTAAGGTGGTCTTACTTCCCTCTTTTTGTAGGAATGCAC AAAACATTAAAACTATATGATTTTATCTGAACCTGATAGTTGTGGCTGGATTGCGCAACATTTT TCTAGTAAAATAGCATAGTATTGATACATACTTCACAATCATCATAAGTGATCTGGATTCGAGA AGCCTAGTACTTCTGAATTATAAAGTAGAGAACACAAGTCTAAAAGAAACATAAAAGATAAAAG GCAAAAAAAAAAAAACAGAGTATAGAATGCACCTCTACATAGATGAGAGGTAATATTAGTTGAT ATTTATCTTCTTCTTATATAAAAATCTCCTAGTAAGCAATCAACATTTGGCTACAGATAACTCA ATTTTAAGCATCAAAATTTCTATTTCAATCTTCAATGGAAAATAACAGCCAATATTGCTGGAGG TAGCGCTGTAGCGGAAGTACCCCGCTATTGTTATTGCGGCTGCAATTGTGGCCATTGTGAATGC TATTTAGTACCTTGGTTCTTAGTTTTTTTTTTGTCTAGTTAGATTTCTTCAACATAATGATCAA AGCACTTCTTAAGAGCGCTTAAAGTTACTGACTGTGGTATTGTTGTATTGAATAATCTAATCTG TTTTCTTTTGCTCTCTTGAAGTTCCATAATTTTCTTTGTGAGCATGGTGGTGGATGGAAGAAGG AAATTGAGCGTTTCCTTTCACGCATTCCAGTTATGAACCCACATGCAAAAGTTGTTCAGCAATG GAATCAGTTCTTTGTGATATCATGCCTGGTTGCCATATTCATTGACCCACTATTTTTCTTCCTA TTATCAGTTCAAAAGGTAACTAGTTCACTTGAAGATGCTAGTTCATATCCATCTGTCAAAAGCC TACAACTTTCTTGTACACTTCATTTGTTGTTGCACCTTGTTTGTGAGTTTGTGAGCTAATCTTG TGTAATTTTTCTTACTCCTGTTGCAGCATTCTATTCTCCTATCGGTTAACTGTTCTAAGTGTTG ATATCTTGTGTAATGGATTGAAAGGGTCAAATAAGCCTAAAAGGGGAGGGGGGAAGGAATAGGC GATTAAAACTTTTAAGTAGATGCAGAAGCAGTGCTTTTCGGAAATTCCGAAAATCTCAGATACT CCGAAGATCAAAGCTGACCTGCACTTACTTTTGTTCCCTTTTTTTTTATGCAGGATAACAAGTG CATTGTGTTGAACTGGCATTTTGCTACAGCACTTGCAGTTGTGAGAAGCGTGACTGATGCTATT TATTTTCTACACATGCTTCTTCAGGTCAGTACATCATTGCTTTTGCTATTCTATAGAAGGTTCT ATAATTCATGTTCCATGATAGGGTATGGTTCCACATTTTATAAAATTCTTTCATAAATAACATG GTCACTAAGGCATCAGATGGAAGGCAGTTTGATTATATTTTGGTTCTTTGGTATGCATATTAGG ACAAGTATATTTGTTGAGTGATCAGTAGTTTTCTTCTAAAAATGCCAAATTAGATACTGGTTTT TTGTGAGTATAACTTGCACTTTTTATCTGTTGACAATATGTGAGAAAAGGCTCAGCCGCTCAGG TTCAATATTCTTGTGTCCTGGTATCATGTTTTAGTAACTAACAGTAATGCATTGTTTGATCTTC AGCGGATGATTTATCATATCTCCATGATCAAATAGTTGTGATATCTTTTTACCCTTTGTTTGTT AATTGTAATGGTTTGTCATGCTTTGACTCCATTCTGGTATCATGTTTTAGTTTGATTTATCATA TCTTGTATTTTATTTTATTTTGCATCTATTTGTTCCTGTCCAGTTTTAACCCCAAGAAAACATA TTATCAACTTTTGACCGTTTTATTTTTTGCATTTCTCTTTCAGTTCAGACTGGCTTATGTAGCT CCAGAATCGCGAGTAGTGGGAGCTGGAGATTTAGTAGACGAGCCAAAGAAAATTGCTGTCCGTT ATCTTCGTGGATATTTTTTACTCGACTTCTTCGTTGTGCTTCCACTCCCTCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.223599773

Conservation Information
Conserved circRNAs	NA
PMCS	0.223599773

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							32650214-32649778(+)
						
						Potential amino acid sequence
						
							MSDQERDDIPMLLRNVELPTFPPRSTSMCIPVRDDEYEEDTFVPHTGPLFVQPPTQTAAAGIPF
TNTPDMPPRPPQGKQVNKPHAIMPEEIGGNRWSYSGNVPKNEHLMMSGPLGQCDDPDCVNCPPA
CKNKRHFHRGSSTLDSKFHNFLCEHGGGWKKEIERFLSRIPVMNPHAKVVQQWNQFFVISCLVA
IFIDPLFFFLLSVQKDNKCIVLNWHFATALAVVRSVTDAIYFLHMLLQFRLAYVAPESRVVGAG
DLVDEPKKIAVRYLRGYFLLDFFVVLPLPQVLCSLGDSYRCNWFCKLGT*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	32650214-32649778(+)
Potential amino acid sequence	MSDQERDDIPMLLRNVELPTFPPRSTSMCIPVRDDEYEEDTFVPHTGPLFVQPPTQTAAAGIPF TNTPDMPPRPPQGKQVNKPHAIMPEEIGGNRWSYSGNVPKNEHLMMSGPLGQCDDPDCVNCPPA CKNKRHFHRGSSTLDSKFHNFLCEHGGGWKKEIERFLSRIPVMNPHAKVVQQWNQFFVISCLVA IFIDPLFFFLLSVQKDNKCIVLNWHFATALAVVRSVTDAIYFLHMLLQFRLAYVAPESRVVGAG DLVDEPKKIAVRYLRGYFLLDFFVVLPLPQVLCSLGDSYRCNWFCKLGT*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0773400_circ_g.1

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