Detail information of BGIOSGA015071_circ_g.4


General Information
CircRNA Name BGIOSGA015071_circ_g.4
ID in PlantcircBase osi_circ_014379
Alias Chr04:22025325_22026090(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 19507188-19507954  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA015071
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015071_circ_g.1 BGIOSGA015071_circ_g.2 BGIOSGA015071_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA015071-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAACTTGTACGTGCATGTAGGAGACATTAATTCTCTTAATATTTCCTGCTGTTCTGACCACTC
CATGCTGGCGCTAAGGTAAGCTGCAGAAATATTTGCcctcagatttggacgattaaaactttgt
ctgaaaataatgcagtttgcaaggcctagaacttgcacgacatcttccttgacacttgcagttg
ctgttgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCAGATTTGGACGATTAAAACTTTGTCTGAAAATAATGCAGTTTGCAAGGCCTAGAACTTGC
ACGACATCTTCCTTGACACTTGCAGTTGCTGTTGCAGTCAAGGCCAGGACTGGCGTCTGCGGGA
ACTTCTGTTTTAAAATGCCTAGATGCTGATGGATAAAGAACTGGATTAAAAGGTTGTCAATTAT
TTAACATGAAAATCTGCTTCCTGACAGAAAGTACCTGGTAATCAGGTCGGAAATCATGACCCCA
CTGGCTAACACAGTGGGCTTCATCAATGACAATTCTAGAGAGATGGCCTCGCGAATATAAATTT
TCCAATTGTCTCAACAGAGCATCACTCCTGTACTCAGGAAATTAATGTGAGTTAGGCACATGAA
TTGGCAAAGCACACGTCACAAAAGAAAGGACTAATTGTGTGAGAAGCTAATACAAGCTAAAGGT
GTTGAATCTTCATAAAGAAAAACAAAGAAATGTAACCAATAGTCCAATACTAGTGATCTGGAAA
TGCGAACTGCTGCATAGTGACAGCAGGTCATTATGAGCTTACTTATACTATATCAGAAAAGACT
ACCTTTCAAATAGTCAAGAAATCATATAACATGACTACGAATCAACAGCAGAATTCCACTTACT
TGGCTATCTTTTCAGGCGTAACATACAGTAACTTGTACGTGCATGTAGGAGACATTAATTCTCT
TAATATTTCCTGCTGTTCTGACCACTCCATGCTGGCGCTAAGGTAAGCTGCAGAAATATTTGC
Conservation Information
Conserved circRNAs osa_circ_023880
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021