Plant Circular RNA Database

Detail information of Os01g0856500_circ_g.3

			
						 General Information
					
						CircRNA Name
						Os01g0856500_circ_g.3
					
						ID in PlantcircBase
						osa_circ_004867
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 36998987-37002769  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os01g0856500						
					
						Parent gene annotation
						
							Auxin transporter, Primary root and root hair elongation, Cd str
ess response (Os01t0856500-01);Amino acid transporter, transmemb
rane domain containing protein. (Os01t0856500-02);Splicing varia
nt with unknown function (Os01t0856500-03);Similar to auxin tran
sporter-like protein 1. (Os01t0856500-04)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os01g0856500_circ_g.2 Os01g0856500_circ_g.4 Os01g0856500_circ_g.5 Os01g0856500_circ_g.6 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0856500-01:6
Os01t0856500-03:3
Os01t0856500-02:6
Os01t0856500-04:3

General Information
CircRNA Name	Os01g0856500_circ_g.3
ID in PlantcircBase	osa_circ_004867
Alias	NA
Organism	Oryza sativa
Position	chr1: 36998987-37002769 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os01g0856500
Parent gene annotation	Auxin transporter, Primary root and root hair elongation, Cd str ess response (Os01t0856500-01);Amino acid transporter, transmemb rane domain containing protein. (Os01t0856500-02);Splicing varia nt with unknown function (Os01t0856500-03);Similar to auxin tran sporter-like protein 1. (Os01t0856500-04)
Parent gene strand	+
Alternative splicing	Os01g0856500_circ_g.2 Os01g0856500_circ_g.4 Os01g0856500_circ_g.5 Os01g0856500_circ_g.6
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0856500-01:6 Os01t0856500-03:3 Os01t0856500-02:6 Os01t0856500-04:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CATCAACTCCGCCGTCGGCGCGCTCCTCGTCAGCTTCACCGTCTACATCATCCCGGCACTCGCC
CACATCCTCACCTACCGTACGGCCTCCGCGCGCATGctgacgacggggaagggcggcgtggtca
gcatggtgccgcgcgagcaggcggaggaggccatcgtggctgacagcaacggcaaggaggagga
ggtcgggg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1278
Transcript exons: 36998987-36999217,36999350-36999535,36999956-37000068,37
000245-37000428,37000540-37000637,37002304-37002769
CTGACGACGGGGAAGGGCGGCGTGGTCAGCATGGTGCCGCGCGAGCAGGCGGAGGAGGCCATCG
TGGCTGACAGCAACGGCAAGGAGGAGGAGGTCGGGGTGATGGGCGTCAGCGCCGGGGAGCACGG
CGCCGACGACCACCACGGCGGCGGCGGCAAGTTCAGCATGAAGAACCTGCTCTGGCACGGCGGC
TCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCTAACCAGGTCGCGCAGGTGCTCCTGACGCTGC
CGTACTCCTTCTCGCAGCTCGGGATGCTCTCGGGCGTGCTGCTGCAGCTGTTCTACGGTTTCAT
GGGCAGCTGGACCGCCTACCTAATCAGCGTCCTCTACGTCGAGTACCGCTCCCGCAAGGAGAAG
GAAGGCGTCAGCTTCAAGAACCACGTCATCCAGTGGTTCGAGGTGCTGGATGGGCTACTGGGCC
CGTACTGGAAGGCGGCCGGACTCGCCTTCAACTGCACGTTCCTCCTCTTCGGCTCCGTCATCCA
GCTGATCGCCTGCGCGAGTAACATCTACTACATCAACGACCGGCTGGACAAGCGGACGTGGACG
TACATCTTCGGCGCGTGCTGCGCCACCACGGTGTTCATCCCGTCGTTCCACAACTACCGGATCT
GGTCCTTCCTGGGCCTCGGCATGACCACCTATACCGCTTGGTACCTCGCCATCGCCGCCCTCCT
CAACGGCCAGGCCGAAGGCATCACCCACACCGGTCCAACCAAGCTGGTGCTGTACTTCACCGGC
GCCACCAACATCCTCTACACCTTCGGCGGCCACGCCGTCACAGTGGAGATCATGCACGCGATGT
GGAAACCGGCCAAGTTCAAGTACATCTACCTGCTGGCGACGCTGTACGTGTTCACGCTGACGCT
GCCGTCGGCGTCGGCCATGTACTGGGCGTTCGGGGACGAGCTGCTGACCCACTCCAACGCCTTC
TCGCTGCTGCCCAAGACCGGGTGGCGCGACGCGGCGGTGATACTGATGCTGATCCACCAGTTCA
TCACGTTCGGGTTCGCGTGCACGCCGCTCTACTTCGTGTGGGAGAAGGTGATCGGCATGCACGA
CACCAAGAGCATCTGCCTCAGGGCGCTCGCGCGGCTCCCCATCGTCGTCCCCATCTGGTTCCTC
GCCATCATCTTCCCCTTCTTCGGCCCCATCAACTCCGCCGTCGGCGCGCTCCTCGTCAGCTTCA
CCGTCTACATCATCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG
						
					

						Genomic sequence
						
							CTGACGACGGGGAAGGGCGGCGTGGTCAGCATGGTGCCGCGCGAGCAGGCGGAGGAGGCCATCG
TGGCTGACAGCAACGGCAAGGAGGAGGAGGTCGGGGTGATGGGCGTCAGCGCCGGGGAGCACGG
CGCCGACGACCACCACGGCGGCGGCGGCAAGTTCAGCATGAAGAACCTGCTCTGGCACGGCGGC
TCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCTAACCAGGTATAACTCATCCTGCTCCGCCATG
GCCGCCATCGCGGCCATGCAGCTCGCTCGATGAAGGAATCATATCGAGACGAATCCGAAAGGCA
GCGTGACTGAATTTCTGAATTTCCTGGTGGTGGGTTTCTGCAGGTCGCGCAGGTGCTCCTGACG
CTGCCGTACTCCTTCTCGCAGCTCGGGATGCTCTCGGGCGTGCTGCTGCAGCTGTTCTACGGTT
TCATGGGCAGCTGGACCGCCTACCTAATCAGCGTCCTCTACGTCGAGTACCGCTCCCGCAAGGA
GAAGGAAGGCGTCAGCTTCAAGAACCACGTCATCCAGGTACCCGCCCCGCCTTGTCATGCCATG
GCCGTGCTGGCCTTGTCGCTTCTTCGTATCCTCCTCCTCATCAGTAACGGATTGTTACAGCTTC
TTATCCCCGTCTTTATGTGGCATAATCGAAAACACATTTTTCTCGAGCACGCATTTTTTCCCCT
TCCGTTTGGTCGTTTTCGATCCTTACTGGCTTGAAAAATGCCTCCTTTTCTTTTGTGAAAATGG
CAGGGGGTATTGGATCCCCTGCCTCCCATGGCTCTCTTCTGGTTGCTTGCCGAAATGAAAGCCG
AGCCTGAATCGAGCTCATCCTTAATCCTTGTTCAATTAATCACTTATTACTGCAAATTTTGCAT
AACTACACAACTATAGTTACTATACTAACAACTGGGGCTAATGGGAGAAGCTTGTGACGTTGAC
TGGTGGCAGTGGTTCGAGGTGCTGGATGGGCTACTGGGCCCGTACTGGAAGGCGGCCGGACTCG
CCTTCAACTGCACGTTCCTCCTCTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGGTCAAA
TTCCTTTCCTCCCCAACTCAACCAACCAACCATCACTCTCCCACTGTCACTTCGCAGCGCCAGT
GTAAATATGTAGCCGTGCTGCTGCGCAACAGTGTGTCGTGGTGACAGATTGGGTTTGTGCGGAT
GGGCTGAAAACCTGACCGATAATTTGGTGGTGTTTTCTTCAGTAACATCTACTACATCAACGAC
CGGCTGGACAAGCGGACGTGGACGTACATCTTCGGCGCGTGCTGCGCCACCACGGTGTTCATCC
CGTCGTTCCACAACTACCGGATCTGGTCCTTCCTGGGCCTCGGCATGACCACCTATACCGCTTG
GTACCTCGCCATCGCCGCCCTCCTCAACGGCCAGGTGAGATAAGAAGAGGGAAACTGTCCTTGT
CACTTTCTCGATCATCCATCGCGTCTACTACATGTCCATTTAGCTTGGGTTTGCAGTGACTGAT
GATCGTTTGCGTCGCAGGCCGAAGGCATCACCCACACCGGTCCAACCAAGCTGGTGCTGTACTT
CACCGGCGCCACCAACATCCTCTACACCTTCGGCGGCCACGCCGTCACAGTGTAAGCAAAGCAG
AACTTGCTCTGTTTGTCCAGTTGTTAATACTGTACAGTAGTATTAGTACTAGGACTACAAGCTA
ATCCTCCTGAGGAAGTGAAGTGAGGGAGAACTTTTCACTAGCTGCAGCTTTTGCCTGCCAATGT
GGAGGACATGTCCCGATTGGAAATCAGGTTCTGGTTTCCATTCCATTGGTCCCCCTCCATGGTA
CTGGTACTCGCACCTCACTGGTCACAGTGTAGTATAGTGAGTACTACTACTACTACTAAGCTTA
ATTAAAACACACGTAGCTGTAGCTTTGCAGCTAGTTAGCTCTATGGCGTACAGATCCCAATGGA
TGGATAGGGGCACTTAAAAATTCCAAGCCTGTGCGCGGTGGGAAACAGCTGCGTTAGCTTGCGA
CCATTAGTCGGCTGATCGATTGATATCGGTCGATAAAAATTTATAAAGATCGATCCAGCTGCTA
AAGCTCGGTGCGTTCATGTGCATGTGCGATGTGCTGAACTGGTGATGCATCCAAAAGGTCCCCT
GCTAGTACACGCGATGGTTTAGGGGAGAAAAGAATGGGCCACTATGCATTAGAATAGACTCCTT
GAGCCCCTTTATTCCCATTGCTCGTTTATGTGCCTAATCTATTGCTTGGATTATTGAGTGTGTT
TTTGCTTTGGCATGATTAGAGGCCCATGCGAGGAATAATTAGCGTTTCAGTGCGCTGTTCCTTC
AAAATGCGATGGTCGTTAGTGCCTTAGTGGTCGCATGCAGTTCGGATTGGAGATTTGATGATCT
TATAGTAGTATATATAGTATCTCCTAGCTTCAAAAATTTAATGTAGTGCTACCAGTACTTGTTC
CATAGTTGTGAAAATTGAAAATGCTTTTGATGGGTTGGAAATGGAATGGAATGATAAGGGGGGC
CAGCTTCATTCAATTCAGCTAGTGCGGAGTTCACATCAAGCTATGCAATTCCGTGCTAGTTGCC
CTAATCCAACGGGGTGAAATGATTTCCATCATGGATTGGGACATCTTGGTGCCAAATCATCCAA
TGATGATTCCATTTATATCTTACTACTACTATTATGCTGCTAGGCTTGCATGGGAAAGTTTAGC
TTAGTGGGGCGAAGGGGACACAGACCTGCTTTGAGAATTGCTTCCCAATTGAAGAATGTGAGTG
TCTTTGTCCATCTTGACAATGCCCCTCACCACTTCTGGTCTCAGGCTAATTCAAAGCCCAGTTT
GGTAGCGACATGAGACCATTAGCATAACATGCATGGGATGGGATCTTCGCTAGCTGTGGAGCAG
AGTTTTTAGGTGATTAGTACTCGTATTTAGTGGTATAAATTATTATTGGCAACGGCCTTATTTG
GCCGTATTTGTCGGCTCCTCCATCATTTGACCGGTGGCGGATACATGTGTTGGTGAAAGAAAGA
AAGCAATTGCGAGATTCCCCCTGCCGCCGCGATCCTTGCATGTATCCTGCCTGCGTGACTAGGA
GAAGCAGCAGCTGTAGTAGTAGTCCTACTTTTTGGCCGTATCATTTGATCAAGCTGATTAAAGT
CTCAGCATCATTGACTCGCATGTGCCGAGGCCGTTTTGTCCGTTGATTTGTTGATTAATAACCT
GCAAGAAAAGAAAATAATGACTGATTGGGGGTGGCTGTTTTGGATTGGTGCAGGGAGATCATGC
ACGCGATGTGGAAACCGGCCAAGTTCAAGTACATCTACCTGCTGGCGACGCTGTACGTGTTCAC
GCTGACGCTGCCGTCGGCGTCGGCCATGTACTGGGCGTTCGGGGACGAGCTGCTGACCCACTCC
AACGCCTTCTCGCTGCTGCCCAAGACCGGGTGGCGCGACGCGGCGGTGATACTGATGCTGATCC
ACCAGTTCATCACGTTCGGGTTCGCGTGCACGCCGCTCTACTTCGTGTGGGAGAAGGTGATCGG
CATGCACGACACCAAGAGCATCTGCCTCAGGGCGCTCGCGCGGCTCCCCATCGTCGTCCCCATC
TGGTTCCTCGCCATCATCTTCCCCTTCTTCGGCCCCATCAACTCCGCCGTCGGCGCGCTCCTCG
TCAGCTTCACCGTCTACATCATCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGC
GCGCATG
						
					

			
		

Sequences
Splice junction sequence	CATCAACTCCGCCGTCGGCGCGCTCCTCGTCAGCTTCACCGTCTACATCATCCCGGCACTCGCC CACATCCTCACCTACCGTACGGCCTCCGCGCGCATGctgacgacggggaagggcggcgtggtca gcatggtgccgcgcgagcaggcggaggaggccatcgtggctgacagcaacggcaaggaggagga ggtcgggg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1278 Transcript exons: 36998987-36999217,36999350-36999535,36999956-37000068,37 000245-37000428,37000540-37000637,37002304-37002769 CTGACGACGGGGAAGGGCGGCGTGGTCAGCATGGTGCCGCGCGAGCAGGCGGAGGAGGCCATCG TGGCTGACAGCAACGGCAAGGAGGAGGAGGTCGGGGTGATGGGCGTCAGCGCCGGGGAGCACGG CGCCGACGACCACCACGGCGGCGGCGGCAAGTTCAGCATGAAGAACCTGCTCTGGCACGGCGGC TCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCTAACCAGGTCGCGCAGGTGCTCCTGACGCTGC CGTACTCCTTCTCGCAGCTCGGGATGCTCTCGGGCGTGCTGCTGCAGCTGTTCTACGGTTTCAT GGGCAGCTGGACCGCCTACCTAATCAGCGTCCTCTACGTCGAGTACCGCTCCCGCAAGGAGAAG GAAGGCGTCAGCTTCAAGAACCACGTCATCCAGTGGTTCGAGGTGCTGGATGGGCTACTGGGCC CGTACTGGAAGGCGGCCGGACTCGCCTTCAACTGCACGTTCCTCCTCTTCGGCTCCGTCATCCA GCTGATCGCCTGCGCGAGTAACATCTACTACATCAACGACCGGCTGGACAAGCGGACGTGGACG TACATCTTCGGCGCGTGCTGCGCCACCACGGTGTTCATCCCGTCGTTCCACAACTACCGGATCT GGTCCTTCCTGGGCCTCGGCATGACCACCTATACCGCTTGGTACCTCGCCATCGCCGCCCTCCT CAACGGCCAGGCCGAAGGCATCACCCACACCGGTCCAACCAAGCTGGTGCTGTACTTCACCGGC GCCACCAACATCCTCTACACCTTCGGCGGCCACGCCGTCACAGTGGAGATCATGCACGCGATGT GGAAACCGGCCAAGTTCAAGTACATCTACCTGCTGGCGACGCTGTACGTGTTCACGCTGACGCT GCCGTCGGCGTCGGCCATGTACTGGGCGTTCGGGGACGAGCTGCTGACCCACTCCAACGCCTTC TCGCTGCTGCCCAAGACCGGGTGGCGCGACGCGGCGGTGATACTGATGCTGATCCACCAGTTCA TCACGTTCGGGTTCGCGTGCACGCCGCTCTACTTCGTGTGGGAGAAGGTGATCGGCATGCACGA CACCAAGAGCATCTGCCTCAGGGCGCTCGCGCGGCTCCCCATCGTCGTCCCCATCTGGTTCCTC GCCATCATCTTCCCCTTCTTCGGCCCCATCAACTCCGCCGTCGGCGCGCTCCTCGTCAGCTTCA CCGTCTACATCATCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG
Genomic sequence	CTGACGACGGGGAAGGGCGGCGTGGTCAGCATGGTGCCGCGCGAGCAGGCGGAGGAGGCCATCG TGGCTGACAGCAACGGCAAGGAGGAGGAGGTCGGGGTGATGGGCGTCAGCGCCGGGGAGCACGG CGCCGACGACCACCACGGCGGCGGCGGCAAGTTCAGCATGAAGAACCTGCTCTGGCACGGCGGC TCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCTAACCAGGTATAACTCATCCTGCTCCGCCATG GCCGCCATCGCGGCCATGCAGCTCGCTCGATGAAGGAATCATATCGAGACGAATCCGAAAGGCA GCGTGACTGAATTTCTGAATTTCCTGGTGGTGGGTTTCTGCAGGTCGCGCAGGTGCTCCTGACG CTGCCGTACTCCTTCTCGCAGCTCGGGATGCTCTCGGGCGTGCTGCTGCAGCTGTTCTACGGTT TCATGGGCAGCTGGACCGCCTACCTAATCAGCGTCCTCTACGTCGAGTACCGCTCCCGCAAGGA GAAGGAAGGCGTCAGCTTCAAGAACCACGTCATCCAGGTACCCGCCCCGCCTTGTCATGCCATG GCCGTGCTGGCCTTGTCGCTTCTTCGTATCCTCCTCCTCATCAGTAACGGATTGTTACAGCTTC TTATCCCCGTCTTTATGTGGCATAATCGAAAACACATTTTTCTCGAGCACGCATTTTTTCCCCT TCCGTTTGGTCGTTTTCGATCCTTACTGGCTTGAAAAATGCCTCCTTTTCTTTTGTGAAAATGG CAGGGGGTATTGGATCCCCTGCCTCCCATGGCTCTCTTCTGGTTGCTTGCCGAAATGAAAGCCG AGCCTGAATCGAGCTCATCCTTAATCCTTGTTCAATTAATCACTTATTACTGCAAATTTTGCAT AACTACACAACTATAGTTACTATACTAACAACTGGGGCTAATGGGAGAAGCTTGTGACGTTGAC TGGTGGCAGTGGTTCGAGGTGCTGGATGGGCTACTGGGCCCGTACTGGAAGGCGGCCGGACTCG CCTTCAACTGCACGTTCCTCCTCTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGGTCAAA TTCCTTTCCTCCCCAACTCAACCAACCAACCATCACTCTCCCACTGTCACTTCGCAGCGCCAGT GTAAATATGTAGCCGTGCTGCTGCGCAACAGTGTGTCGTGGTGACAGATTGGGTTTGTGCGGAT GGGCTGAAAACCTGACCGATAATTTGGTGGTGTTTTCTTCAGTAACATCTACTACATCAACGAC CGGCTGGACAAGCGGACGTGGACGTACATCTTCGGCGCGTGCTGCGCCACCACGGTGTTCATCC CGTCGTTCCACAACTACCGGATCTGGTCCTTCCTGGGCCTCGGCATGACCACCTATACCGCTTG GTACCTCGCCATCGCCGCCCTCCTCAACGGCCAGGTGAGATAAGAAGAGGGAAACTGTCCTTGT CACTTTCTCGATCATCCATCGCGTCTACTACATGTCCATTTAGCTTGGGTTTGCAGTGACTGAT GATCGTTTGCGTCGCAGGCCGAAGGCATCACCCACACCGGTCCAACCAAGCTGGTGCTGTACTT CACCGGCGCCACCAACATCCTCTACACCTTCGGCGGCCACGCCGTCACAGTGTAAGCAAAGCAG AACTTGCTCTGTTTGTCCAGTTGTTAATACTGTACAGTAGTATTAGTACTAGGACTACAAGCTA ATCCTCCTGAGGAAGTGAAGTGAGGGAGAACTTTTCACTAGCTGCAGCTTTTGCCTGCCAATGT GGAGGACATGTCCCGATTGGAAATCAGGTTCTGGTTTCCATTCCATTGGTCCCCCTCCATGGTA CTGGTACTCGCACCTCACTGGTCACAGTGTAGTATAGTGAGTACTACTACTACTACTAAGCTTA ATTAAAACACACGTAGCTGTAGCTTTGCAGCTAGTTAGCTCTATGGCGTACAGATCCCAATGGA TGGATAGGGGCACTTAAAAATTCCAAGCCTGTGCGCGGTGGGAAACAGCTGCGTTAGCTTGCGA CCATTAGTCGGCTGATCGATTGATATCGGTCGATAAAAATTTATAAAGATCGATCCAGCTGCTA AAGCTCGGTGCGTTCATGTGCATGTGCGATGTGCTGAACTGGTGATGCATCCAAAAGGTCCCCT GCTAGTACACGCGATGGTTTAGGGGAGAAAAGAATGGGCCACTATGCATTAGAATAGACTCCTT GAGCCCCTTTATTCCCATTGCTCGTTTATGTGCCTAATCTATTGCTTGGATTATTGAGTGTGTT TTTGCTTTGGCATGATTAGAGGCCCATGCGAGGAATAATTAGCGTTTCAGTGCGCTGTTCCTTC AAAATGCGATGGTCGTTAGTGCCTTAGTGGTCGCATGCAGTTCGGATTGGAGATTTGATGATCT TATAGTAGTATATATAGTATCTCCTAGCTTCAAAAATTTAATGTAGTGCTACCAGTACTTGTTC CATAGTTGTGAAAATTGAAAATGCTTTTGATGGGTTGGAAATGGAATGGAATGATAAGGGGGGC CAGCTTCATTCAATTCAGCTAGTGCGGAGTTCACATCAAGCTATGCAATTCCGTGCTAGTTGCC CTAATCCAACGGGGTGAAATGATTTCCATCATGGATTGGGACATCTTGGTGCCAAATCATCCAA TGATGATTCCATTTATATCTTACTACTACTATTATGCTGCTAGGCTTGCATGGGAAAGTTTAGC TTAGTGGGGCGAAGGGGACACAGACCTGCTTTGAGAATTGCTTCCCAATTGAAGAATGTGAGTG TCTTTGTCCATCTTGACAATGCCCCTCACCACTTCTGGTCTCAGGCTAATTCAAAGCCCAGTTT GGTAGCGACATGAGACCATTAGCATAACATGCATGGGATGGGATCTTCGCTAGCTGTGGAGCAG AGTTTTTAGGTGATTAGTACTCGTATTTAGTGGTATAAATTATTATTGGCAACGGCCTTATTTG GCCGTATTTGTCGGCTCCTCCATCATTTGACCGGTGGCGGATACATGTGTTGGTGAAAGAAAGA AAGCAATTGCGAGATTCCCCCTGCCGCCGCGATCCTTGCATGTATCCTGCCTGCGTGACTAGGA GAAGCAGCAGCTGTAGTAGTAGTCCTACTTTTTGGCCGTATCATTTGATCAAGCTGATTAAAGT CTCAGCATCATTGACTCGCATGTGCCGAGGCCGTTTTGTCCGTTGATTTGTTGATTAATAACCT GCAAGAAAAGAAAATAATGACTGATTGGGGGTGGCTGTTTTGGATTGGTGCAGGGAGATCATGC ACGCGATGTGGAAACCGGCCAAGTTCAAGTACATCTACCTGCTGGCGACGCTGTACGTGTTCAC GCTGACGCTGCCGTCGGCGTCGGCCATGTACTGGGCGTTCGGGGACGAGCTGCTGACCCACTCC AACGCCTTCTCGCTGCTGCCCAAGACCGGGTGGCGCGACGCGGCGGTGATACTGATGCTGATCC ACCAGTTCATCACGTTCGGGTTCGCGTGCACGCCGCTCTACTTCGTGTGGGAGAAGGTGATCGG CATGCACGACACCAAGAGCATCTGCCTCAGGGCGCTCGCGCGGCTCCCCATCGTCGTCCCCATC TGGTTCCTCGCCATCATCTTCCCCTTCTTCGGCCCCATCAACTCCGCCGTCGGCGCGCTCCTCG TCAGCTTCACCGTCTACATCATCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGC GCGCATG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.341852195

Conservation Information
Conserved circRNAs	NA
PMCS	0.341852195

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							36999018-37002766(+)
36999155-37002747(-)
						
					

						Potential amino acid sequence
						
							MVPREQAEEAIVADSNGKEEEVGVMGVSAGEHGADDHHGGGGKFSMKNLLWHGGSVWDAWFSCA
SNQVAQVLLTLPYSFSQLGMLSGVLLQLFYGFMGSWTAYLISVLYVEYRSRKEKEGVSFKNHVI
QWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATT
VFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALLNGQAEGITHTGPTKLVLYFTGATNILYTFGG
HAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPSASAMYWAFGDELLTHSNAFSLLPKTGWRD
AAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPIVVPIWFLAIIFPFFGPI
NSAVGALLVSFTVYIIPALAHILTYRTASARMLTTGKGGVVSMVPREQAEEAIVADSNGKEEEV
GVMGVSAGEHGADDHHGGGGKFSMKNLLWHGGSVWDAWFSCASNQVAQVLLTLPYSFSQLGMLS
GVLLQLFYGFMGSWTAYLISVLYVEYRSRKEKEGVSFKNHVIQWFEVLDGLLGPYWKAAGLAFN
CTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTY
TAWYLAIAALLNGQAEGITHTGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYL
LATLYVFTLTLPSASAMYWAFGDELLTHSNAFSLLPKTGWRDAAVILMLIHQFITFGFACTPLY
FVWEKVIGMHDTKSICLRALARLPIVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHI
LTYRTASARMLTTGKGGVVSMVPREQAEEAIVADSNGKEEEVGVMGVSAGEHGADDHHGGGGKF
SMKNLLWHGGSVWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGVLLQLFYGFMGSWTAYLISVL
YVEYRSRKEKEGVSFKNHVIQWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYI
NDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALLNGQAEGITHTG
PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPSASAMYWAFG
DELLTHSNAFSLLPKTGWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALAR
LPIVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHILTYRTASARMLTTGKGGVVSMV
PREQAEEAIVADSNGKEEEVGVMGVSAGEHGADDHHGGGGKFSMKNLLWHGGSVWDAWFSCASN
QVAQVLLTLPYSFSQLGMLSGVLLQLFYGFMGSWTAYLISVLYVEYRSRKEKEGVSFKNHVIQW
FEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVF
IPSFHNYRIWSFLGLGMTTYTAWYLAIAALLNGQAEGITHTGPTKLVLYFTGATNILYTFGGHA
VTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPSASAMYWAFGDELLTHSNAFSLLPKTGWRDAA
VILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPIVVPIWFLAIIFPFFGPINS
AVGALLVSFTVYIIPALAHILTYRTASARM(+)
MLNLPPPPWWSSAPCSPALTPITPTSSSLPLLSATMASSACSRGTMLTTPPFPVVSMRAEAVR*
(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	36999018-37002766(+) 36999155-37002747(-)
Potential amino acid sequence	MVPREQAEEAIVADSNGKEEEVGVMGVSAGEHGADDHHGGGGKFSMKNLLWHGGSVWDAWFSCA SNQVAQVLLTLPYSFSQLGMLSGVLLQLFYGFMGSWTAYLISVLYVEYRSRKEKEGVSFKNHVI QWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATT VFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALLNGQAEGITHTGPTKLVLYFTGATNILYTFGG HAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPSASAMYWAFGDELLTHSNAFSLLPKTGWRD AAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPIVVPIWFLAIIFPFFGPI NSAVGALLVSFTVYIIPALAHILTYRTASARMLTTGKGGVVSMVPREQAEEAIVADSNGKEEEV GVMGVSAGEHGADDHHGGGGKFSMKNLLWHGGSVWDAWFSCASNQVAQVLLTLPYSFSQLGMLS GVLLQLFYGFMGSWTAYLISVLYVEYRSRKEKEGVSFKNHVIQWFEVLDGLLGPYWKAAGLAFN CTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTY TAWYLAIAALLNGQAEGITHTGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYL LATLYVFTLTLPSASAMYWAFGDELLTHSNAFSLLPKTGWRDAAVILMLIHQFITFGFACTPLY FVWEKVIGMHDTKSICLRALARLPIVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHI LTYRTASARMLTTGKGGVVSMVPREQAEEAIVADSNGKEEEVGVMGVSAGEHGADDHHGGGGKF SMKNLLWHGGSVWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGVLLQLFYGFMGSWTAYLISVL YVEYRSRKEKEGVSFKNHVIQWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYI NDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALLNGQAEGITHTG PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPSASAMYWAFG DELLTHSNAFSLLPKTGWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALAR LPIVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHILTYRTASARMLTTGKGGVVSMV PREQAEEAIVADSNGKEEEVGVMGVSAGEHGADDHHGGGGKFSMKNLLWHGGSVWDAWFSCASN QVAQVLLTLPYSFSQLGMLSGVLLQLFYGFMGSWTAYLISVLYVEYRSRKEKEGVSFKNHVIQW FEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVF IPSFHNYRIWSFLGLGMTTYTAWYLAIAALLNGQAEGITHTGPTKLVLYFTGATNILYTFGGHA VTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPSASAMYWAFGDELLTHSNAFSLLPKTGWRDAA VILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPIVVPIWFLAIIFPFFGPINS AVGALLVSFTVYIIPALAHILTYRTASARM(+) MLNLPPPPWWSSAPCSPALTPITPTSSSLPLLSATMASSACSRGTMLTTPPFPVVSMRAEAVR* (-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os01g0856500_circ_g.3

Address

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