Detail information of Os01g0104600_circ_g.1


General Information
CircRNA Name Os01g0104600_circ_g.1
ID in PlantcircBase osa_circ_000043
Alias NA
Organism Oryza sativa
Position chr1: 251691-256094  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene Os01g0104600
Parent gene annotation Homolog of Arabidopsis DE-ETIOLATED1 (DET1), Modulation of the A
BA signaling pathway and ABA biosynthesis, Regulation of chlorop
hyll content (Os01t0104600-01);Similar to Light-mediated develop
ment protein DET1 (Deetiolated1 homolog) (tDET1) (High pigmentat
ion protein 2) (Protein dark green). (Os01t0104600-02)
Parent gene strand -
Alternative splicing Os01g0104600_circ_g.2
Support reads 25
Tissues seed
Exon boundary   No-No
Splicing signals   TA-GC
Number of exons covered Os01t0104600-02:3
Os01t0104600-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGCCATCATCAGTGAATTTACGAAATGAATAATCTGGGCAATCTATGTCACATATAGTGTAAC
TCGGAACCAAGTTCTCATAGAACTGTCTAACAGTGTtaaccaaggtctgatcagattcctcatt
ccatgtcttgcgaaaaataaatgacaacaaccgttgcttgatgccaggaagaaaagaaacacct
cgtgcagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TAACCAAGGTCTGATCAGATTCCTCATTCCATGTCTTGCGAAAAATAAATGACAACAACCGTTG
CTTGATGCCAGGAAGAAAAGAAACACCTCGTGCAGCCTGCAGGCATCAAGTACATTGACAGTTT
GTGATTCATACGTAGATTTGATTTAGATTTATCGTGCATAAGTTCATAACTAGAATAATATCAA
CTATTGTTGATCAAGAATAATAGATCATGGACATGAATATTTTCCTAGACTGAGAAGGCGCTTT
TGTGCAATAAAAATAGTGGGGGAAACAAGGAGCCAAAGTTAAAAAAAAATCCAAAGAACTAGTA
GTAATGAATGAATGAATGAATGAACATGGTGGAAATAAAATTACGAGAAATATATTTCAAGCAA
CAAATGGGGAAGTGCATATCTGCTTCTCTATCACTAGTCTCCTGTAAGTTATACCGTTTACATA
ACAGAAACAATATGAAAACAATAGAAGAATGTCATTAGCAAATAGATAATCAAATATGTCAGAA
CAAAAGCACTCCTGGACAGATGCAGGCATACAATTTTCTTTTCTTTCTCTCTATTTTTAACATA
GCACCAAAAATATTGCTTGCTACAGTCTAGAAGATCAATTCAGTCCAATAAATATTCTTGGTTA
TAGCCTAATTTATTTTTCAGCAAAGAATGGGTGTTGAAATCAGTGGTTATTGACCTATTTGTTG
TTTTATCTGGCAACCCATTAAAACTGGAATGATTACTCCTCTTTATATAATCTCCTGGTGATGC
TCCAGTAGCTCTCATATATTAGTTTACTTAAACGCCGTGGAAATGCTTGAGAATTAGAGCGCCA
CGTCAGCGTATTTTTGCACAAAGGTCCCTGAACTTCCAGTTAATTATGTGCCAGTCCCAGCTAC
CCCACCGTCCGATCTTGTGCTACGATCGATCTGGGTCGTACATCTGTCCTACCGTGCCGGCGCT
TCCACACCTGTGATATCGTCGGATCACAAACGGACGGCAGAGATTGCACCAAACCCTAGCCTCA
TTGTCCGCTTCGCCCGCAGCCGCGCAAGCGCGCCGCCTCGCCTCCTCCTCCCTCATGCGCGCCG
GCCCGCTCCCTCGCTCTTCTCCTCCCCTCGCATACGCCGTCATCGCCGTTGTCGCCGCCGCCAA
CGTCGCCGCCGCCGACATCACCGCAGCTGCCGCCACCGCGCTCTTCTAGCCGTCATTGCCACAT
CGGAAGATCCAGCCACCCGAACGAGAGGTATGCTAGCGGCTGCCCTCTTTCTTTCTTTTTTTTC
CTTACAGCGATATTCCTACTGAAGAAAGCAGAGGAGGGTGATCCCATTGTGCTACTGCTAGACC
CAATGGAATTGAAGTGAGAAGGGAGCAATAGAGGAACTAGGGGAAAAGATGGGCAAAAGATTGT
GCTACTCTGATGCAGTTTTCAGAGACTACATTATTTATTTATATTCAGACCACATTCCAATTTA
TGAGGTAATTGGTTCATGCTTCATCCTAATTTCAATTATATGATTTTCTTTTCTTAGTATGCAA
TTTACATCTAGCTGATATTTGCAATCTTTGAAGTCCAAATCAGAGAATGTGAAAAACTGCAAAG
TTGCAGGTATCAAGTTTAAGGACAGAGGTAACTTCTGATAAGAAGTCTGTGTATTGCAGTTCGA
CTATAACTTGATCTGTCAACTTGCAGAGGGTTTTCACCCCATTTACATGGCAGATAATGCCATT
CTTTGTATATGGAAGTTGTAGAATTCAGCTCCTTAATCCAGTACTTTCATATTTGCTTTAGTTG
TCATATTAAATTTTCAAATCAACTAAGTTTTGGTTCATCATGTTTTTAATTTGCAGAATATTAC
AATCATGCAATGTTTATCTCATCGACAAACTGTTGAATGACCATCATTTTGGAAAATGAACAAG
ACATCTCACTTTCAGCAACTGCTGATGCTTGCATTTGAATTATATTGAGGTATCCAAACTTCCA
GAGCAATGTTCTATTCTATTTCAGCAAAATGATTTAGGCTTAATTCATCATGATGTCAAATGTC
AAGTATATGCTCTGTCCCACCTATGAGAAAGCAACAACCTATCTGACAAAGTGACAGTTATAGT
TTGTAGGTCTTCCAATTTATATGTACAAGATACAAATGAAGAATATTCATAAATGATTGTGGGA
TAAGTTCAGACCCACATGAAAGGTTCTGCAACGTGTTTTCAGTTTTGATTTTTTTTAAAGAGAT
CCTATGAGAAATTCTAGATGCGCTTCTTCATTCTATGATGGGTTGTCTATATACATTAGTTTTC
CTTGATTACACATGAGCGCATGTACCACTAATATAGTTGCCATCGGCTCCATGTTCTTCCTATT
TCTTTACAAAATATCCTATTGTTATAGCAAGTGTACTTACTTTTTGGATAGGAGTTCATGAAAA
TTGTTCTTTTGTATACAGCATCCATGATTTATATTTATGTCTTAGTTGTTCTTTATCTTGAGAC
AAGCAAGGTGACAGATCCTTCTTGCAAAACAAAACTCCTACTTTTGTTGAGAGGGGCAACCCAT
TGTCCTCAGCTCATGAAAAAAAATAATGAACGAAGCTATCAGTTGAAGAACCAAGCACACTAAG
ATGATAGAGGCTTATATGGTATATCTTGGATTGCATGACCACTTACCTGAGCAATAATTTCCTT
CTCAATATGGAACGATAGCCATATTTCACTAACTACATGATCTGTTATTTTTCTACCACATATT
AAGTTTTCACTAGGTTAATTATTACAATGCAGTTTAGTTCTTTGTGATACAAATGAGGCATTTT
AGTTAAGTCGTATGGAAACACCATTTCTCCCTACTTCACAGCCATACATATTTTAGTTTTTTGA
GTTAGTCATGCTTCCCTTACCAACTTCTCTATATATTTTGTGGGCATATTTACCTTCTATTGTA
AAAACTGTCTAGACCAATTCTCATGGATTGCTCTTATTATTATCATTGTAGATGGTGATAGGGA
TCAGCAAGCGTGCAGTACATCTCAAGCACCTGCAAGCTGGTGGTTGGATCTTTACTGGCCATAG
CTACTAATTCTTTTTTATGAAAAAAATTCCTCAATCAAATAAATCTCAAATATCAGATTATATC
TGGTCAGTGTAACTAATGTGTTATCCTGACTCTGAAGTCAATTTTGAATAATCTTGAATTGGAT
CAATGCAAAGATATCTTCTATTCTTTACCCTTTGCATTATCGAGGATTGGTGAACATGTTAAGT
TCAGATGTTACGGTGATATCTATCTTTTGGGGGAAGCAAGATAAATTTATACCATATTTTACCT
TAATGATGCAATTTAGTTTTTTTATTTACAATTTGATCATATTACAGAGCATGCTTGGATGGCA
GAGCAAAGAAAAGTACGAAGTATGGTGAAAGATGATTTTTGTTTTAAGTGCAAACAGTAATTGT
TAGATCACACGCAGCGTAGCGCGTGCTTCTTTCTAGTTACTATTATTTGAACTATGAATGCCCA
TGGTTCCAGTGCAATCAACACCAATTTGATTAGACAGGTAATACATGACCAGTACCAACTATGA
TGTAAACTAAATATAGATCCAGCAATCTTGCCGTAGGGATCAGTAGGTACCTGACCATGTGAAT
GGAGAAATAGCTCATCATCTTCCTGGCAAAATGCACCAATTTTGCGTACTTCAACAAGGTTGCC
TGAATCTCGTATCTGTAGGACATGAATTGTTTGATATCGAAGAGAGACAATGCATAGCAGGTCC
TCATACAAGTAAGCTCCAATACTATGAGCCAGATTGATAAAATCATTGCGGAAAGCTTTCTCAT
CTAGTATTGCGCCATCGTCTAGCCTGAACAAGAGAAATATAGAAGTCGAGAACCATTCAAACGA
AAGGAAAGGATGGTTATAATACATAGACATCATAACGGACAACTAAAAGTGCATTCCTAGCGAA
ACAAGATGATTGTACCTGACAAGATAGAAAGTAATTTTCTCAATTGATGGTACCCCATGAATAG
CACCCTCAGTGGCACTTGAATCGTTGCTTTGTGCAGTTGATGTGGCAAATAAGCCAAACTGATG
GCACTCCATGTAAAGGAAAAAGTCCTTGCAGATGTATTCATTGCTAGATGCAAGTGAAATTGAG
TAGAGCTGCTTAAAGAAGCTGTCGAATTTCTTTGCTTTGGGTGGAAGATCATGAGAGTCGCATG
GCTCATTGCATGAAAATGTTGGCCAGATGGGACGGTACACGATTAAATCTTGGTGGTTCCGGCT
AAAAGCCACAAGATAGTTGCCATCATCAGTGAATTTACGAAATGAATAATCTGGGCAATCTATG
TCACATATAGTGTAACTCGGAACCAAGTTCTCATAGAACTGTCTAACAGTGT
Conservation Information
Conserved circRNAs NA
PMCS 0.228504808
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017