Detail information of Os05g0586600_circ_g.7


General Information
CircRNA Name Os05g0586600_circ_g.7
ID in PlantcircBase osa_circ_042206
Alias NA
Organism Oryza sativa
Position chr5: 29226395-29226597  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0586600
Parent gene annotation Similar to SIGE (RNA polymerase sigma subunit E); DNA binding /
DNA-directed RNA polymerase/ sigma factor/ transcription factor.
(Os05t0586600-01)
Parent gene strand +
Alternative splicing Os05g0586600_circ_g.3 Os05g0586600_circ_g.4 Os05g0586600_circ_g.5 Os05g0586600_circ_g.6 Os05g0586600_circ_g.8
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   AT-AA
Number of exons covered Os05t0586600-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCGTACGTACTCCTCCTCCTTCTTCTTCTTCAGCTCGATCTCGTCTTGTCCAATCTTCAGATT
GGCTGATTGATTGATTGGGTGCAGGAGAGGCAGGAGgcgcggcttccgcatctccacctacgcc
ctcttctggatccgccactccatcgtccgcgccatcaccctctccaacttcacccgcttcccct
tcgccatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 118
Transcript exons: 29226395-29226500,29226586-29226597
GCGCGGCTTCCGCATCTCCACCTACGCCCTCTTCTGGATCCGCCACTCCATCGTCCGCGCCATC
ACCCTCTCCAACTTCACCCGCTTCCCCTTCGCCATGGAATCCGAGAGGCAGGAG

Genomic sequence GCGCGGCTTCCGCATCTCCACCTACGCCCTCTTCTGGATCCGCCACTCCATCGTCCGCGCCATC
ACCCTCTCCAACTTCACCCGCTTCCCCTTCGCCATGGAATCCGTACGTACTCCTCCTCCTTCTT
CTTCTTCAGCTCGATCTCGTCTTGTCCAATCTTCAGATTGGCTGATTGATTGATTGGGTGCAGG
AGAGGCAGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.28539179
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study