Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os09g0286400_circ_g.5 |
| ID in PlantcircBase | osa_circ_038735 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr9: 6377226-6381084 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | PcircRNA_finder |
| Parent gene | Os09g0286400 |
| Parent gene annotation |
Sodium/hydrogen exchanger subfamily protein. (Os09t0286400-01) |
| Parent gene strand | - |
| Alternative splicing | Os09g0286400_circ_g.4 Os09g0286400_circ_g.6 Os09g0286400_circ_g.7 Os09g0286400_circ_g.8 Os09g0286400_circ_g.9 Os09g0286400_circ_g.10 Os09g0286400_circ_g.11 Os09g0286400_circ_g.12 |
| Support reads | 3 |
| Tissues | seed |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AC |
| Number of exons covered | Os09t0286400-01:12 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.22037817 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
6380927-6377228(+) 6380797-6380775(-) 6377253-6380775(-) |
| Potential amino acid sequence |
MNVPRMAKVTIAPKFAKNGFGDRLNPDWN*(+) MYKLPFVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSLVRS QAAAGENFFMMVFQFLETFVGSLSSGVGVGFISALLFKYAGLDIDNLQNLECCLFVLFPYFSYM LAEGLGLSGIVSILFTGMVMKHYTFSNLSNNSQRFVSAFFHLLSSLAETFVFIYMGFDIAMEEH SWSHVGFIFFSIPIRIQSIPKTILCKFWGYCNFCHPWDIHCFCCNRSSRLSWWVDISNVQTSIC *(-) MWASYSSQFQSGFSLSPKPFFANFGAIVTFAILGTFIASVVTGVLVYLGGLTFLMYKLPFVECL MFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSLVRSQAAAGENFFM MVFQFLETFVGSLSSGVGVGFISALLFKYAGLDIDNLQNLECCLFVLFPYFSYMLAEGLGLSGI VSILFTGMVMKHYTFSNLSNNSQRFVSAFFHLLSSLAETFVFIYMGFDIAMEEHSWSHVGFIFF SIPIRIQSIPKTILCKFWGYCNFCHPWDIHCFCCNRSSRLSWWVDISNVQTSIC*(-) |
| Sponge-miRNAs | osa-miR5498 |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |