Detail information of BGIOSGA033481_circ_g.4


General Information
CircRNA Name BGIOSGA033481_circ_g.4
ID in PlantcircBase osi_circ_008733
Alias Chr10:24546508_24546850(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21704508-21704850  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA033481
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033481_circ_g.1 BGIOSGA033481_circ_g.2 BGIOSGA033481_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered BGIOSGA033481-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATCAATCATTCTAGGTAGCATCACATGTGTTGATGGGTATTACAAAAGCCACGGCGGTGTTGC
CAACTATTCTTTCTCCCCTTGGGAAGGCCTGTTCCGgggaagaatatactgttgctcatggatt
cctccttagaagggcagtatgctaatgaagatgcttcaaaactagttgaccttgcgtcgaaatg
cttgcaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGAAGAATATACTGTTGCTCATGGATTCCTCCTTAGAAGGGCAGTATGCTAATGAAGATGCTT
CAAAACTAGTTGACCTTGCGTCGAAATGCTTGCAATTTGAAGCGAGGGACAGACCCAATATAAA
GTATCTCTTGTCTTCTGTTGGGCCTCTTCAGAAGCAAAAGGAGGTAAATAACTTGACAGCCTTT
TGTCGGTTGCTAATGTTTTTCATTGCATTTGGTAACACCGTTTATTTCTTATATCAATCATTCT
AGGTAGCATCACATGTGTTGATGGGTATTACAAAAGCCACGGCGGTGTTGCCAACTATTCTTTC
TCCCCTTGGGAAGGCCTGTTCCG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021