Plant Circular RNA Database

Detail information of Os02g0740300_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0740300_circ_g.1
					
						ID in PlantcircBase
						osa_circ_016480
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 30960765-30964081  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0740300						
					
						Parent gene annotation
						
							ATPase, AAA-type, core domain containing protein. (Os02t0740300-
01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0740300_circ_g.2 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0740300-01:8

General Information
CircRNA Name	Os02g0740300_circ_g.1
ID in PlantcircBase	osa_circ_016480
Alias	NA
Organism	Oryza sativa
Position	chr2: 30960765-30964081 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0740300
Parent gene annotation	ATPase, AAA-type, core domain containing protein. (Os02t0740300- 01)
Parent gene strand	-
Alternative splicing	Os02g0740300_circ_g.2
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0740300-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CGCCACCACCTTGTTCTGCCTCAAGTCCGATATGTGTTACGAGATCAACAATAAGGTCTGATAA
GCTACAAGTTGATGGTACATTAAATTTAACGACCACctgatgagggcaggatcaaggtcttcct
ttctatttgttgcagcaataaccacaacacgtctatcctgctcaaacccatcaatcttcataga
gacaattt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGATGAGGGCAGGATCAAGGTCTTCCTTTCTATTTGTTGCAGCAATAACCACAACACGTCTAT
CCTGCTCAAACCCATCAATCTTCATAGAGACAATTTATTTAGTGTCAGTAAAAAATATATTCTA
GGACATCAATTGCCATAAGCATGATGGTGACACCTAAGAGACTGCATACAAAGATTTCTCGCAA
AACTTAGTGGTTTCAAGATTCCGTGATAATGCTGACATGGTTTATATGCCTATATCATATTACA
GTACTTCAAGAAAGCAATAGAACAGTAATGGACTTTCAGAATAAAGAAAGCAATAGTAAATAAC
CGCAGGAAAAAAACATGAAAAAATCCTGCACAATAGTTTAGCTACAATACATAATTTCTGCAGC
CCAGTGAAATTTTATCCATCCCTTATTTAATTGGAGTTAAAACTCCTATGTTTTACACAGGTTT
AAACAGTATTACCAAGTTTGCAATAAACACTGATGGACAGTGAAAAAAAATGACAGTTAGAAGT
ATAGACAAACTCAACAAACATATTTACATCAGAGATTACCAGTATCCAGTTTAAATGGAAACAA
ACACAAACCCTACCTGCCGCAAAATTACTGATAATATCCTTCGTGTAGCTTCATGCATTTCACT
ATCTCGAGCGCTAGCAAAAGAGTCTACCTGTAACATGGACGTTCAAATAGCAAGATGTTGCATT
AATACCTTAGTATAACCAACAAACAAAATTCACTATGCCCCTATACTATAAACTGCCCAATAAA
AATGAAGAAAAACATGCTATGCATGTGATACAGTTTTTGTACCCTACAAATCCACAATATATCT
CCGTTAGAATTATGTTCTAAAAAGTGTTGCTCGGGAATATATTATGAATGACATTTAGTTTAGT
TGTTTTTCAGGTGAAACTAGATCTTCAGTATCATATTGGAAGGTGGTACATATCAGTTAGAAAC
CAGCAGTGCAACAAAAATCAAACTAGTAACTCCTTTCAGCAGAAAAGAACAATGGTATATCCTG
ACAGTTCCAGTATGCTAGGCAGTATATTTCCTGTACATTTTTACAACAGTTGAAGTGCCCTTGA
TACCTGTATACTATAAAGATGAAACATACCTCATCTAGAAAAATTATACCTCCATCAGGAAGGT
CATTGGCAAGTGAAAAAACAGATCCCAAAAGGCGCTCGCTTTCACCATAATATTTTGACATTAT
GATTTCCAGTGGCACATATAACAGCGGAACTCCCTGTCATAAGAAAAAGGCAATCAACCAGCTT
AATACAACTACAATTCAGCTTAAAAGTTGCAAGAAAGGAATAGCATGTTTGTAAAATCAAGAAG
TTTACAAAACGTGAGAGTACTTAGTATCACTTTTTTTATAACACAGAATTACTTTGGGGCAATC
TCAATAAGATATCACTTACAGCTTGCTTGGCAATAACTCGAGCAGAAGAAGTCTTACCAGTGCC
TGAAACAATGAGACCAAAGTAACTGTTAAGTATGCAAATACAGCTTGAAATGGAAGCAACCATA
CTAGCAGTGCATAAAAGGGTATCTCATATATTTACTTTCAATGGTGTCACCAAGCTATCTACTA
CTGTTACCAAGCTATGAACATCATGAAACAAGATAACGCAAAGGCAATGGCAGTGGTTTCTTGG
TACAGAAACTCCAATCAACGCAAAGCACCATTCAGGTTACTCACCTGGTGGGCCTTCAAACAAA
ACAGCTCGAGGTCGGTTTGTCTCAAATTTGCATCGTGTAGCACGGGCAATTTCATCGTACACTT
CAGGGCTCTGTAAAGCCAAGAGGATAGTGTCCTCTATCTCCCTATAAATGGAAAAAGAAACATG
CACCAAGTTTAAAAACTATACTTTCAGAAGGAACACATAGAAGGAATTGCCCAATAGGAAGCTT
TGACGAGCAGCAAACAGGACTCGTGATGTGTCAAATGTCAAGGAAATGCCAAATAACCATGAAG
GAAAAAATATATGTGCAGGGAAATGTTTATCCCCTATGCTTAGACAATCACACACATAATTACG
TAGATAATATATCCACGATACTAATTTTAATCTAATGCAAATTATTTGCTTCTTTGAGTGGTGA
AAGTTACGGATATGAAAAATGTTTATTGTGCTTTGAACACACAAAGCATCTCAAAACTTACAAA
TGAGAAAAACAAAATAGAGTTGTAGTAAACAAACCTTTTCTGAGGTTCATATCCAGCAATGTTC
TCCCACATAACAGTACCACTACCATCCATTGGAATACTTGAGGTCTCATCAAATCCATAGACCC
GAACTCCCATACCCTCTAAATCAGATATAGTTTTTTCCATAGATGGTACATGCTTGGATCTCTG
ACCATTTCCTTTTCTTGTTGTGTATGACTTATTGCCCTTCCCTGATGATTGCTTAACATCTTTC
TGGCCCACTAATTTCAAAACACTTGTCAAAGCTTCAAGCTCTCTCAAACTAAATCCACCACGCT
TGATGAATTCAACTTCCTGAAAATACACATAATGTTAAGGAATTGCATTTAATCTTAACATGAT
GATAAATGGGCAGTACATATTGCTTTCAATATCTTAATAAAGGATACATAGGAACTGACAGAAT
ATTGAGATCCCACAAGTGGTTCAAATATCAAGACACAAAGATCATCTTCATTGTCATCTCCATT
GCTCGTTGTCTTCTTGTGAGGGTTCAACGTTATCTGACGTGCAGCTACACTGGAACAGACGCAC
TTGATTAAAACATAATAAATATTAGGAACTTGGCAGACATTGGATCTATGACGTGGATAAAGAT
CATTATGCTATTTGCAGGGAGATTGTATCAGAAACACTGATGATAGGAATAACTAGGAAAGTGG
GAGCGGGGGCTGCAGGGTTAAGGCTTTGAAATTAGAGGAATCCATAAAGACATGGATAAAGAAA
CATTACTACTTATAGCTACAACTAAGTTACATCTAGACAGATAGAAATCATGGGCCAGAGATCT
AATTTGTGCAGCCTAGAAGCAGAGAATGAACATACATACATAACAAAGATGGCCACAAGAAAAC
GTACACAATACAGATCAAAGCTGAAACAGTACTGTTTGTGGTTGCGATGAATAGGACAAGATCA
CCAGATAATGGTTATGGTGAAGTGAATAACAGCCAGTTTCTTTTGCTAACCTGTTCCAAGCACG
CAGTAGCATCTCAGAGCCGCCACCACCTTGTTCTGCCTCAAGTCCGATATGTGTTACGAGATCA
ACAATAAGGTCTGATAAGCTACAAGTTGATGGTACATTAAATTTAACGACCAC
						
					

			
		

Sequences
Splice junction sequence	CGCCACCACCTTGTTCTGCCTCAAGTCCGATATGTGTTACGAGATCAACAATAAGGTCTGATAA GCTACAAGTTGATGGTACATTAAATTTAACGACCACctgatgagggcaggatcaaggtcttcct ttctatttgttgcagcaataaccacaacacgtctatcctgctcaaacccatcaatcttcataga gacaattt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGATGAGGGCAGGATCAAGGTCTTCCTTTCTATTTGTTGCAGCAATAACCACAACACGTCTAT CCTGCTCAAACCCATCAATCTTCATAGAGACAATTTATTTAGTGTCAGTAAAAAATATATTCTA GGACATCAATTGCCATAAGCATGATGGTGACACCTAAGAGACTGCATACAAAGATTTCTCGCAA AACTTAGTGGTTTCAAGATTCCGTGATAATGCTGACATGGTTTATATGCCTATATCATATTACA GTACTTCAAGAAAGCAATAGAACAGTAATGGACTTTCAGAATAAAGAAAGCAATAGTAAATAAC CGCAGGAAAAAAACATGAAAAAATCCTGCACAATAGTTTAGCTACAATACATAATTTCTGCAGC CCAGTGAAATTTTATCCATCCCTTATTTAATTGGAGTTAAAACTCCTATGTTTTACACAGGTTT AAACAGTATTACCAAGTTTGCAATAAACACTGATGGACAGTGAAAAAAAATGACAGTTAGAAGT ATAGACAAACTCAACAAACATATTTACATCAGAGATTACCAGTATCCAGTTTAAATGGAAACAA ACACAAACCCTACCTGCCGCAAAATTACTGATAATATCCTTCGTGTAGCTTCATGCATTTCACT ATCTCGAGCGCTAGCAAAAGAGTCTACCTGTAACATGGACGTTCAAATAGCAAGATGTTGCATT AATACCTTAGTATAACCAACAAACAAAATTCACTATGCCCCTATACTATAAACTGCCCAATAAA AATGAAGAAAAACATGCTATGCATGTGATACAGTTTTTGTACCCTACAAATCCACAATATATCT CCGTTAGAATTATGTTCTAAAAAGTGTTGCTCGGGAATATATTATGAATGACATTTAGTTTAGT TGTTTTTCAGGTGAAACTAGATCTTCAGTATCATATTGGAAGGTGGTACATATCAGTTAGAAAC CAGCAGTGCAACAAAAATCAAACTAGTAACTCCTTTCAGCAGAAAAGAACAATGGTATATCCTG ACAGTTCCAGTATGCTAGGCAGTATATTTCCTGTACATTTTTACAACAGTTGAAGTGCCCTTGA TACCTGTATACTATAAAGATGAAACATACCTCATCTAGAAAAATTATACCTCCATCAGGAAGGT CATTGGCAAGTGAAAAAACAGATCCCAAAAGGCGCTCGCTTTCACCATAATATTTTGACATTAT GATTTCCAGTGGCACATATAACAGCGGAACTCCCTGTCATAAGAAAAAGGCAATCAACCAGCTT AATACAACTACAATTCAGCTTAAAAGTTGCAAGAAAGGAATAGCATGTTTGTAAAATCAAGAAG TTTACAAAACGTGAGAGTACTTAGTATCACTTTTTTTATAACACAGAATTACTTTGGGGCAATC TCAATAAGATATCACTTACAGCTTGCTTGGCAATAACTCGAGCAGAAGAAGTCTTACCAGTGCC TGAAACAATGAGACCAAAGTAACTGTTAAGTATGCAAATACAGCTTGAAATGGAAGCAACCATA CTAGCAGTGCATAAAAGGGTATCTCATATATTTACTTTCAATGGTGTCACCAAGCTATCTACTA CTGTTACCAAGCTATGAACATCATGAAACAAGATAACGCAAAGGCAATGGCAGTGGTTTCTTGG TACAGAAACTCCAATCAACGCAAAGCACCATTCAGGTTACTCACCTGGTGGGCCTTCAAACAAA ACAGCTCGAGGTCGGTTTGTCTCAAATTTGCATCGTGTAGCACGGGCAATTTCATCGTACACTT CAGGGCTCTGTAAAGCCAAGAGGATAGTGTCCTCTATCTCCCTATAAATGGAAAAAGAAACATG CACCAAGTTTAAAAACTATACTTTCAGAAGGAACACATAGAAGGAATTGCCCAATAGGAAGCTT TGACGAGCAGCAAACAGGACTCGTGATGTGTCAAATGTCAAGGAAATGCCAAATAACCATGAAG GAAAAAATATATGTGCAGGGAAATGTTTATCCCCTATGCTTAGACAATCACACACATAATTACG TAGATAATATATCCACGATACTAATTTTAATCTAATGCAAATTATTTGCTTCTTTGAGTGGTGA AAGTTACGGATATGAAAAATGTTTATTGTGCTTTGAACACACAAAGCATCTCAAAACTTACAAA TGAGAAAAACAAAATAGAGTTGTAGTAAACAAACCTTTTCTGAGGTTCATATCCAGCAATGTTC TCCCACATAACAGTACCACTACCATCCATTGGAATACTTGAGGTCTCATCAAATCCATAGACCC GAACTCCCATACCCTCTAAATCAGATATAGTTTTTTCCATAGATGGTACATGCTTGGATCTCTG ACCATTTCCTTTTCTTGTTGTGTATGACTTATTGCCCTTCCCTGATGATTGCTTAACATCTTTC TGGCCCACTAATTTCAAAACACTTGTCAAAGCTTCAAGCTCTCTCAAACTAAATCCACCACGCT TGATGAATTCAACTTCCTGAAAATACACATAATGTTAAGGAATTGCATTTAATCTTAACATGAT GATAAATGGGCAGTACATATTGCTTTCAATATCTTAATAAAGGATACATAGGAACTGACAGAAT ATTGAGATCCCACAAGTGGTTCAAATATCAAGACACAAAGATCATCTTCATTGTCATCTCCATT GCTCGTTGTCTTCTTGTGAGGGTTCAACGTTATCTGACGTGCAGCTACACTGGAACAGACGCAC TTGATTAAAACATAATAAATATTAGGAACTTGGCAGACATTGGATCTATGACGTGGATAAAGAT CATTATGCTATTTGCAGGGAGATTGTATCAGAAACACTGATGATAGGAATAACTAGGAAAGTGG GAGCGGGGGCTGCAGGGTTAAGGCTTTGAAATTAGAGGAATCCATAAAGACATGGATAAAGAAA CATTACTACTTATAGCTACAACTAAGTTACATCTAGACAGATAGAAATCATGGGCCAGAGATCT AATTTGTGCAGCCTAGAAGCAGAGAATGAACATACATACATAACAAAGATGGCCACAAGAAAAC GTACACAATACAGATCAAAGCTGAAACAGTACTGTTTGTGGTTGCGATGAATAGGACAAGATCA CCAGATAATGGTTATGGTGAAGTGAATAACAGCCAGTTTCTTTTGCTAACCTGTTCCAAGCACG CAGTAGCATCTCAGAGCCGCCACCACCTTGTTCTGCCTCAAGTCCGATATGTGTTACGAGATCA ACAATAAGGTCTGATAAGCTACAAGTTGATGGTACATTAAATTTAACGACCAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.107733399

Conservation Information
Conserved circRNAs	NA
PMCS	0.107733399

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							30963975-30964020(-)
30960845-30964073(-)
						
						Potential amino acid sequence
						
							MLLRAWNSVAARQITLNPHKKTTSNGDDNEDDLCVLIFEPLVGSQYSVSSYEVEFIKRGGFSLR
ELEALTSVLKLVGQKDVKQSSGKGNKSYTTRKGNGQRSKHVPSMEKTISDLEGMGVRVYGFDET
SSIPMDGSGTVMWENIAGYEPQKREIEDTILLALQSPEVYDEIARATRCKFETNRPRAVLFEGP
PGTGKTSSARVIAKQAGVPLLYVPLEIIMSKYYGESERLLGSVFSLANDLPDGGIIFLDEVDSF
ASARDSEMHEATRRILSVILRQIDGFEQDRRVVVIAATNRKEDLDPALIRWSLNLMYHQLVAYQ
TLLLIS*(-)
MGLSRIDVLWLLLQQIERKTLILPSSGGR*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	30963975-30964020(-) 30960845-30964073(-)
Potential amino acid sequence	MLLRAWNSVAARQITLNPHKKTTSNGDDNEDDLCVLIFEPLVGSQYSVSSYEVEFIKRGGFSLR ELEALTSVLKLVGQKDVKQSSGKGNKSYTTRKGNGQRSKHVPSMEKTISDLEGMGVRVYGFDET SSIPMDGSGTVMWENIAGYEPQKREIEDTILLALQSPEVYDEIARATRCKFETNRPRAVLFEGP PGTGKTSSARVIAKQAGVPLLYVPLEIIMSKYYGESERLLGSVFSLANDLPDGGIIFLDEVDSF ASARDSEMHEATRRILSVILRQIDGFEQDRRVVVIAATNRKEDLDPALIRWSLNLMYHQLVAYQ TLLLIS(-) MGLSRIDVLWLLLQQIERKTLILPSSGGR(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0740300_circ_g.1

Address

Any questions?

Supported by