Detail information of Os12g0178100_circ_ag.1


General Information
CircRNA Name Os12g0178100_circ_ag.1
ID in PlantcircBase osa_circ_010676
Alias Os_ciR2667
Organism Oryza sativa
Position chr12: 3956381-3960842  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os12g0178100_circ_ag.2 Os12g0178100_circ_ag.3 Os12g0178100_circ_g.1 Os12g0178100_circ_ag.2 Os12g0178100_circ_ag.3 Os12g0178100_circ_ag.4 Os12g0178100_circ_ag.5 Os12g0178200_circ_g.1
Support reads 5/9
Tissues root/seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGCTCTATAGTAGCAAGAACAAACAAGGTATTATCTTGTTTATCACTCGCCAAAATGCAGTTC
ATCGGCAGCTGACGCCAGCTATTCAAGTGAAATACCctttggaggatcaaactttgctccgaga
ttgctcagtttggcatgagcttcagcatagtcttcaaaaaatgcatcctgatctgcggcgtact
tttcagca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGGAGGATCAAACTTTGCTCCGAGATTGCTCAGTTTGGCATGAGCTTCAGCATAGTCTTCA
AAAAATGCATCCTGATCTGCGGCGTACTTTTCAGCATAGATCTTCAGGCATGGCAAGCAAGCAA
AACTTTTTAGTTTAGAGCGTCACTTTTGATTTGCAGTTCTTTACAACAAGAGCTGATGAGAATC
TTCACTAACCTTGAATGATGAGTCCTCAAAGAGCACAGCATCAGTAGGCAGAACTAGAAGGTCC
TCATCTCGGCGTTCTTTGATGTCCTTAAATTTTATGCAGACTAACATAAGTTTTGTAAATTGTA
ACTGCTATCATGTTTGGTATTGATAAAGAAAATAGTGCATCCTACCTTGAAGTAGCTATTATCA
AACTTCAGCCACTGTGATGTCCAAGATTGCCCTCCAGGTGCACCAGGTCCGTTTTTCTTTGCGA
GTCAAAAGAAATTAATCAATTAGCCAAACAAGAAATTCAACATTCAGAACATTCATCAGCAAGA
ACTTCATGAAGGAGTGCATGCTAGATATAGTTAATACTGCAAGTCTACTACCCACAAGAACATA
TTTGAAAGCATATAAGCACTGTAGTAGGAAAGTTTGTAGCATTGATGCTAATATAGGTCATCCG
CGATTAGAGATGAAGCATAATATGGTCAACTAACACAACAGCGCAGAAGCATCTCTTTATTTTC
TTCGGTGAAGTAGTAATAAATCATATAAAGATCTTCAATACAGAGCTTTTACAAGGAAGAGATA
TATGCAAGATCAATAAGCATTGCCAGTGATGACAACTTAATTATCCCATTGGCTAATCTAAAAA
ATACGTAGTAACTAAATAACATGCAATACTCCAAAATGAATCATGGACAAGGCGTTACTAAAAT
CAGAACAATAACCTACTACTGATATAACTATATAAGTTACATACAGTGTATTTAGTTTCTGGTT
TGCCCCATCCACTGCGCTCTGGTCTAGATCGTCCAAGTGTATGAGCTCCTGACAATGCAACAAT
TTCCTACAGATCACAAAACAGATGTAACTAGCAAATCCCCAGAAAAAGTTGTTTGGAATATTGA
ATGAAGCAATCTGCAAGTACCTTGTCACTCAGGCCCATTCTATAGAATACTTCTCGTAGATGTT
CCGCAGGTGAAGGAGGGCCAGCAGCTGAAAGGGTGGAAATGTAAAATATAGGGAACAAAATTGC
AACAGAAAGCACATGCATATGAAAGAGGATTAGATCATCATCAGCACTAGATTTCAAATATCAA
AGTACACTATAAGACACAGCAGGAAATATATCAATGTCATGTGAATACAAAAACAAACAGCTGA
AAGTGCTGCAATTCTTGGGGAGCTATATTTTATCAATCTCACAGGTTAAGTGCAATCATAGCAC
TGATTTTCATTCTGCACAGCATGTGCAGCTTACAATTTTTCTGTTATATTGCAATTGGGGTAAT
CTTTCTTACACATTTGCATGTCCAAAATGTTATTACACCAGATTACAGAGCTCACGGTGGCAAT
ATTTCATAAGAAACTTGTTTTTTCATGCTTTTAGCCAGTTAGCATCAATTTTAGTACTTCATGA
AGTAAAACCCATAGATACATGGATAAGATACCACGCCTAAACCTTCTAAATAAGTTGAATCTGA
GAGGCATTACCACGAATGTAATAGCCTATTATAGGCAGACCATTGTCCATTTAAGAAAATAAAT
TTATCATTAAAGAAGAAATAAAACAGGACTATTACAGTAGGTTAGCAAGAAAACTATCAATTTA
TATTAATGTCTTCTATTGTTGACACTACATCTAAATAATTTGATTTTGATGTAAATAGATTGCA
GACAAATAAAGATGGATATGCGCGATTTCCTATGTCAATCAGGTATCTCAATTGCATGATAACC
CATAAATTGAGATTAAACAAGAGGACCAATAGAGTATATTTGTAACTTCATTTCTGAGTGTTGG
AACACATATCAGTTCTGCTCTGAAAGTTATCAATATTCTAGGTTTAATGAATAAGGAGAAAGTA
GAATTTGCGAAATGAAGCTGCAAGAAGATGGCCAATTGTAATAGCAACTTGGGATCAGTGTGAC
ATGACACTAAAGGTACAGCATTATATTTTAGTTTCCAGATGATAAATCACGGTAACGAACAAAT
TTGGGCTACAGAACCCAAAAGCTACTGACCAGGAAGTCTCCCCTCTGGCGGGCATTGTTCAGGG
GCAGCAACATCAACCCTTCCATAGATCATGGGGATCTTGGGGCCACCGGCTTCCTGAGTTTTAA
AACAGACCAAAGCAATCATATCAGCATTAAATAATAAATACTGTTTGAATGATAGTTCATAGTT
ATCATTAGACTAAAGTGACAAAAGGACCTCAATGGCTGTAGCACTGGCGAGCTGAAACAGATCT
GCATAAGTGACACCTGCATGCTTGTCTTTGATGGGCTGGATCAGCTTCAAAGCATTCACAAGAC
CTGAAGTAGAGGGTTATTGTAAGGATAACCATGAATCACGAACAATAGATAATGACAGAACAGA
AGCACTACCTGCATTAGCCGCATGTTTTAACTCAATTTCGAATCTCAAGCTACCATTGGCACCA
CCACACTTTGGCCATTCAGTAATGTTCTTGTCATAAGTACCAGCATCATGCCACCCTAACCGAA
CCTGCAACCAAGGTTAACCCAGCAGACAAGTCATAAATATGCAATGTTCGATCAAGCAGATGCA
GAACCATGAACTGCACAAATCTAGCGAATATTGTGCATAGAACGTGTTACAGTCTTCTTGCACA
CAGGTGAACTAGAGCAGTTGCATCTTCTCGAAGTAAAAGTTACTGTTTTAAATAGCATAATCGA
CCAGTTAACTAAACACACAAAGAACAATCTTTTGTAGAGATGCGAAATCCATGGATATAGCTAG
ACAATCTAAAATCCCATTATACTCTTCGAACCATACAAACCCGCAATCTTTGCACAAGAACACT
AAAGCAGCAAAGCATATATTAGCATACCAGGATGGGATGGCAGGAGGTGGACTTGAGCAGCTGC
TTGACGTCCTCCCGCGCGCCCCGCAGCTCAGCCGCCGCGTCCCCCGCCGCCGCCGCCGACGAGC
TCGCCGGACGCCTCCCGAGCTCCTTCACGGGGGAGAAAATGAACAAAAATCATCAAGAAAGGGA
CATCGCTAAATCAAGAACCGGTCCGCCGCCGGCGCGGGTAATGAACAGCGAAAGGGAGGGGGGG
AGGCGTCGTAGGTGGTACTAGTACCTGAAGAGAGGGGAGGGGAGAGGCGGCGGAGAGGCCGCGG
CGGAGGAGGCGGTGGACGACGGCCATGTCGGCGGCGGCGGAGGTGGGGAGAGGAGGGTTTTGGT
GGCGTTTTGGGAGTGGTTCGCTGCTCCGTGGTCAGGGGAGGAATCTACCAATAGCAAAATTTCA
CTCTCTTTTTGTGTGTGTGTGTGTGTGTGTTTTTTTTTTGGAATTCTTTAACTAGTTCGTTTGA
TTGGGGGGGAGAAGAGTGGAAGACACATACTCCCTCCATCCCAAAATTTTCGACACCGTTGACT
TTTTTAAAAATATTTAACCATTAATCTTATTTAAAAAAATTAAGTAATTATTAATTCTTTTCCC
GTCATTTGATTTATTGTTAAATATATTTTTATGTATACATATAGTTTTACACATTTCACAGAAG
TTTTTGAATAAGACGAATGGTCAAACATATTTAAAAAAGTCAACGGCGTCAAGGAGGGAGTATT
TAGGTTGAGTTATTTAGGCCTCTTCTTTTTCTTAAGTTCAAACTTCAATTTTCTCGTTTTTATT
AGCACGTTTTTCAAACGGTTAAATGTTACTTTCTTTTAAAAAAATAATTATATATATGGAAGTT
GTTTAAAAAACAAATAAATCTATTTTTTCAAGTTTATAATAGTTAATATTTAATTTTTTTAAGA
TAATTAATCATATACTAATGAGCTTTCTCATTTCGCGTACAATACAAATCTTCCTCCTCCATGA
GAAACCGAAGGAACCCGTGCTAGCATGTTGGGTGTCACAACTCACAACTCGCAACTATAGTTTG
ATCTTAATGCTAAATAAGTATGTTAGAAATAATGTAGGAACTCACAATTCACATTACTATCTTC
GTTATATAAAAACCTAGTATTATCTAACTGAGGTTGTGATGCATCTAATTGTTGACCTGAACAA
ATTTGGTTGCTCTTTTTCGAGCTATCTTTATAATATAGTACAATAGATAAGATGGCAAGCAGTA
ACACAGCTCAATACACAGCACCAGCATCACATTTACAATAAGTTAAATTTCTGGATGGGTAGTA
AAACCAGAATATGCTCTATAGTAGCAAGAACAAACAAGGTATTATCTTGTTTATCACTCGCCAA
AATGCAGTTCATCGGCAGCTGACGCCAGCTATTCAAGTGAAATACC
Conservation Information
Conserved circRNAs NA
PMCS 0.496968523
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017