Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os09g0286400_circ_g.5 |
ID in PlantcircBase | osa_circ_038735 |
Alias | NA |
Organism | Oryza sativa |
Position | chr9: 6377226-6381084 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | Os09g0286400 |
Parent gene annotation |
Sodium/hydrogen exchanger subfamily protein. (Os09t0286400-01) |
Parent gene strand | - |
Alternative splicing | Os09g0286400_circ_g.4 Os09g0286400_circ_g.6 Os09g0286400_circ_g.7 Os09g0286400_circ_g.8 Os09g0286400_circ_g.9 Os09g0286400_circ_g.10 Os09g0286400_circ_g.11 Os09g0286400_circ_g.12 |
Support reads | 3 |
Tissues | seed |
Exon boundary | Yes-Yes |
Splicing signals | GT-AC |
Number of exons covered | Os09t0286400-01:12 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.22037817 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6380927-6377228(+) 6380797-6380775(-) 6377253-6380775(-) |
Potential amino acid sequence |
MNVPRMAKVTIAPKFAKNGFGDRLNPDWN*(+) MYKLPFVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSLVRS QAAAGENFFMMVFQFLETFVGSLSSGVGVGFISALLFKYAGLDIDNLQNLECCLFVLFPYFSYM LAEGLGLSGIVSILFTGMVMKHYTFSNLSNNSQRFVSAFFHLLSSLAETFVFIYMGFDIAMEEH SWSHVGFIFFSIPIRIQSIPKTILCKFWGYCNFCHPWDIHCFCCNRSSRLSWWVDISNVQTSIC *(-) MWASYSSQFQSGFSLSPKPFFANFGAIVTFAILGTFIASVVTGVLVYLGGLTFLMYKLPFVECL MFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSLVRSQAAAGENFFM MVFQFLETFVGSLSSGVGVGFISALLFKYAGLDIDNLQNLECCLFVLFPYFSYMLAEGLGLSGI VSILFTGMVMKHYTFSNLSNNSQRFVSAFFHLLSSLAETFVFIYMGFDIAMEEHSWSHVGFIFF SIPIRIQSIPKTILCKFWGYCNFCHPWDIHCFCCNRSSRLSWWVDISNVQTSIC*(-) |
Sponge-miRNAs | osa-miR5498 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |