Plant Circular RNA Database

Detail information of 5_circ_ag.9

			
						 General Information
					
						CircRNA Name
						5_circ_ag.9
					
						ID in PlantcircBase
						ath_circ_041451
					
						Alias
						Chr5:15377910|15381442
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 15377910-15381442  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						CIRCexplorer; CIRI
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							AT5G38410_circ_g.1 AT5G38410_circ_g.2 5_circ_ag.3 5_circ_ag.4 AT5G38410_circ_g.5 5_circ_ag.6 5_circ_ag.7 AT5G38410_circ_g.8 5_circ_ag.10 AT5G38410_circ_g.11 AT5G38410_circ_g.12 AT5G38410_circ_g.13 5_circ_ag.14 5_circ_ag.15 5_circ_ag.16 5_circ_ag.17 5_circ_ag.18 AT5G38410_circ_g.19 5_circ_ag.20 AT5G38410_circ_g.21 AT5G38410_circ_g.22 AT5G38410_circ_g.23 AT5G38410_circ_g.24 AT5G38410_circ_g.25 AT5G38410_circ_g.26 AT5G38410_circ_g.27 5_circ_ag.28 5_circ_ag.29 5_circ_ag.30 5_circ_ag.31 5_circ_ag.32 5_circ_ag.33 5_circ_ag.34 AT5G38410_circ_g.35 AT5G38410_circ_g.36 AT5G38410_circ_g.37 AT5G38410_circ_g.38 AT5G38410_circ_g.39 AT5G38420_circ_g.1 AT5G38420_circ_g.2 AT5G38420_circ_g.3 AT5G38420_circ_g.4 AT5G38420_circ_g.5 AT5G38420_circ_g.6 AT5G38420_circ_g.7 5_circ_ag.8 5_circ_ag.9 AT5G38420_circ_g.10 AT5G38420_circ_g.11 5_circ_ag.12 AT5G38420_circ_g.13 5_circ_ag.14 AT5G38430_circ_g.1 AT5G38430_circ_g.2 AT5G38430_circ_g.3 						
					
						Support reads
						7
					
						Tissues
						seedling
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-TA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	5_circ_ag.9
ID in PlantcircBase	ath_circ_041451
Alias	Chr5:15377910\|15381442
Organism	Arabidpsis thaliana
Position	chr5: 15377910-15381442 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	CIRCexplorer; CIRI
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	AT5G38410_circ_g.1 AT5G38410_circ_g.2 5_circ_ag.3 5_circ_ag.4 AT5G38410_circ_g.5 5_circ_ag.6 5_circ_ag.7 AT5G38410_circ_g.8 5_circ_ag.10 AT5G38410_circ_g.11 AT5G38410_circ_g.12 AT5G38410_circ_g.13 5_circ_ag.14 5_circ_ag.15 5_circ_ag.16 5_circ_ag.17 5_circ_ag.18 AT5G38410_circ_g.19 5_circ_ag.20 AT5G38410_circ_g.21 AT5G38410_circ_g.22 AT5G38410_circ_g.23 AT5G38410_circ_g.24 AT5G38410_circ_g.25 AT5G38410_circ_g.26 AT5G38410_circ_g.27 5_circ_ag.28 5_circ_ag.29 5_circ_ag.30 5_circ_ag.31 5_circ_ag.32 5_circ_ag.33 5_circ_ag.34 AT5G38410_circ_g.35 AT5G38410_circ_g.36 AT5G38410_circ_g.37 AT5G38410_circ_g.38 AT5G38410_circ_g.39 AT5G38420_circ_g.1 AT5G38420_circ_g.2 AT5G38420_circ_g.3 AT5G38420_circ_g.4 AT5G38420_circ_g.5 AT5G38420_circ_g.6 AT5G38420_circ_g.7 5_circ_ag.8 5_circ_ag.9 AT5G38420_circ_g.10 AT5G38420_circ_g.11 5_circ_ag.12 AT5G38420_circ_g.13 5_circ_ag.14 AT5G38430_circ_g.1 AT5G38430_circ_g.2 AT5G38430_circ_g.3
Support reads	7
Tissues	seedling
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-TA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CGGAGTCGGTGCATCCGAACAATGGAAGCTTCCACATTGTCCAGTATCGTCCATCATAGTATCC
GGGAGTGTTTCCGTGCTCACGGTACACAAATCCGTGcctctaactcgaattcaacacaaggaat
ccacttgttgcggagaaggtagtcaacttccttagccaattcgacgtcactaaggtcagggagg
taagatag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CCTCTAACTCGAATTCAACACAAGGAATCCACTTGTTGCGGAGAAGGTAGTCAACTTCCTTAGC
CAATTCGACGTCACTAAGGTCAGGGAGGTAAGATAGAGTCTCAAACTTCTTCTTTCCAATTGGT
GGCCACACCTATAATCCCCAAATCCAATTCCAAATTAATATATCCTATGTTTTGTTTTATTGCA
CATGACAAAAGACAGTTTTTATTGATGATATTACCTTCATGCAGCTAACTCTTCCCCCGTTGCT
TGCGATGGAAGTGATGTCCTTGTTGGTCTTGCGGGTGACCGGGAATGCAGCGGATGACTTCAAG
CCGGTGAATGGAGCGACCATGGTGGCCTGAGCCGGGGATGTAACCACAGCGGCGGAGGAGAGCA
TAGAGGAAGCCATTACTACTTCTTGTTGTTTCTCTTCTTCTTTTGCTCGTTTACTTACTGACTT
GTTTTCCTACTGGTGTTGTCATCTTTATATAATGAGAACCCCCTAAAGGCGAAAAGCCCTCATG
ATCAAAGGGTCCATGATTCATGATAACGTCGTTTACTGCCACAGGATTAAGGAAAGGTGTTGAC
ACCCTTATCGGTACGCACCACTAGGATAAGGCCACGTGGCAGAAAACTCCATTATCTTATCTTT
TCTCTTGTGGGGGAAATGAAGTGAATGTGCGGTTACTGGTCTCCACTTGATCGGTTGCTTTTGG
CTCCTTTCGTTTGGGAGAAAAGAAACCAGACGCATTACCTTAAATTTAATGCTTTTGGTCTTTT
GGACCTCTTATTTACCATGTATGATTTAATTTGGCTTAACACTTTCTTTGGAAATAAGGTCGCA
TTAAAAAATAGTTATAACAAAATTATTTAAATTTGATATTTACATAAATATATTGTATGATATT
TATCCGGACAAAAAAAAAAGCTTTAACCATCTCCAATATTTGTTTCTATTATTTTCTTTCTGAA
TATAGAGGAAAAAATATAATAGAGATTTATATTTTAACTTCAATGGTTCCTCAAAAATTCGTTA
GAAAAAATAAATAAGAGAAAAAATAAAAATCTCTATTTTTTGCTTTAGAAAAAAAATTAGAAAT
TTCTATTTTACAAATGAAAATAGAGATGAGTTAGAGTTAAATAAATACAAAAATAGAGTATATA
AATAAAAATAGAGATAGATTCGAGATGCTCTTAAAAATATTCATTACTCTTTCCGTTTTATTAA
TATCAATTGTTAAGATTTTTCAGGCAGACTTATAAATAAGATTCCATTTCAGACTAATGGAAGT
AAACCTATCAAAAGAATTCTAACGTGCTGTAGAGAGACTCCTTCGTCATCGTCCCTTTTGTGAA
AGAGTAAATTAAAGAATCCATAATGAGCATAGTGTAAGAAGAACCATTTATCTATTAGATATAT
TCTAGTACTGGTAGACTGTCGATTCTGGATACATCCTGAAAATCATTTACCACAATAAATTGTC
GATAATCTTTTTGTTGGAAAAGTTATATATTATCTTCAAATGATAATATATTAGTCGACAAAAG
AAAAGCGAGACAAAATTTGAATACATTGATTTCGGTTAATTCAATACTTTCACTTCATTTTTAG
CAAATAGTACTTTTATTTCTGATTTTTATGTGGCTAGGATAAAAGCAAAACCTTACTGGTTGGA
GAGAGTAAATATTTGAGTCGATACTAACAACAACTACATCATGCAAGATATGTTTGTGGGACAA
AGAGACCGAGCGAACAAACGAAACGGCAAAACCATCATCTACATGTATCAAGTGCGCGGTAAAC
CCCTCATGGAAGAATTTCCAAGAAAACCTCCCAAAGTCCATGGTATCTTCTATATGAGGTAATG
CACGCTGCCTCTAGATCAACAAGTAATATCAGCTCACGATTATCTTGCGACTCTGATCACATCA
CAATAACAATGGGGAACCCACATACGCAACCGTTCTCCTTGGAGTACCATGCCATTGCACTTAC
GGCCCCCTCAAGCACAAATATGGCACCTCAAGCTGATTTCCACCATGCAAACTTGAGTATGTAA
TCAAAGGTGTAGAACGGAGTCAAGAACTCATCTTAAAGTCACATAAAACTATGGTCATGCACTC
ATGGATCACGACTACTACCTTCAGGCTCACAAATTAATGCCCCCTTTTCAATCATATATATGAG
AAGAAACGTGTACAAAGTACACATTAACTGGTCACGAAAAAACTTTCGTGTAGGGAAAAGGATC
ACAAGGTCCACTCCACTCCGCACCTCAGCTAAATAAATCATTTTTCGAAAGTGAGATAGTCTTA
ACTCTTAAGTCTTAACCCATCCATCTAAGTTACTAGTTTCTGTCTTTTATAAGTCATTTTGTTT
CTTTTTCTTGGATTTTAATTGAAGCCAAAATGTGTGAATTAAATCCGGGAGATGGAAAAAATGT
TCGATAATTTGAATTATTATTTTTATATGTATTTTGTATTTGAATCATGAATTTTTTATATTTC
GTTTGCATAGAAGAATCCAAAAACATATGATTTTTTGTCAAAACAAAAACTTAAAACCAAACAT
ATAGTAGATGCGACGTTTTCATTATCATTTGGAATCTAGTTTTATTTAGAACTTTTTGGGAACG
TTAACTACTTTTCCTTCTAAATAACTGTTTCAGCTTTTAATGCATAACCAATGATCAAATTTAA
CGTAAACAAAATTTCCAAAATTTAGTAACTTCATGCTTGACAAATTTCAGTCTTTGTCGATCCT
TGCTTTATGTAATGCTATTTCTTGACTTAATATCCCACTTAGGGGTTTGGAATACATGTTTTAT
GTTTATAATTTTAAAAGATGCATTTGAATTTTCTGTATATACTACCTTTTCCAAATCTCCAATG
GCTATGTCATCTGAAAAATGGTTACACTCCCTTACATAAACTTTTCTCTAAATATCGAGGTTTG
ATTGATTGCTTTCATGTGCAAAATTTCTTAAAACAATGTAGCAAGTTTTTCTTTTTTTATTAGA
GTTTATTGGTTAGTCTAGGGAGTCAAAAGCAAGAATTATGAGGATAATTTAAAGGAGCCACAAT
GTTGTTTAAAGGAGCTAAACGAAAAATAAGATTTCAAAGATTTAAGGGCAAAAATGAAATGAAA
TGATAACTATAATTATAGAGAAACTGATAGGAATAACATTTTCACTTTCAAACAATAGTTCCTC
AACTGTTAAGTCGGCAAATAATTTCTTAAATTTGCATTGACCACATAGAAATGGGTTCCAGAAT
AATCAACGCTGAATATTCCAGAAAGGGGATTAAGCTTCGGTGAAGCTTGGGGGCTTGTAGGCAA
TGAAACTGATGCATTGGACTTGACGGGTGTTGTCGAATCCGATGATCCTAATGAAGGCGCCAGG
GTACTCCTTCTTGCATTCTTCAACTTCCTTCAACACTTGAGCGGAGTCGGTGCATCCGAACAAT
GGAAGCTTCCACATTGTCCAGTATCGTCCATCATAGTATCCGGGAGTGTTTCCGTGCTCACGGT
ACACAAATCCGTG
						
					

			
		

Sequences
Splice junction sequence	CGGAGTCGGTGCATCCGAACAATGGAAGCTTCCACATTGTCCAGTATCGTCCATCATAGTATCC GGGAGTGTTTCCGTGCTCACGGTACACAAATCCGTGcctctaactcgaattcaacacaaggaat ccacttgttgcggagaaggtagtcaacttccttagccaattcgacgtcactaaggtcagggagg taagatag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CCTCTAACTCGAATTCAACACAAGGAATCCACTTGTTGCGGAGAAGGTAGTCAACTTCCTTAGC CAATTCGACGTCACTAAGGTCAGGGAGGTAAGATAGAGTCTCAAACTTCTTCTTTCCAATTGGT GGCCACACCTATAATCCCCAAATCCAATTCCAAATTAATATATCCTATGTTTTGTTTTATTGCA CATGACAAAAGACAGTTTTTATTGATGATATTACCTTCATGCAGCTAACTCTTCCCCCGTTGCT TGCGATGGAAGTGATGTCCTTGTTGGTCTTGCGGGTGACCGGGAATGCAGCGGATGACTTCAAG CCGGTGAATGGAGCGACCATGGTGGCCTGAGCCGGGGATGTAACCACAGCGGCGGAGGAGAGCA TAGAGGAAGCCATTACTACTTCTTGTTGTTTCTCTTCTTCTTTTGCTCGTTTACTTACTGACTT GTTTTCCTACTGGTGTTGTCATCTTTATATAATGAGAACCCCCTAAAGGCGAAAAGCCCTCATG ATCAAAGGGTCCATGATTCATGATAACGTCGTTTACTGCCACAGGATTAAGGAAAGGTGTTGAC ACCCTTATCGGTACGCACCACTAGGATAAGGCCACGTGGCAGAAAACTCCATTATCTTATCTTT TCTCTTGTGGGGGAAATGAAGTGAATGTGCGGTTACTGGTCTCCACTTGATCGGTTGCTTTTGG CTCCTTTCGTTTGGGAGAAAAGAAACCAGACGCATTACCTTAAATTTAATGCTTTTGGTCTTTT GGACCTCTTATTTACCATGTATGATTTAATTTGGCTTAACACTTTCTTTGGAAATAAGGTCGCA TTAAAAAATAGTTATAACAAAATTATTTAAATTTGATATTTACATAAATATATTGTATGATATT TATCCGGACAAAAAAAAAAGCTTTAACCATCTCCAATATTTGTTTCTATTATTTTCTTTCTGAA TATAGAGGAAAAAATATAATAGAGATTTATATTTTAACTTCAATGGTTCCTCAAAAATTCGTTA GAAAAAATAAATAAGAGAAAAAATAAAAATCTCTATTTTTTGCTTTAGAAAAAAAATTAGAAAT TTCTATTTTACAAATGAAAATAGAGATGAGTTAGAGTTAAATAAATACAAAAATAGAGTATATA AATAAAAATAGAGATAGATTCGAGATGCTCTTAAAAATATTCATTACTCTTTCCGTTTTATTAA TATCAATTGTTAAGATTTTTCAGGCAGACTTATAAATAAGATTCCATTTCAGACTAATGGAAGT AAACCTATCAAAAGAATTCTAACGTGCTGTAGAGAGACTCCTTCGTCATCGTCCCTTTTGTGAA AGAGTAAATTAAAGAATCCATAATGAGCATAGTGTAAGAAGAACCATTTATCTATTAGATATAT TCTAGTACTGGTAGACTGTCGATTCTGGATACATCCTGAAAATCATTTACCACAATAAATTGTC GATAATCTTTTTGTTGGAAAAGTTATATATTATCTTCAAATGATAATATATTAGTCGACAAAAG AAAAGCGAGACAAAATTTGAATACATTGATTTCGGTTAATTCAATACTTTCACTTCATTTTTAG CAAATAGTACTTTTATTTCTGATTTTTATGTGGCTAGGATAAAAGCAAAACCTTACTGGTTGGA GAGAGTAAATATTTGAGTCGATACTAACAACAACTACATCATGCAAGATATGTTTGTGGGACAA AGAGACCGAGCGAACAAACGAAACGGCAAAACCATCATCTACATGTATCAAGTGCGCGGTAAAC CCCTCATGGAAGAATTTCCAAGAAAACCTCCCAAAGTCCATGGTATCTTCTATATGAGGTAATG CACGCTGCCTCTAGATCAACAAGTAATATCAGCTCACGATTATCTTGCGACTCTGATCACATCA CAATAACAATGGGGAACCCACATACGCAACCGTTCTCCTTGGAGTACCATGCCATTGCACTTAC GGCCCCCTCAAGCACAAATATGGCACCTCAAGCTGATTTCCACCATGCAAACTTGAGTATGTAA TCAAAGGTGTAGAACGGAGTCAAGAACTCATCTTAAAGTCACATAAAACTATGGTCATGCACTC ATGGATCACGACTACTACCTTCAGGCTCACAAATTAATGCCCCCTTTTCAATCATATATATGAG AAGAAACGTGTACAAAGTACACATTAACTGGTCACGAAAAAACTTTCGTGTAGGGAAAAGGATC ACAAGGTCCACTCCACTCCGCACCTCAGCTAAATAAATCATTTTTCGAAAGTGAGATAGTCTTA ACTCTTAAGTCTTAACCCATCCATCTAAGTTACTAGTTTCTGTCTTTTATAAGTCATTTTGTTT CTTTTTCTTGGATTTTAATTGAAGCCAAAATGTGTGAATTAAATCCGGGAGATGGAAAAAATGT TCGATAATTTGAATTATTATTTTTATATGTATTTTGTATTTGAATCATGAATTTTTTATATTTC GTTTGCATAGAAGAATCCAAAAACATATGATTTTTTGTCAAAACAAAAACTTAAAACCAAACAT ATAGTAGATGCGACGTTTTCATTATCATTTGGAATCTAGTTTTATTTAGAACTTTTTGGGAACG TTAACTACTTTTCCTTCTAAATAACTGTTTCAGCTTTTAATGCATAACCAATGATCAAATTTAA CGTAAACAAAATTTCCAAAATTTAGTAACTTCATGCTTGACAAATTTCAGTCTTTGTCGATCCT TGCTTTATGTAATGCTATTTCTTGACTTAATATCCCACTTAGGGGTTTGGAATACATGTTTTAT GTTTATAATTTTAAAAGATGCATTTGAATTTTCTGTATATACTACCTTTTCCAAATCTCCAATG GCTATGTCATCTGAAAAATGGTTACACTCCCTTACATAAACTTTTCTCTAAATATCGAGGTTTG ATTGATTGCTTTCATGTGCAAAATTTCTTAAAACAATGTAGCAAGTTTTTCTTTTTTTATTAGA GTTTATTGGTTAGTCTAGGGAGTCAAAAGCAAGAATTATGAGGATAATTTAAAGGAGCCACAAT GTTGTTTAAAGGAGCTAAACGAAAAATAAGATTTCAAAGATTTAAGGGCAAAAATGAAATGAAA TGATAACTATAATTATAGAGAAACTGATAGGAATAACATTTTCACTTTCAAACAATAGTTCCTC AACTGTTAAGTCGGCAAATAATTTCTTAAATTTGCATTGACCACATAGAAATGGGTTCCAGAAT AATCAACGCTGAATATTCCAGAAAGGGGATTAAGCTTCGGTGAAGCTTGGGGGCTTGTAGGCAA TGAAACTGATGCATTGGACTTGACGGGTGTTGTCGAATCCGATGATCCTAATGAAGGCGCCAGG GTACTCCTTCTTGCATTCTTCAACTTCCTTCAACACTTGAGCGGAGTCGGTGCATCCGAACAAT GGAAGCTTCCACATTGTCCAGTATCGTCCATCATAGTATCCGGGAGTGTTTCCGTGCTCACGGT ACACAAATCCGTG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.376878711

Conservation Information
Conserved circRNAs	NA
PMCS	0.376878711

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to methyl jasmonate

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to methyl jasmonate

			
						 Other Information
					
						References
						Zhang et al., 2020

circRNA

Detail information of 5_circ_ag.9

Address

Any questions?

Supported by