Detail information of Os01g0177200_circ_g.2


General Information
CircRNA Name Os01g0177200_circ_g.2
ID in PlantcircBase osa_circ_000508
Alias NA
Organism Oryza sativa
Position chr1: 3993617-3993767  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method circseq_cup
Parent gene Os01g0177200
Parent gene annotation Similar to Ubiquitin-specific protease 14. (Os01t0177200-01)
Parent gene strand +
Alternative splicing Os01g0177200_circ_g.2 Os01g0177200_circ_g.3 Os01g0177200_circ_g.4 Os01g0177200_circ_g.5 Os01g0177200_circ_igg.1 Os01g0177200_circ_g.3 Os01g0177200_circ_g.4 Os01g0177200_circ_igg.5 Os01g0177200_circ_g.6
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-GC
Number of exons covered Os01t0177200-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGTTCAATTATCTTCATTGCCAGAAAGCTGCTATTAGTACATCAAACACAGGAGTTGAGGAGG
CGATGAATTGGagcttctggtgataacaaagctgaacctgttcatcctgttgccagtgaggaca
ttgtatctcagctggcaagcatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 151
Transcript exons: 3993617-3993767
AGCTTCTGGTGATAACAAAGCTGAACCTGTTCATCCTGTTGCCAGTGAGGACATTGTATCTCAG
CTGGCAAGCATGGGGTTCAATTATCTTCATTGCCAGAAAGCTGCTATTAGTACATCAAACACAG
GAGTTGAGGAGGCGATGAATTGG

Genomic sequence AGCTTCTGGTGATAACAAAGCTGAACCTGTTCATCCTGTTGCCAGTGAGGACATTGTATCTCAG
CTGGCAAGCATGGGGTTCAATTATCTTCATTGCCAGAAAGCTGCTATTAGTACATCAAACACAG
GAGTTGAGGAGGCGATGAATTGG
Conservation Information
Conserved circRNAs NA
PMCS 0.214128035
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016