Detail information of Zm00001d040470_circ_g.2


General Information
CircRNA Name Zm00001d040470_circ_g.2
ID in PlantcircBase zma_circ_001362
Alias circ603
Organism Zea mays
Position chr3: 45280591-45284884  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI
Parent gene Zm00001d040470
Parent gene annotation Exonuclease domain-containing protein 1
Parent gene strand -
Alternative splicing Zm00001d040470_circ_g.3
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d040470_T015:2
Zm00001d040470_T017:2
Zm00001d040470_T018:2
Zm00001d040470_T009:2
Zm00001d040470_T016:1
Zm00001d040470_T013:2
Zm00001d040470_T007:2
Zm00001d040470_T012:2
Zm00001d040470_T006:2
Zm00001d040470_T011:2
Zm00001d040470_T004:2
Zm00001d040470_T001:2
Zm00001d040470_T002:2
Zm00001d040470_T014:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAAACCCTTCAACACCACCTATCTGCTCTGGAGAGTTATACTGAGAAATATTTGGCTTGAGGC
ACCCTAGTGGTGCCTCATTATTAACTTGCATTTCCTcctgttaaaataagggggcttcctgatt
ctcttaaatctgcattccgactccagcattatacggcagtcccagttagaccaggtcacaatag
caaagttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTTAAAATAAGGGGGCTTCCTGATTCTCTTAAATCTGCATTCCGACTCCAGCATTATACGG
CAGTCCCAGTTAGACCAGGTCACAATAGCAAAGTTTGTGTTCTTGATGCCCTTGTCCTCTAGCC
ATTTATCGTGCATGAGTAAGGCTTCACCTAGAGGCACACCTCTGTCCACCTACACATGCATGGA
TCTTGTTCATATGACAACAATAATATTCAAAACTGGCACACAACGATAATGCCACGGAACCAGT
GGTTTCACACATGGATTGTGTTCAAAGTGTGAAACAAAAACGAAGGTACACAAAACAAAGGTGA
TCCCTTTATTTGCTGAATGTATTTACTAAACAAATATTGAACTGCAAAACTCCAGCACCAACAT
TCCAACTAGAAATAACCAAAATGTATAATAACTAATACTACAGTGGTAATATTTCAATTAAATA
ATAGAAGGATTAAATTGAACAGTTAGTAAGAGCTTGTTATCTGCTAGCCTTGAAAGCTAAGGAG
CAAAGCTACATCGTCATCAAAATAGCAGCATTTTCTTTCAGAAGAGGAAAGAAAGACTTCCTTA
CAGTTTTTAGTTTACAGACCAATTTCTAGTTTTTTTTCTCGAACGCGCGCAGGAGAGCTGCACA
TCATTATATTAAGAAAAGGGGTCCAAATTAGACCAACAGTCACCAAAATGGACCAATTTCTAGT
TAAAAGCATGGTTTTCAAATCGTCCGATTAATCACGATTAATTGTCTTGGTCGGTCACATGAAG
TCGATTAGGGGCTCCGACCCAATTAGGTTGGACGAGTAATCATCGCCTAATCGCGACTAATCGG
CCGATTAGGTATTTGCTGCGATTAGAAGTTGTGAGCATGGAAAGCCAGCGCTGGGTCCAAATTT
GTGCCTCGGATGCCTTATTTATTGGGACTAATAAAGGAACCATTTAGCTGATTGGCTGGCTTTC
CAAATCTGTGTTCCCTCTCTGTCTCTTCTCCTTCCTAGCCAGCCGGCTGCTAATCCATCATTCC
TAGGCTCCAGGCGACTCCTCATTCCTCCTCCCTGAAAAAACATATGTCTGCTGATCCTTGACCA
ACTCTGATGGCTAATCCCTGATCAAGAAGACAAGAACCACCTGCTCCTCCAGTCCTTGACCAAC
TCCGGCGACTACTTCACTCCCTGACCAACTCTGGCGGGCGACTCCTCTGTGATCAAGAAGGCAA
GAACTCAAGAAGATGAGTACCTCATCTGAAGGTAACATGATCCCTGTCCCTGATCAAGCATGTA
ATACCTCATCTATAGTACACCATCACAGTTTGGTTTCAGTTTAGAATTATTAGATCCACCTTTT
CTCCTTGTTCAGTTTAGCATTCAGTTTGGTTTCAGTACTACACAAATATGATCCACCTTTTCTC
CTTGTTCAGTTTTAGCATTCAGTTTGGTTTCAGCTGTAGTTTTGATTACCTACTGCTGTTTGAA
GTATATTATATAGTATATAACTATACACTTTAGTGTATATAACTATATATAATTATATATGTCC
TTGTTAGTACAGGACGTTTAGGATGACTAGGTGGACGACCTGTCACCGATTAATTGGCCTGGTC
AACGTCCTAATAGTGATTAATTGCCTATAATTGGTCACCATCAACGACCTAGCGACCAGGCGAC
TTTTTTTCCTCAAATACGCAGGAGAGCTGTGTATCATTATATTAAGAAGGAAAAGGGGTGAGGT
GTTAAAAAACCTCGTACAACTCTACACAAAACCACACACTATAGTCTAGGATGTGATGTCCGCA
GGCCACAGGGCTCCATTAGGTATGGCCTCTCCACCTCCCAACCCCGTCCCCTCTCCCCCGCCCT
TCCACCACCACCCTACACCACCACCTCTCTCCGGACTCCACCCCGGACTTGTTTAATGTGATAT
ACCAGAGTTGTAAACTGAGTTGAAAACTCTGCAGCTGAACCAGTTTGTTTCAATGTCAGTAACT
CTAGCATTTTATCAGAGTGGGTGTATAAATCAAATTCTCCCAGCACCGCCTGACTAAAATGGTT
CCAATCCACAAATAGTATTGACTCTCTGCAAGCCTGAAACCAGTGAGCAGCCCTCCCCTTCAAA
TGCATGGATGCTGCACTGATCTTAAATTCCTCAGGAATTTGATACAAGGTAAAATATGCAGCAC
AATTATGCAACCAAAATTCTAGCATATGTGCCTTCAAACTGTGGAAATTCCTTCTTAGGCAATC
ATTGTCTTCGATTGGCACCATCAGAACTCGAGGATTCATGCTCGTTGTTACCCCCAAACTCATG
CACCACCGGTTGCGTCGGTTCAGGATGCGATACCTGAGATATCGGCGGCGGAGGAAAAGGGTGT
GCATCCATCAACCCAGCACTGTAACTCGGCATCGACGTGCGCGCAGCTAAAGCTGGAATTAGGT
TGCAGCTGACACCGTGTTGGAGAGGCGCGTCTGATCCTAGGCTACCTGCGCCAATGATTTCATG
GAGAGATCGATCTTGGCCTGTAGAAATTGCACTTCCTTCTCGTGACCCATCTGTCTCTTCTCAA
TTTCAGCCAATTTGTTGTGCAATGAACCGAGTCCATCGATCTTCTTGGACAGTTCCTGGAGAGC
CCGCAGAGGTGTCCAACACCTGCTGAAACTTGGTCACCAACCTCTTCTCGACATCTTCCATGGC
CGCCATCATGTGCTGCGTCTGCACGGAAGGACGACTCGGCGCCGTTGTAGCAGACGAGCTGTGT
CGCCGAGAAGTAGAACACCGCATGACCAACGCTCTAGGAACTCCGCCAGAACGAAGAGGAGCCT
GAATCTGTTACCACTTGTGATGTCAGCAGGCCACAGCGTGCAGGACTCACCACGTCGGTTTGGG
AAGCAGCAGTAGATGAGGAAGAAGGAATATTAAGAAGGAGCAGAGCGAACAGAAATTTGGGGAA
GAGGACGGTAAGTCTGTTATTTTCCTTCCTGAGTTCTCATACAGCCTCTTCTTACACTTTTATA
CTGACTACTAATGGGATAACAAAATATACGGCCCAAGCCTCTATTACAAGAATCCATCAAGGAT
TAGACTCTACTCTTCTTACTCAGTAGAACTTGTTGAGCGCAAATGAACGAGGCCTGACATAGGT
GCATTTATACAAGAGAAGGACTGGACCCTACATCATGCAGAATTGCAGACTGGAGACCAAATCA
CCAAATGGAGACCAGGTGACTTGAAAACTATGGTTAAAAGATGTCTTGTTGGTATCAAGAAATT
TTGTTGGTATATGCACCATATGTGCCATTGTGCCCATGCATCTAACATTGTTTCTTTGTCAATT
TATTAGCCCCTATTATCTCAAATTCCTGGTCCCACCCATTGCCACACACCACACGTACAAACTA
TGGGTCATAATTCATAAACAGGTCTTTATGTTCGTCAGCATCTAAAGGGTGAACAAAAAATGTT
AGCTTATTTAATCTGGTTATAACAGACATTAGATCAGCATTTCCAAAGGTAGCTTGAAATTCAA
AGTAAGCTATTTGTGTGTTTATATAACTTGTATAGTTGACATTGCATTGAAAATAATTGGTTCC
TTGCTTTATATACACTTGAGTATATGACTAGTCAGTCAACACACAAAATTCTATTAGCCTAAGC
TATCATGATGACACTTATTCAGTACTATGACCTCATGATTATTCAGATTATGCACTAACCTGAA
TCTGTTGTATGCCAGTAAGCTCCTTGCAAAAATCAGTCAAAAATTGATGATACGTCGGCCGAAC
ATATGTTTGGAAGCATTCTTCGAGTTTTCCAGTTGCACTGTTAACCAAGACAGATGGAAACTCG
ATGATTTCTTGTGGAAATGGATTGTTCACCTTGTCACAGGTTGCTTCAAAGTCAATAACCACAA
AATACTGAAATTCCTGAAGCTGTGCATCATGGGGGTGACCTTGAGGGAGCATCTTGAATGGAAG
ATATTGAACCCTGTTCTCAATAGGGAAACCGTGGTCCCTATTTATCTGATAAAATTGGTTGTCA
AAACCATAAGGTAGTGGCTGACGCACGATTTGATAATCTGAATAAATATATGGCCAGGCATAAA
ATTCTTGTCGGTAGATGGGCCTGCTAAGGCCTTGGTTTGGAGTCGCCTCCCAGATTTTTTCCGC
AGCAACAATATCATTCCTTTTTTCATTATTCTCAGGAAACCCTTCAACACCACCTATCTGCTCT
GGAGAGTTATACTGAGAAATATTTGGCTTGAGGCACCCTAGTGGTGCCTCATTATTAACTTGCA
TTTCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.008947368
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b