Detail information of Os01g0501800_circ_g.1


General Information
CircRNA Name Os01g0501800_circ_g.1
ID in PlantcircBase osa_circ_001824
Alias Os01circ12581
Organism Oryza sativa
Position chr1: 17349379-17350028  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method SMALT, Segemehl
Parent gene Os01g0501800
Parent gene annotation Similar to Photosystem II oxygen-evolving complex protein 1 (Fra
gment). (Os01t0501800-01)
Parent gene strand +
Alternative splicing Os01g0501800_circ_g.2 Os01g0501800_circ_g.3 Os01g0501800_circ_g.4 Os01g0501800_circ_g.5 Os01g0501800_circ_g.6 Os01g0501800_circ_g.7 Os01g0501800_circ_g.8 Os01g0501800_circ_g.9 Os01g0501800_circ_g.10 Os01g0501800_circ_g.11 Os01g0501800_circ_g.12 Os01g0501800_circ_g.13 Os01g0501800_circ_g.14 Os01g0501800_circ_g.15 Os01g0501800_circ_g.16 Os01g0501800_circ_g.17 Os01g0501800_circ_g.18 Os01g0501800_circ_g.19 Os01g0501800_circ_g.20 Os01g0501800_circ_g.21 Os01g0501800_circ_g.22 Os01g0501800_circ_g.23 Os01g0501800_circ_g.24
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os01t0501800-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGAAGTTCTGCCTGGAGCCGACGTCCTTCACCGTTAAGGCGGAGGGCGTGGCCAAGAACGCG
CCACCCGAGTTCCAGAAGACCAAGCTCATGACCCGCcaactgagagctgagcaggcgagcgagc
ggacatggcagcatcgctccaagccgcggccaccctgatgcagccggccaagctcggcggccgg
gcctcctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAACTGAGAGCTGAGCAGGCGAGCGAGCGGACATGGCAGCATCGCTCCAAGCCGCGGCCACCCT
GATGCAGCCGGCCAAGCTCGGCGGCCGGGCCTCCTCCGCCGCGCTGCCATCGCGCCCGTCTTCG
CACGTCGCCAGGGCGTTCGGCGTCGACACCGGTGCCGCCGGCAGGATCACGTGCTCCCTGCAGT
CCGACATCCGGGAGGTCGCCAACAAGTGCGCCGATGCCGCCAAGCTCGCCGGCTTCGCCCTCGC
CACCTCAGCTCTGCTCGTCTCGGTAAGACCTTAATTAGGATTTAGGAGTATGTTGCATGGCGCC
ATGGCCAAGGCCAAGGTGGAAACGATCGAATTACTATATATGTAACGCCGTGCATGTGGTGGCC
GGCCGGTGTAGGGCGCCAGCGCGGAGGGCGTGCCGAGGAGGCTTACCTTCGACGAGATTCAGAG
TAAGACGTACATGGAGGTGAAGGGAACCGGCACGGCGAACCAGTGCCCGACGGTGGAGGGCGGC
GTCGACTCCTTCGCCTTCAAGGCCGGCAAGTACAACATGAAGAAGTTCTGCCTGGAGCCGACGT
CCTTCACCGTTAAGGCGGAGGGCGTGGCCAAGAACGCGCCACCCGAGTTCCAGAAGACCAAGCT
CATGACCCGC
Conservation Information
Conserved circRNAs NA
PMCS 0.275264128
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015