Detail information of Os01g0501800_circ_g.23


General Information
CircRNA Name Os01g0501800_circ_g.23
ID in PlantcircBase osa_circ_001841
Alias NA
Organism Oryza sativa
Position chr1: 17350394-17350433  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method circRNA_finder
Parent gene Os01g0501800
Parent gene annotation Similar to Photosystem II oxygen-evolving complex protein 1 (Fra
gment). (Os01t0501800-01)
Parent gene strand +
Alternative splicing Os01g0501800_circ_g.1 Os01g0501800_circ_g.2 Os01g0501800_circ_g.3 Os01g0501800_circ_g.4 Os01g0501800_circ_g.5 Os01g0501800_circ_g.6 Os01g0501800_circ_g.7 Os01g0501800_circ_g.8 Os01g0501800_circ_g.9 Os01g0501800_circ_g.10 Os01g0501800_circ_g.11 Os01g0501800_circ_g.12 Os01g0501800_circ_g.13 Os01g0501800_circ_g.14 Os01g0501800_circ_g.15 Os01g0501800_circ_g.16 Os01g0501800_circ_g.17 Os01g0501800_circ_g.18 Os01g0501800_circ_g.19 Os01g0501800_circ_g.20 Os01g0501800_circ_g.21 Os01g0501800_circ_g.22 Os01g0501800_circ_g.24
Support reads 7
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os01t0501800-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGACCGGCGAGGTGATTGGCcgtcaccaagagcaagccag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTCACCAAGAGCAAGCCAGAGACCGGCGAGGTGATTGGC
Conservation Information
Conserved circRNAs NA
PMCS 0.2375
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017