Detail information of Os09g0286400_circ_g.5


General Information
CircRNA Name Os09g0286400_circ_g.5
ID in PlantcircBase osa_circ_038735
Alias NA
Organism Oryza sativa
Position chr9: 6377226-6381084  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene Os09g0286400
Parent gene annotation Sodium/hydrogen exchanger subfamily protein. (Os09t0286400-01)
Parent gene strand -
Alternative splicing Os09g0286400_circ_g.4 Os09g0286400_circ_g.6 Os09g0286400_circ_g.7 Os09g0286400_circ_g.8 Os09g0286400_circ_g.9 Os09g0286400_circ_g.10 Os09g0286400_circ_g.11 Os09g0286400_circ_g.12
Support reads 3
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   GT-AC
Number of exons covered Os09t0286400-01:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGTAAAAAAATATATTATTATTTCAAGGAAAGAAGTCTAGACAATTTGAATTATTGCCATCAT
GAGGTACTTACTGGGGATAGACTGAATCCTGATTGGaattgagaagaatatgaagcccacatga
gaccagctatgttcttccatggcaatatcaaagcccatataaatgaacctgaaaaatgaattca
ggaattgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATTGAGAAGAATATGAAGCCCACATGAGACCAGCTATGTTCTTCCATGGCAATATCAAAGCCC
ATATAAATGAACCTGAAAAATGAATTCAGGAATTGTCCATTAAGAGCAAAAGGGAATGGTTGTT
TTTATATTACTCAAACAAAGCTCCTGAGCTTACACAAATGTTTCTGCTAAAGATGACAGCAAGT
GAAAGAAGGCAGAAACGAAGCGCTGAGAGTTGTTTGAGAGATTGGAAAATGTATAGTGCTTCAT
AACCTGAGAAAAAAAAATAGCAAGTATGATTCCAAGAGACATAGCCATGGTGTGCAGATATGGT
TTTTCATATAATATGCTATTTTGCAATATTGCATATTGTACTTACCATTCCTGTGAATAGTATG
GAAACAATTCCTGACAACCCAAGTCCTTCTGCTAACATATACCTAGAATTGATACGAAATATTT
TAATAAAAAAAGTATAGAAGAAGGGTAGAGTGAAGTATTTAAGTGTCCTTACGAGAAGTATGGG
AAGAGAACAAAAAGGCAGCACTCCAAGTTTTGAAGACTGAAACCGTTAACAATTCAGCAGGCTT
AGACTGGCAACATATTTCGTATGAAATCATGAAAAAGTCTATGAACTAAAAGCAGGTAGCATGA
TATGACTTACTTGTCAATATCCAGTCCAGCATACTTAAACAGGTACACAGAGTGGTCAAGGTTG
CACAAGATCAAGTAGTAAATAAAATAATTTACCGTAAAACAAGCAATGAGTAAATGGTAAATAG
TAATACATAAATATTGCAATTTAACACTATTACAAAGAAAAAAATAATGCATTTTACACAAAGC
TATAAGGAGCCAAGGACTGATAACACAACTGCCACTAAAAAGCATATGAAGATTTAGCTAACAT
TCAATAAGAGCAATGGAAAACATGACCATAAGAAGAAAATGAATATTGCAATTTAGATTCTACC
ATGTTTTCTTTGTTGCTGCTAATCTAAGAGAAGAACATTTCTTGTGAAAGTTGTTTAAAGAGGA
AGATTTTGAATTGGTATATGAAGATAAGATTAAACACACACTGGTCAATACTAAGCATGCATAG
TCTTTCATGTTTTGCAAACAGAGTTTCCATGTAGAACTTAGGAAAAGGATATAAGAGCAGAGAT
AAATCCAACTCCAACACCTGCAATCCGACAAATGGAATGGTTACATGAGCTAATGAATTGACAA
TGACTATGAAAGGGACTAGATCAGTTCGAATTAGTGATGGAGAATATATCGTTGTCCAGAAAAT
TTCAACCCCGAGTAAAAGCAGGTACATATTTTCCGGGCATCTACGGTATAAAACTAAATTTTGG
TATTTGATCATCAGAGTCTAGTTCCTCAAAAGGGAGAACGTTTATGACTAAACTTGCTAGAGCA
TTTTTGCTAACATGAAGGGGTAGCATATTATATAAGATCCAGCCATTAATACTGTGCCCTGCTG
TGCTGTTATGTACCATACATTAAAACATTGTTTTTACCTATTCTAGTAAAATAATTCTTATATT
GCTCTAAAATATATGATGTTCATTAGCTTGCATCAAACAGAACCAATTTTAGAAGGCAACCACA
ATGCCAAAGGTCCCTTTGAAATAGTTGAGAATATTCTGAGCTGTGATGCAACCTGATGACAATG
AACCAACAAAGGTCTCAAGGAACTGGAAAACCATCATAAAGAAGTTCTCCCCAGCTGCTGCTTG
ACTTCTGACCAATGACATTGTCCTGAACAAAAGGATAGATATAAGCAAGAAATGCATATGTCAA
AAGAATTATATGTAATTGAAAGAGACAGACCTGTAAAGCGAAATCGCCATCTGCACTATCCAAA
TAAGATATGCATGTTAGTCATAAACAAAAGTAATTACTACTATTGCATGCACTCGAAAGAAGTA
AAAACAAACCGCATCATTTAGAACAGATTCTCCAAACACAAGAGCATACAAGTTAACATCAGTG
CCCAGCTCCTGCATGGAATAATTTCAGGAGATGCATCATTAGTTCAGATTCCCAACATCCATAT
GGCCACTAATCCTCCAACATTTTTTAATATGCCATATTTAAACAATGGAACATCTTTAAAAAAA
ACATTGGCTAAGGACATATATCAAAGTACATAAAAAATAATAATAATGGCTGCATGCACTGATT
CAGTATGTTACACTAAATATACAGTAACTTTACCACCACAAACTTCTGTTGTAAATTCTGATGG
TGCATCAAAATCTAGTAGTAATGATCTGTTTTCAAGTTCAAGCCAAATGCTACCAAAAATATGG
TACAACACTGAAACTACAACAAAACAGTGTTACGAGTTTAGCACATTTTTTATCAATTACCTGG
GCATTAGGATAATATTTGCTTTCAGAATGTTTCATATTCATTTAGCATTGCAACCAGGTTTCTA
TTTTACATTTACTTACATAAACAATCATTTGCCTCTAAAAGTGGGGTTCCATGTATAGTACTGA
GAGTCTATGGTATGCTTCACTAGTAGCAATATAAAGAAATGAAGATGATGCGTCTTTCAAGAAT
GAGAACACAACAATTTTAAAACATCAAACAACAGAGACAACTTCTGATTTATTGACTGCTTACA
ACCTCATTAAAATTTTCTTTTTGTATTAGACAACATCATGTAATATAGAAATCATAATGCAACA
GCGAAGTTCAAACAAAAATCTGTTCACAAGAGTGTATCAATATGTGCTGTTTCCTAGCCCTGCT
GGTGCATTAATACTTAGGCCCTGTTCTTTTCAGACTATCCACCGGATTATTTGCTCCACGCTTC
TAAAACTATGTTTTCTCAAAAAAAAAAAAAATCTTCTACTGCATTGCTTCCTTGGACCACTTGT
TATAAGCTATTTGTTCAGTTTACGATATATAATATTTATTTTATCCCTATATTCAAGTAAATCA
TCCAGCAGCTTTCATCCACCAATCATCTACAGTCTTATTGTTTGGCCTATATCTGATAAGCCAT
AAAACGGCATAGAAGCAACCCAAAAGAAATTATGTGTAAACCGTTTATATCTGTGTTATTCGTA
GTTTAAAAGCCAATGCTCAAAAATAAAACATGATGAAGAAACCCCAAAATCAACTCCAAAATTA
AGTTTTAAAAATCAAATTTAGCAGTGGCTTATTATAAGCTGAAAATCAAATGATGGATTTGCTA
ATTCAAACGGTACCTTAGTCATCTTGCTAGTTAGGCATGTTTCCCTATAGATGTAGTACATGGT
TTAGGATAGGTTTCCTGAGATAAGAGGTTTACTCATATTGGTAAAGTGTGTATGTGTATGTGTG
CAGTTTCGTGCATGAAAAATTTAAGCATCTCATACAAAGTTTTCTTCCCAATCTATATCTATAT
GATATCCTAATCACCTTCTAGCCATGCAAGGCAGTTACGTGAATTATAAGTACACATGTCCAAG
AACGAGATACGTGAAAAAAATAAGCACCTGGAATATTGATAACACAGTGACAGGATCAGTTGCA
GATATAAGAGCACCGAACATGAGGCACTCAACAAATGGAAGTTTGTACATTAGAAATGTCAACC
CACCAAGATAGCTGCAGTATGATAGAGGTTGACTAGTAAGATAAAATACTTCAGACAGAATTAG
AACAAAAAGTTTGTGAAATTCTTACACGAGAACTCCTGTTACAACAGAAGCAATGAATGTCCCA
AGGATGGCAAAAGTTACAATAGCCCCAAAATTTGCAAAGAATGGTTTCTGTAAAAAAATATATT
ATTATTTCAAGGAAAGAAGTCTAGACAATTTGAATTATTGCCATCATGAGGTACTTACTGGGGA
TAGACTGAATCCTGATTGG
Conservation Information
Conserved circRNAs NA
PMCS 0.22037817
Functional Information
Coding potential Y
Potential coding position 6380927-6377228(+)
6380797-6380775(-)
6377253-6380775(-)
Potential amino acid sequence MNVPRMAKVTIAPKFAKNGFGDRLNPDWN*(+)
MYKLPFVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSLVRS
QAAAGENFFMMVFQFLETFVGSLSSGVGVGFISALLFKYAGLDIDNLQNLECCLFVLFPYFSYM
LAEGLGLSGIVSILFTGMVMKHYTFSNLSNNSQRFVSAFFHLLSSLAETFVFIYMGFDIAMEEH
SWSHVGFIFFSIPIRIQSIPKTILCKFWGYCNFCHPWDIHCFCCNRSSRLSWWVDISNVQTSIC
*(-)
MWASYSSQFQSGFSLSPKPFFANFGAIVTFAILGTFIASVVTGVLVYLGGLTFLMYKLPFVECL
MFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSLVRSQAAAGENFFM
MVFQFLETFVGSLSSGVGVGFISALLFKYAGLDIDNLQNLECCLFVLFPYFSYMLAEGLGLSGI
VSILFTGMVMKHYTFSNLSNNSQRFVSAFFHLLSSLAETFVFIYMGFDIAMEEHSWSHVGFIFF
SIPIRIQSIPKTILCKFWGYCNFCHPWDIHCFCCNRSSRLSWWVDISNVQTSIC*(-)
Sponge-miRNAs osa-miR5498
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017