Detail information of Os05g0586600_circ_g.6


General Information
CircRNA Name Os05g0586600_circ_g.6
ID in PlantcircBase osa_circ_042205
Alias NA
Organism Oryza sativa
Position chr5: 29226360-29226461  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRI-long
Parent gene Os05g0586600
Parent gene annotation Similar to SIGE (RNA polymerase sigma subunit E); DNA binding /
DNA-directed RNA polymerase/ sigma factor/ transcription factor.
(Os05t0586600-01)
Parent gene strand +
Alternative splicing Os05g0586600_circ_g.3 Os05g0586600_circ_g.4 Os05g0586600_circ_g.5 Os05g0586600_circ_g.7 Os05g0586600_circ_g.8
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os05t0586600-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCACCTACGCCCTCTTCTGGATCCGCCACTCCATCGTCCGCGCCATCACCggcttgatcacgg
cgatcgaccggttcgagcccaagcgcggcttccgcatc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 102
Transcript exons: 29226360-29226461
GGCTTGATCACGGCGATCGACCGGTTCGAGCCCAAGCGCGGCTTCCGCATCTCCACCTACGCCC
TCTTCTGGATCCGCCACTCCATCGTCCGCGCCATCACC

Genomic sequence GGCTTGATCACGGCGATCGACCGGTTCGAGCCCAAGCGCGGCTTCCGCATCTCCACCTACGCCC
TCTTCTGGATCCGCCACTCCATCGTCCGCGCCATCACC
Conservation Information
Conserved circRNAs NA
PMCS 0.297382843
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study