Detail information of Niben101Scf04675g01003_circ_g.2


General Information
CircRNA Name Niben101Scf04675g01003_circ_g.2
ID in PlantcircBase nbe_circ_007281
Alias NA
Organism Nicotiana benthamiana
Position chrNiben101Scf04675: 133819-138702  JBrowse»
Reference genome Niben.genome.v1.0.1
Type   ue-circRNA
Identification method DCC
Parent gene Niben101Scf04675g01003
Parent gene annotation NA
Parent gene strand +
Alternative splicing Niben101Scf04675g01003_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GC-TT
Number of exons covered Niben101Scf04675g01003.1:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACTGTTGATCCATTTGCTTCAGTTCCACTAAATACTTTTGGCAACTCTGATCCTTTTGGTGCA
TTTGTTTCTCAACCTGTATCAATGCCCGATGAAAATcagattcatttatcccaaatcaacttaa
atatcaattaggcagatccaaccatggatttcatgaaggtcttcgatcaaacggtccgcgaaat
gtaagctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGATTCATTTATCCCAAATCAACTTAAATATCAATTAGGCAGATCCAACCATGGATTTCATGA
AGGTCTTCGATCAAACGGTCCGCGAAATGTAAGCTTTTTCTTTTTAATTAGATTTGCATTCTCT
TTTTAGTTAATTTTTTGAAATAATATTAGTTTTAGTTTGATTTGTTTACGGGTTAAATTTTTAC
TGGCATTTTTGCAGAAAGAGGGAGGTGAATTTGAAAGTGTTGAAGGTCCCTGAAATCGAGCAAA
AGGTAAAATAATTAAATACATTCAGTTTTTTTTTTCATTGCGATTATTCAGTACCTGTTTCTTC
ATGTTGTAGATAATGTCTGACTAATTAAGTTAAAGAACTACCTGGTTCAAGTTAAAGACATTTG
AGTGATTAGTAAGTTCTAATTGAATTGAGTGCTCTGGATTTTGTGAGGTATTGTGTTGCACTTC
GTTTCCTAGTTGTTGAGTAGAAAATTAGCGAACCGTACTGTATTGAAATAATTAAATACATTCA
GTTTTTTGTTCATAGTGATTATTCAGTACCTGTTTCTTGATGTTGTAGATTAATGTCTGATTAA
TTAAGTTAAACTACCTGGTTCTAGTTAAGGACATTTGAGTGATTATTTAATTATAATTGTATTG
AGTGCTCTGGATTTTCTAAGGTAAAATTGTGTTGCATTTCGTTTCCTAGTTGAGTAGAAAATTA
GCTAACCATACTGTATTGAACCTTGGAAGGAATCTAAGAACTTGTAGATAACCCCCTATGGGAA
TGAACCATGGGAATGAATCTATAAGGTACTCATTTTATTTGGCAAAATCTTCCATTCTCTAATC
CATGTCCTAATTGCTGGTCAGAATTCCTTCCGCTCCACCTAGATACTCCATGTGTCCCAATTTA
TGTGATACTCATTCCTTTTTAGTTTGTCAAGAGAATGACACCTTTCTTTATTCCGAAACAATTT
GATTTTGAACTTCCGATTTCACTAATGAGATGATTTATAGCCACCGAAATGTCTATGGCTTTTA
GACAAAAAGTTTAAAAAGTATTTCTTTATTTCTTGAATTCTATGCTAAGGCAAACAACCACACA
TAAATTGGGACGAAGGGAGTAATTGATCAAATGTTGGGACTTGGGCCGGTTTAAATGAAGTCTA
GTAAGCTAATGTCTTTATGAAAGCATCATTCATGAAAAATTGAGACTCATGAAGGTATATAATG
GTTTTTCAGATATCAAACTTGGCTGTGCACTTTGGCATTTACATAGCTTAGGATTTTTATTTGT
TTAGGCATAGGCTAGTGGTTATTCTTTTTTGAAGGTTAGGCTTATTATATAGAAAGAGGTGCAT
AGAAAGTAGATTGGATATTAGGACTATCTTTTATTCTTTTACTTCTATCAGTTTGAATGATGAT
GTGATATATTTCAACATGGAACTAGGTATTGGATGCTACGGATGATGAACCTTGGGGCCCTCAT
GGGACTGCTTTGGCTGAGATAGCACAGGCTACAAAAAAATTGTACGGTTTAGCCATTATATTTT
CCGGATTCAGTTGAATAATTCTTTGTTTCTCTTTTCATCAGCTGGCTGATCTATTGAGGTATTT
TGCAGCTCCGAGAGTCAGATGATCATGAATGTGCTCTGGACAAGATTAACTGAAACGGGAAAGA
ACTGGCGTTTTGTTTATAAGGTAGGATTTTTTTTAATGGCATCAACTTGCGTAGCTAAGAGAGT
TAAAAACTTCAGTACTAATAAAATATAGTAAGACCAAAAGGAGAGCAAAGACTTAAGCTTCTGA
TCGTCAACTTTGTTGTCTCTTTTGAGTTTCTATTCTATAACTTTTCAAATAATCTCTTATTTAA
ATAGTTATGGATTACTGTTTGTACCAGTCGTTGGCTGTTATAGAGTACTTGGTGGCACATGGAT
CTGAACGTGCAGTTGATGACATCATAGAACATACGTATCAGATCTCTGTACGTATTCTCATGTT
ATTTCATCAAATTTCTTATTTTCTTTTGCCAGTACCAAAACATACAGCTTTTTCCTTGTCTGAC
CGAACCAAGTATGGCCCTTTACCTTCTCCCTTTATGTCTTATATATCTATTGTTTCAATTATTC
TACTCAAGTCTCTCACGAGTTTCGAGTATGTTGAGCCAAGTGGGAAGGATCTGGGCATTAATGT
GAGGAAAAAGGCGGAAAATATTGTGGCACTATTAAATAACAAAGAGAAGATACAAGAGGTTAGG
AATAAAGCTGCTGCAAACCGTGACAAGTAAGTATATTATTTAAGGTCTGACTTTACTTTTGATT
ACTCAAGAGTCCCTAGAAACTTCAGTTGCATAATTGCATGCTGATGATATTAGATGTCACCTTT
TAGGTACGTTGGAGTATCATCTTCTGGAGTGTCATATAAGTCAAACTCTGCCTCTTTTAGTAGC
AGCAGCGGCAGCTTTCGGAGTAATGAGCGATATGGAGGTTTTGGAAGTAAAAGCGATGGCGATT
CATTTAAGGATAGTTACAGTGAGAAGGATCGATATGATGAAGAAAAGATTGATCAAAGTACTTA
TAAGTCAAAGATGGGATCTTCTCGTTATGGCAGGTTTGTGCACCCTGCTTCTTTCTTTATTTAT
TTTTCTTAGATAAATATAGCTAAATGCCTTTTATTCTGCACTGCCTTTATCCCATTTAACTGTT
TAATCTTGGGGTTTTTGCATGAAAAGGACTCATCTTTGGGGTTTGTGGCCTAGGGTAGTTCATG
CTTTCACATAGCTGCTGAACCTGTTATCTGGTGATGCATAACCATTCAAGTGCATACTCTTTCA
AAGCTTATTGCAAAAGAATGGAACATATATTAGCAGCAGACATGGCAAAAACTAAATTGTCGTT
GGTTCATGAGACTAAGGGTCTAGTCATTATCTTCCCAGATGTTCATGTTGTTGCTAACACAAAC
CGGTGATGCATAACCATTCATCTTTTTTCAATAGGTTGCTCCATGGTCTATGCCATTCTTGCTT
TTGGCTCTCAAATTGTTTTTGGCCTGTCCCTCATACTTAAAGCTGTTATATAGAGTTTGTTTGA
ACTTTAGCTTCCCTCTTTATTTAAATCATAGATTAAATTTTGCACTGGCATTGACTTTAGTTCA
AATAAGCTGTTTCTCTGGGAATGGCAGTTTTCTTCCATGTTTTAATTCGTGTCTCTTTTTGGTT
AACATTAATGAAATCTGCAGCAAAGTTCAGGATACTGTTTCTGCTAGTGGATCAAAGATGATGA
AGAAGATAGGTGAGCCTAAAAAGTCTTCTTCACAGAGCTCGACTGTACCATCAAGCAATTACGA
GGAAGATTTTGACGATTTTGATCCTCGGGGGGCTTCGAGTGCTAGTAAGTATTTGTTGAACTTT
CAGAGAGGACAATCTGCAGTCTTCTATTTTGTGTTTTATAGGAGGCCCTCATTATGCTCAGTTC
CCTATAACATGTTTTGTTTATGAAGGTTCTGTCACTTTACATCTTTGATGGTTTGGGCAAAAGA
ACTTCTATAACTTTTTTGCATGTGCACGGGTGGGTATTCAACAAATTAGAGAACTCTATTAAAG
GTAGCTGCATAAGTTGTGTGTTACATGAAAACCTATGTTCTTTTTGAGTCTGGTAAAAATTTAT
AGGTGCCCTGGTTGAACCAGAAAATGCTAGAGGTCAAATAAAGTTTTATTATCTGGCTGTCCTA
TTGTGTTGGAGACAATCGCTAAGGAACTAGGGCATATTAACAATGGACGAAGAAAACAACAAAT
TATTGATGGGGACTTGATTTCCTCTCCATGTACTTCTGAAATACATTCTTAATACATCATTAAA
TGAATATCTTACCTTATTAAAAACAAAACAAAAGCAAATTATTACTCAATATTTAAGACATCTA
TTTTAAATAAATTTATTGTGTAGAAGTGCACCAGACCTTTTAGATGTGGCAAAGTTTAGATTGT
CATAAATCTCTTGGTGGAGGGTGGGATAGGGGTAATAACAAAATTGAAATGAGAGCACATATGC
GTGTTGGAAATGAAACCATTGAGGTCCTAATCTCATGTAGGCTGCAACTTACTGCTTGATTTGC
TATTTCTCGTTTCGAAATTTACTATTACTTACTTTGGCTGTCAAACAGAGCCTTCTACAGGAAA
TTCTAACCAAGTAGATCTATTTGGGCAAAATTTGATGGGTGACCTCTTGGATGCACCGACGCCT
GCTCCAGCTGCTACGTCTACTGTGAACACTGATCCATCAGAGGTTGATTTATTTGCTGATGCCA
CTTTTGTATCAGCAAAACCACAGATTTCGGGTCTAGCTTCCCAAACTCCAGTAGGAATCCCTCC
ATCACCCTGTTTAAACTCTTGCTCTTAGTATTGGTTGGTTCGTTACAAAGTAGCCATTTGTCTT
TTCTGCAGAAGGGCGTGGATCTATTTGCCTCCCAGCCTGCCCCTTCAGCTGCAGCTTCAACGAT
AGATTTTTTCGCTGCACCAGATCCTGTTGTACAGTCTAATAACGGATTTTCAAAACCACAGATT
ACGGGTGTAACTTCCCAAACTCCAGTATGAATCCCTCCATCACCCTGTTAAAATCTTGCTCTTA
ATATTGCTTAGTTTGTTACAAAGTAACCACTTGTTTTTTCTGCAGAAGGGTGTGGATCTGTTTG
CCTCCCAGCCTGCCCCTTCAGCTGCAGCTTCAACAATAGATTTTTTCGCTGCAGCGGATCCTGT
TGTACAATCTGATAACAGATCTTCAAAACTAGACCAGATGAACATTAACACTGTTGATCCATTT
GCTTCAGTTCCACTAAATACTTTTGGCAACTCTGATCCTTTTGGTGCATTTGTTTCTCAACCTG
TATCAATGCCCGATGAAAAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019