Detail information of BGIOSGA015071_circ_g.3


General Information
CircRNA Name BGIOSGA015071_circ_g.3
ID in PlantcircBase osi_circ_005468
Alias 4:19506977|19508114
Organism Oryza sativa ssp. indica
Position chr4: 19506977-19508114  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015071
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015071_circ_g.1 BGIOSGA015071_circ_g.2 BGIOSGA015071_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA015071-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAACCCTTTACCTGCAATAAATGCATGATCTGGTCTTGGATGAGCGATACGAGAGGAGAAAC
TACCAATGTAACGCCATTACAAATGAGTGCTGGAAGccttaatttagcagccactttctcacaa
tccatcctcgaaaggcaatatatgatgccgcattctttattatgatttgcatgtataaagttat
ggatatcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTAATTTAGCAGCCACTTTCTCACAATCCATCCTCGAAAGGCAATATATGATGCCGCATTCT
TTATTATGATTTGCATGTATAAAGTTATGGATATCCTCGAGGCACTTCTTTGTCTTGGGCCATA
CAAAATACCTGCAAAAGTTGGGCTGAGATGGTCTGGTGCAATTGGAGTTGAATGTCAATGTCTT
CTGAATTCTGATAGACTTACCTCAGATTTGGACGATTAAAACTTTGTCTGAAAATAATGCAGTT
TGCAAGGCCTAGAACTTGCACGACATCTTCCTTGACACTTGCAGTTGCTGTTGCAGTCAAGGCC
AGGACTGGCGTCTGCGGGAACTTCTGTTTTAAAATGCCTAGATGCTGATGGATAAAGAACTGGA
TTAAAAGGTTGTCAATTATTTAACATGAAAATCTGCTTCCTGACAGAAAGTACCTGGTAATCAG
GTCGGAAATCATGACCCCACTGGCTAACACAGTGGGCTTCATCAATGACAATTCTAGAGAGATG
GCCTCGCGAATATAAATTTTCCAATTGTCTCAACAGAGCATCACTCCTGTACTCAGGAAATTAA
TGTGAGTTAGGCACATGAATTGGCAAAGCACACGTCACAAAAGAAAGGACTAATTGTGTGAGAA
GCTAATACAAGCTAAAGGTGTTGAATCTTCATAAAGAAAAACAAAGAAATGTAACCAATAGTCC
AATACTAGTGATCTGGAAATGCGAACTGCTGCATAGTGACAGCAGGTCATTATGAGCTTACTTA
TACTATATCAGAAAAGACTACCTTTCAAATAGTCAAGAAATCATATAACATGACTACGAATCAA
CAGCAGAATTCCACTTACTTGGCTATCTTTTCAGGCGTAACATACAGTAACTTGTACGTGCATG
TAGGAGACATTAATTCTCTTAATATTTCCTGCTGTTCTGACCACTCCATGCTGGCGCTAAGGTA
AGCTGCAGAAATATTTGCCTGTGATAAACAACACGTGAGCAATTAGAAAATCATCAAGAAATAA
GTAGAAGGAAACAAAACAACCCTTTACCTGCAATAAATGCATGATCTGGTCTTGGATGAGCGAT
ACGAGAGGAGAAACTACCAATGTAACGCCATTACAAATGAGTGCTGGAAG
Conservation Information
Conserved circRNAs osa_circ_023879*
PMCS
Functional Information
Coding potential Y
Potential coding position 19508044-19506979(-)
19508038-19506979(+)
19508042-19507046(+)
Potential amino acid sequence MHLLQANISAAYLSASMEWSEQQEILRELMSPTCTYKLLYVTPEKIAKSDALLRQLENLYSRGH
LSRIVIDEAHCVSQWGHDFRPDYQFFIHQHLGILKQKFPQTPVLALTATATASVKEDVVQVLGL
ANCIIFRQSFNRPNLRYFVWPKTKKCLEDIHNFIHANHNKECGIIYCLSRMDCEKVAAKLRLPA
LICNGVTLVVSPLVSLIQDQIMHLLQANISAAYLSASMEWSEQQEILRELMSPTCTYKLLYVTP
EKIAKSDALLRQLENLYSRGHLSRIVIDEAHCVSQWGHDFRPDYQFFIHQHLGILKQKFPQTPV
LALTATATASVKEDVVQVLGLANCIIFRQSFNRPNLRYFVWPKTKKCLEDIHNFIHANHNKECG
IIYCLSRMDCEKVAAKLRLPALICNGVTLVVSPLVSLIQDQIMHLLQANISAAYLSASMEWSEQ
QEILRELMSPTCTYKLLYVTPEKIAKSDALLRQLENLYSRGHLSRIVIDEAHCVSQWGHDFRPD
YQFFIHQHLGILKQKFPQTPVLALTATATASVKEDVVQVLGLANCIIFRQSFNRPNLRYFVWPK
TKKCLEDIHNFIHANHNKECGIIYCLSRMDCEKVAAKLRLPALICNGVTLVVSPLVSLIQDQIM
HLLQANISAAYLSASMEWSEQQEILRELMSPTCTYKLLYVTPEKIAKSDALLRQLENLYSRGHL
SRIVIDEAHCVSQWGHDFRPDYQFFIHQHLGILKQKFPQTPVLALTATATASVKEDVVQVLGLA
NCIIFRQSFNRPNLRYFVWPKTKKCLEDIHNFIHANHNKECGIIYCLSRMDCEKVAAKLR(-)
MHDLVLDERYERRNYQCNAITNECWKP*(+)
MIWSWMSDTRGETTNVTPLQMSAGSLNLAATFSQSILERQYMMPHSLL*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021