Plant Circular RNA Database

Detail information of Os01g0177200_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os01g0177200_circ_g.5
					
						ID in PlantcircBase
						osa_circ_000506
					
						Alias
						Os_ciR2756
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 3991159-3994372  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os01g0177200						
					
						Parent gene annotation
						
							Similar to Ubiquitin-specific protease 14. (Os01t0177200-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os01g0177200_circ_g.2 Os01g0177200_circ_g.3 Os01g0177200_circ_g.4 Os01g0177200_circ_igg.1 Os01g0177200_circ_g.2 Os01g0177200_circ_g.3 Os01g0177200_circ_g.4 Os01g0177200_circ_igg.5 Os01g0177200_circ_g.6 						
					
						Support reads
						4/1
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0177200-01:9

General Information
CircRNA Name	Os01g0177200_circ_g.5
ID in PlantcircBase	osa_circ_000506
Alias	Os_ciR2756
Organism	Oryza sativa
Position	chr1: 3991159-3994372 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os01g0177200
Parent gene annotation	Similar to Ubiquitin-specific protease 14. (Os01t0177200-01)
Parent gene strand	+
Alternative splicing	Os01g0177200_circ_g.2 Os01g0177200_circ_g.3 Os01g0177200_circ_g.4 Os01g0177200_circ_igg.1 Os01g0177200_circ_g.2 Os01g0177200_circ_g.3 Os01g0177200_circ_g.4 Os01g0177200_circ_igg.5 Os01g0177200_circ_g.6
Support reads	4/1
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0177200-01:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGGATTTTTAGCCACCCTGAGGCTTTTAGCTCAGTACCTACTGATTCTTCAACAAGCAATATGG
AAGATGATGATGCACACATACCAGATGGAAGTGGCAggacaagaaggaatacaccctcgtatgt
ttaagacagttattgctgcaaagcatcccgaattttccagtatgaggcaacaggtactttggac
ctggaatc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAGCATCCCGAATTTT
CCAGTATGAGGCAACAGGTACTTTGGACCTGGAATCACACATTTTTGGTTGAGGAGCTACTTAT
TTGAATTTTCCTTTGCATCATTAACTGCAATTTTGGGTACAATTTTTTCCAAATAGTCATTTTA
ACTCATCTCTTTGTCCAGGATGCGCTTGATTTCTTCCTTCATCTTATTGACCAAGTTGATCAGG
CAAACACCGGAAACCATGAGCTGAATCCTTTTACAGGGTTCAAATTCTTCATTGAGGAGCGTCT
TCAATGCCCTTCTGGAAAAGTCTCCTATAACAAACGTTCTGACTACATTCTTTCTTTGAACATA
CCGTTACATGAAGCTACTAACAAAGGTGACTTTAAAACCTTTTTCCCTGTTGTATTATAAAGTT
AGTGCATATATCCTTGACACCTGTGAGATATGCAGAGCAGCTAGAAGCATTTCATGAGAAGAAA
GCTGCAATGGATTTGGATGGAAAGGAAGTGTAAGTTGTTCATAGCTCATGCACTGTCTAATGAG
CACGACTTATGTTTCACTTTGCTTCCATAAAACAGGTCTAATGAGGAAATTGTGAGGCCTAGAG
TCCCACTGGAGGCATGCTTAGCAAGTTTTTCAGGCGCGGAGGAAGTGCCTGAATTTTACAGCAC
TGCATTGAATTCAAAGACAACAGCAATTAAGTATGCATATCTTCATTGCCATTTGGTTCTATTA
TATACATGGAAATGTGGTACAGCCTTATTGATTGAATAAGAAATATTTCAAAATGCAAGCAAAC
TCATATCTGTGGCATGTTCAGTTTGTAAAAGACTGAATCTCTCAAACTTGCCTTATATGTAACT
TGGCTAGCTGTAATTCAACTCAATATAGCAGATGAAATGTAATGCCTGAGCAATTCAACATTAA
CACATTACTGTGACTGGGTGTACTGCTATAATTTAGTCGTACTATCTTAAGACCATTACCGAGA
CACTTAATAGGGAACTTCCAGTCCTTGTTTTTTTAATTTCTCAGTGTGAGGTGTCATGACCTTG
GTTTTTATTTTTGAACATGATTCCTCTGCTTATTTAGTCTCCTGGATCATTCACAATGTTTTGT
TTCAACATTGTCCTTGTGTGCAAATAGTAAAATGGTATGTTCATTATAGTTTTAGTATAGGTCT
GTTTAATGATGTGGAAACAGGAGATGGCTTCTTACTAACACATTATATAACTTGTTGGTTTTCA
GGACTGCTGGCTTTAAAACATTTCCTGATTACCTGGTGTTGCAGATGCGCAAGTTTGTAATGGA
AGCAGGATGGGTGCCAAAGAAACTAGGTAATGTCCCTATCAAGTGTCAGTTGTCTCTCATGTGT
GCTGACTCTAGATTCGAATAGTTGCCCCAAACTGTATGGCGGACTGATTTCCTGAAAGAACTAG
CACTCTAGCAGTACCTATCCATATGATGACCTATATTCTTCGTATTTTCTGGCCCAGTAAACTT
TTTATCCCATAATTCATGTTGATAGAAGTTGATTGGAATGAGGCTTTATTACCAGCGAATGATA
TTCCCTCCATTTTTTAATAGATGATGCCGTTGACTTTTGAACACATGTTTGATCATTCGTCTTA
TTCAAAAATTTTATGCAAATATATAATATATAAACCATGCTTAATGTACTTTGAGTGATAAAAC
AACTCACAACGAAATAAATTATAATGGTCAAACGTGTAACAAAAAGTCAACGGCTTCATCTATT
TAAAAAGGGAGGTAGTGTGATGTAACACATCGCATTGTTTGATGTACTCTGTCTCCAACAAACA
ATAATTTTGAAGTAATCCTATAATTTGGCAGGAATAACAACTAGGCTTTACTTCTAAGTTCTTA
GTATTTCACTTCTCCTGTTTGAGAAATTTTGGAACCTGAGCTGGTTTCGTGGTGCATACACTCC
CTCCATCCCAAAATATAACAACTTCTAGCCTTCAATATTTGTCCCAAATATAACAACTTCTCCA
CCTACATTCTCTTCTCAACCAGCCACAATCTTCCACCATTCAAATTCTCTACCTACCTCCTCTT
CTCAACCAATCACAGCCTTCTCCCATTTAGTTCCACTTTCATAATAACCGAGTCCAACGTACTC
CTTATATTTTGGGACGTAGGTAGTAACTAAGTTTCCATGTAGACAGTAATTCAGTTTCTTTTCA
CCATATTTGGTCATTTGTTGTCTTGAGTCTTGACATTGAATTTCCCCTCAGATGTATACGTAGA
TGTGCCAGATATAATTGATATCTCGCACATGCGCAGCAAAGGCATACAGCCTGGTGAAGAGCTA
CTACCTGAAGGAGGTTAGACTGTTGTTTATTAGATTTTCAACTTGATCAGATTTTCCCGATTGA
CTTTGCTGACTGCAACATATTCTTGCAGCTTCTGGTGATAACAAAGCTGAACCTGTTCATCCTG
TTGCCAGTGAGGACATTGTATCTCAGCTGGCAAGCATGGGGTTCAATTATCTTCATTGCCAGAA
AGCTGCTATTAGTACATCAAACACAGGAGTTGAGGAGGCGATGAATTGGCTTCTCTCACACATG
GATGATCCAGGTCAGTATACAAACAGAAATGTTACATATTACTTCTTTGTCATCATGAAAGGAT
GATTGGCCGTCTTGTAATTTGTAACTTGACCGCTACAAACTTTAATCACCTTTCTGCTATACAG
ATATCAACGATCCAATATCTAAAGATTCACAGGCTGCTGAACAAACTGTTGATGAAACTAGCGT
TCAAACTCTTGTTTCCTTCGGATTTCAAGAAGATGTTGCTCGAAAGGCCTTGGCAGCTTCTGTA
ATAATCTTCTGTTTTTAATTTCATCCATGATAGTTGATCTTTTACATTTTCTTGTACAGTTCGC
AATGTTGAATACCTCTCAGAAAGTTGATATTTGCTTATTTTCATATAATGACCTTTCAAAACTG
TCTTAGGGTGTTCCTTTCCCGTTGTCTGCAACCAACCTTTTTGATCGGAGGCTTATGTTTTGTA
CTTCTAATGTGATAGGGTGGAAATATCGAGAGAGCAACAGACTGGATTTTTAGCCACCCTGAGG
CTTTTAGCTCAGTACCTACTGATTCTTCAACAAGCAATATGGAAGATGATGATGCACACATACC
AGATGGAAGTGGCA
						
					

			
		

Sequences
Splice junction sequence	TGGATTTTTAGCCACCCTGAGGCTTTTAGCTCAGTACCTACTGATTCTTCAACAAGCAATATGG AAGATGATGATGCACACATACCAGATGGAAGTGGCAggacaagaaggaatacaccctcgtatgt ttaagacagttattgctgcaaagcatcccgaattttccagtatgaggcaacaggtactttggac ctggaatc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAGCATCCCGAATTTT CCAGTATGAGGCAACAGGTACTTTGGACCTGGAATCACACATTTTTGGTTGAGGAGCTACTTAT TTGAATTTTCCTTTGCATCATTAACTGCAATTTTGGGTACAATTTTTTCCAAATAGTCATTTTA ACTCATCTCTTTGTCCAGGATGCGCTTGATTTCTTCCTTCATCTTATTGACCAAGTTGATCAGG CAAACACCGGAAACCATGAGCTGAATCCTTTTACAGGGTTCAAATTCTTCATTGAGGAGCGTCT TCAATGCCCTTCTGGAAAAGTCTCCTATAACAAACGTTCTGACTACATTCTTTCTTTGAACATA CCGTTACATGAAGCTACTAACAAAGGTGACTTTAAAACCTTTTTCCCTGTTGTATTATAAAGTT AGTGCATATATCCTTGACACCTGTGAGATATGCAGAGCAGCTAGAAGCATTTCATGAGAAGAAA GCTGCAATGGATTTGGATGGAAAGGAAGTGTAAGTTGTTCATAGCTCATGCACTGTCTAATGAG CACGACTTATGTTTCACTTTGCTTCCATAAAACAGGTCTAATGAGGAAATTGTGAGGCCTAGAG TCCCACTGGAGGCATGCTTAGCAAGTTTTTCAGGCGCGGAGGAAGTGCCTGAATTTTACAGCAC TGCATTGAATTCAAAGACAACAGCAATTAAGTATGCATATCTTCATTGCCATTTGGTTCTATTA TATACATGGAAATGTGGTACAGCCTTATTGATTGAATAAGAAATATTTCAAAATGCAAGCAAAC TCATATCTGTGGCATGTTCAGTTTGTAAAAGACTGAATCTCTCAAACTTGCCTTATATGTAACT TGGCTAGCTGTAATTCAACTCAATATAGCAGATGAAATGTAATGCCTGAGCAATTCAACATTAA CACATTACTGTGACTGGGTGTACTGCTATAATTTAGTCGTACTATCTTAAGACCATTACCGAGA CACTTAATAGGGAACTTCCAGTCCTTGTTTTTTTAATTTCTCAGTGTGAGGTGTCATGACCTTG GTTTTTATTTTTGAACATGATTCCTCTGCTTATTTAGTCTCCTGGATCATTCACAATGTTTTGT TTCAACATTGTCCTTGTGTGCAAATAGTAAAATGGTATGTTCATTATAGTTTTAGTATAGGTCT GTTTAATGATGTGGAAACAGGAGATGGCTTCTTACTAACACATTATATAACTTGTTGGTTTTCA GGACTGCTGGCTTTAAAACATTTCCTGATTACCTGGTGTTGCAGATGCGCAAGTTTGTAATGGA AGCAGGATGGGTGCCAAAGAAACTAGGTAATGTCCCTATCAAGTGTCAGTTGTCTCTCATGTGT GCTGACTCTAGATTCGAATAGTTGCCCCAAACTGTATGGCGGACTGATTTCCTGAAAGAACTAG CACTCTAGCAGTACCTATCCATATGATGACCTATATTCTTCGTATTTTCTGGCCCAGTAAACTT TTTATCCCATAATTCATGTTGATAGAAGTTGATTGGAATGAGGCTTTATTACCAGCGAATGATA TTCCCTCCATTTTTTAATAGATGATGCCGTTGACTTTTGAACACATGTTTGATCATTCGTCTTA TTCAAAAATTTTATGCAAATATATAATATATAAACCATGCTTAATGTACTTTGAGTGATAAAAC AACTCACAACGAAATAAATTATAATGGTCAAACGTGTAACAAAAAGTCAACGGCTTCATCTATT TAAAAAGGGAGGTAGTGTGATGTAACACATCGCATTGTTTGATGTACTCTGTCTCCAACAAACA ATAATTTTGAAGTAATCCTATAATTTGGCAGGAATAACAACTAGGCTTTACTTCTAAGTTCTTA GTATTTCACTTCTCCTGTTTGAGAAATTTTGGAACCTGAGCTGGTTTCGTGGTGCATACACTCC CTCCATCCCAAAATATAACAACTTCTAGCCTTCAATATTTGTCCCAAATATAACAACTTCTCCA CCTACATTCTCTTCTCAACCAGCCACAATCTTCCACCATTCAAATTCTCTACCTACCTCCTCTT CTCAACCAATCACAGCCTTCTCCCATTTAGTTCCACTTTCATAATAACCGAGTCCAACGTACTC CTTATATTTTGGGACGTAGGTAGTAACTAAGTTTCCATGTAGACAGTAATTCAGTTTCTTTTCA CCATATTTGGTCATTTGTTGTCTTGAGTCTTGACATTGAATTTCCCCTCAGATGTATACGTAGA TGTGCCAGATATAATTGATATCTCGCACATGCGCAGCAAAGGCATACAGCCTGGTGAAGAGCTA CTACCTGAAGGAGGTTAGACTGTTGTTTATTAGATTTTCAACTTGATCAGATTTTCCCGATTGA CTTTGCTGACTGCAACATATTCTTGCAGCTTCTGGTGATAACAAAGCTGAACCTGTTCATCCTG TTGCCAGTGAGGACATTGTATCTCAGCTGGCAAGCATGGGGTTCAATTATCTTCATTGCCAGAA AGCTGCTATTAGTACATCAAACACAGGAGTTGAGGAGGCGATGAATTGGCTTCTCTCACACATG GATGATCCAGGTCAGTATACAAACAGAAATGTTACATATTACTTCTTTGTCATCATGAAAGGAT GATTGGCCGTCTTGTAATTTGTAACTTGACCGCTACAAACTTTAATCACCTTTCTGCTATACAG ATATCAACGATCCAATATCTAAAGATTCACAGGCTGCTGAACAAACTGTTGATGAAACTAGCGT TCAAACTCTTGTTTCCTTCGGATTTCAAGAAGATGTTGCTCGAAAGGCCTTGGCAGCTTCTGTA ATAATCTTCTGTTTTTAATTTCATCCATGATAGTTGATCTTTTACATTTTCTTGTACAGTTCGC AATGTTGAATACCTCTCAGAAAGTTGATATTTGCTTATTTTCATATAATGACCTTTCAAAACTG TCTTAGGGTGTTCCTTTCCCGTTGTCTGCAACCAACCTTTTTGATCGGAGGCTTATGTTTTGTA CTTCTAATGTGATAGGGTGGAAATATCGAGAGAGCAACAGACTGGATTTTTAGCCACCCTGAGG CTTTTAGCTCAGTACCTACTGATTCTTCAACAAGCAATATGGAAGATGATGATGCACACATACC AGATGGAAGTGGCA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.108001532

Conservation Information
Conserved circRNAs	NA
PMCS	0.108001532

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							3991184-3991187(+)
3993785-3991187(+)
3991433-3994312(-)
						
						Potential amino acid sequence
						
							MFKTVIAAKHPEFSSMRQQDALDFFLHLIDQVDQANTGNHELNPFTGFKFFIEERLQCPSGKVS
YNKRSDYILSLNIPLHEATNKEQLEAFHEKKAAMDLDGKEVSNEEIVRPRVPLEACLASFSGAE
EVPEFYSTALNSKTTAIKTAGFKTFPDYLVLQMRKFVMEAGWVPKKLDVYVDVPDIIDISHMRS
KGIQPGEELLPEGASGDNKAEPVHPVASEDIVSQLASMGFNYLHCQKAAISTSNTGVEEAMNWL
LSHMDDPDINDPISKDSQAAEQTVDETSVQTLVSFGFQEDVARKALAASGGNIERATDWIFSHP
EAFSSVPTDSSTSNMEDDDAHIPDGSGRTRRNTPSYV*(+)
MIQISTIQYLKIHRLLNKLLMKLAFKLLFPSDFKKMLLERPWQLLVEISREQQTGFLATLRLLA
QYLLILQQAIWKMMMHTYQMEVAGQEGIHPRMFKTVIAAKHPEFSSMRQQDALDFFLHLIDQVD
QANTGNHELNPFTGFKFFIEERLQCPSGKVSYNKRSDYILSLNIPLHEATNKEQLEAFHEKKAA
MDLDGKEVSNEEIVRPRVPLEACLASFSGAEEVPEFYSTALNSKTTAIKTAGFKTFPDYLVLQM
RKFVMEAGWVPKKLDVYVDVPDIIDISHMRSKGIQPGEELLPEGASGDNKAEPVHPVASEDIVS
QLASMGFNYLHCQKAAISTSNTGVEEAMNWLLSHMDDPDINDPISKDSQAAEQTVDETSVQTLV
SFGFQEDVARKALAASGGNIERATDWIFSHPEAFSSVPTDSSTSNMEDDDAHIPDGSGRTRRNT
PSYV*(+)
MVSGVCLINLVNKMKEEIKRILLPHTGKFGMLCSNNCLKHTRVYSFLSCHFHLVCVHHHLPYCL
LKNQ*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	3991184-3991187(+) 3993785-3991187(+) 3991433-3994312(-)
Potential amino acid sequence	MFKTVIAAKHPEFSSMRQQDALDFFLHLIDQVDQANTGNHELNPFTGFKFFIEERLQCPSGKVS YNKRSDYILSLNIPLHEATNKEQLEAFHEKKAAMDLDGKEVSNEEIVRPRVPLEACLASFSGAE EVPEFYSTALNSKTTAIKTAGFKTFPDYLVLQMRKFVMEAGWVPKKLDVYVDVPDIIDISHMRS KGIQPGEELLPEGASGDNKAEPVHPVASEDIVSQLASMGFNYLHCQKAAISTSNTGVEEAMNWL LSHMDDPDINDPISKDSQAAEQTVDETSVQTLVSFGFQEDVARKALAASGGNIERATDWIFSHP EAFSSVPTDSSTSNMEDDDAHIPDGSGRTRRNTPSYV(+) MIQISTIQYLKIHRLLNKLLMKLAFKLLFPSDFKKMLLERPWQLLVEISREQQTGFLATLRLLA QYLLILQQAIWKMMMHTYQMEVAGQEGIHPRMFKTVIAAKHPEFSSMRQQDALDFFLHLIDQVD QANTGNHELNPFTGFKFFIEERLQCPSGKVSYNKRSDYILSLNIPLHEATNKEQLEAFHEKKAA MDLDGKEVSNEEIVRPRVPLEACLASFSGAEEVPEFYSTALNSKTTAIKTAGFKTFPDYLVLQM RKFVMEAGWVPKKLDVYVDVPDIIDISHMRSKGIQPGEELLPEGASGDNKAEPVHPVASEDIVS QLASMGFNYLHCQKAAISTSNTGVEEAMNWLLSHMDDPDINDPISKDSQAAEQTVDETSVQTLV SFGFQEDVARKALAASGGNIERATDWIFSHPEAFSSVPTDSSTSNMEDDDAHIPDGSGRTRRNT PSYV(+) MVSGVCLINLVNKMKEEIKRILLPHTGKFGMLCSNNCLKHTRVYSFLSCHFHLVCVHHHLPYCL LKNQ*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os01g0177200_circ_g.5

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