Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d011622_circ_g.2 |
ID in PlantcircBase | zma_circ_009747 |
Alias | Zm08circ00066, zma_circ_0002822, GRMZM2G175661_C1 |
Organism | Zea mays |
Position | chr8: 156366130-156366521 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d011622 |
Parent gene annotation |
Putative zinc finger protein |
Parent gene strand | - |
Alternative splicing | Zm00001d011622_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d011622_T012:2 Zm00001d011622_T013:2 Zm00001d011622_T003:2 Zm00001d011622_T038:1 Zm00001d011622_T016:2 Zm00001d011622_T001:2 Zm00001d011622_T009:2 Zm00001d011622_T026:2 Zm00001d011622_T018:2 Zm00001d011622_T030:2 Zm00001d011622_T004:2 Zm00001d011622_T021:2 Zm00001d011622_T025:2 Zm00001d011622_T028:2 Zm00001d011622_T006:2 Zm00001d011622_T023:2 Zm00001d011622_T020:2 Zm00001d011622_T035:2 Zm00001d011622_T002:2 Zm00001d011622_T031:2 Zm00001d011622_T008:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.377633707 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
156366453-156366158(+) 156366307-156366298(+) 156366450-156366497(-) |
Potential amino acid sequence |
MEEINTKTFPKTTQITKRTVVHSPPYLPRICSR*(+) MKWPQGRALTAALDVNRKSQHIGQFVSSPFSRHLCSVNFIPRQQLHFMQWKKSTPRPFPRRHKL QNGQWYTVRHISQGFAADRASVVTTSVCLKAS*(+) MKCNCCLGMKLTEHKCREKGLETNCPICCDFLFTSSAAVRALPCGHFMHSACFQAYTCSHYTCP ICCKSLGDMADCVPLSVL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |