Detail information of BGIOSGA008057_circ_g.9


General Information
CircRNA Name BGIOSGA008057_circ_g.9
ID in PlantcircBase osi_circ_003859
Alias 2:13410990|13415714
Organism Oryza sativa ssp. indica
Position chr2: 13410990-13415714  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA008057
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA008057_circ_g.1 BGIOSGA008057_circ_g.2 BGIOSGA008057_circ_g.3 BGIOSGA008057_circ_g.4 BGIOSGA008057_circ_g.5 BGIOSGA008057_circ_g.6 BGIOSGA008057_circ_g.7 BGIOSGA008057_circ_g.8 BGIOSGA008057_circ_g.10 BGIOSGA008057_circ_ag.1
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA008057-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGGAATCTGTCGATACTTACTGGGAAACATTAAAGTACAGTTGTGTAACAGCAGGCTTGGCT
GAGACAAGTGCCTTCCCTGGCTGCTGCATCCCTGAGcttggcaaacgtcttgggggaaagtaca
acaattcgaaagagctccatgatcgagtatcatctatgcatgatagattcaatctgactgtgga
ggttgaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGGCAAACGTCTTGGGGGAAAGTACAACAATTCGAAAGAGCTCCATGATCGAGTATCATCTA
TGCATGATAGATTCAATCTGACTGTGGAGGTTGAAGTCGTTGCAAAAGTAAACAGGCAGAGTTT
GGACTTCAAAAATTTTTCGCTGTACAATGCTACTCTGTGAAATTGTGATGTGCCAGATGATCAT
GACTATTGTTCAGTATGGCCTCTCATTCCTTCTGAAGAACCGACTTCTGTTAGCCCATATGGTT
TTGTGGTTAATAACAAACTCTTGTTTGAAGAAGATTGTCATGATGAACCACCCGTACATCGTCT
CCTGAATAGCCATGAAGCTTGTGTTGGAGTTTCTCAACCAGTTGAACAAGGTACATCATTCTAA
ATTCCTGTCAGTTCTTTTTTTCTCTCTCTAAAATAGTGACACGATCATGCATTACAATGGGCCC
ATATGACTGGGAATAGGCTGGGGGTGTGCATGTAGGATAAAACACATGATCCAACTTTTGTTTT
TCTGTTAACCAACCACTTGGTTTTCTATCTTGTTTATCTGAAGAGGTGTTGGTACAACATGAGG
GGAGGGTTGGACGGATGATTCCCCTTTTTATAGTAAGAAATTGTGCTTAGTGTTTCTTTGGAAA
CTACTGTGCTGCTGTAAGAGCTTGTGGTCTCTGTGCCCATAGATCCAAAAGGCCCATAGAAAAC
CTAGAGTTTCAATCTTTGATGCATGAGCACCTTATTGAAATCAACAGAGTAGGACAGAGTACAG
TTTTGCTCAATTAAGGTGATCCTTTTTTTTTCTTTCAGATAAAGTTGCCTTTCAGAGGAAGAGG
CATTGCTGGCCCACGTCAATTTCTGATGATCGAAGACAGAAAAGGATTTTTCACATATTAAAGG
TTGCTTGCTTACCTGTCAATCAATATTCTTGTATGAACTATCTGCCAAAATACCGATGTGTTGG
AAATCGCTGTTCTTTTCCCTTTGACTTTCTACGAGCTTCATTTGCAGCATGAAATTTAGTCAGA
AGTTGCTTTTGTCTTGAGATTTTATAGGATCATAGGATTGTCTGTGGCTTGTTTATACTTCTAA
TTGCATTGTTAGTGCATACGTTAGGTATGCAGATATCTGCAAGTGGTATCTGTGCATTAACCCT
CCACTTTATAGGAGCACCTTACATACTTCCAATTGCATTCTCTATTCATACTAGTACGGTGCCT
GTGTATTGCTATAGATCTCAAATAAATATACCATGAAATTTGATGTAGCAAATCCAACATAATT
ATCCTTGAAACATATATAATTAATAGAATCAACTTACAATCACACGTACACATGTTATATGAAT
ACAATATTTTACAAAAAAACATCTTGCAAACAACATTCATTTCTACACAAATCTATCCACAAAA
GATCTCAACCGAGTGGTTGCCATAGAACTGTTACACACCATCAGCAGCTCCTCCTTTTAATTAG
TTAAGAGGTGGTGCTGTTTATCTACAAGTACTTTGTGCAACTTGTATCCCTTTTAGAGGACTTT
AGTCAAATAACCTTCCGGCCCAATCATTTGAAACTGATTTTTTTTGGATAAGTTCTTCATGCTT
CGTTGACACCCTTACAAGTTACTTTATGCTTCGTTGACACCCTTACAAGTTACTTTACCGTTCA
AACATTGTTCCTTTTTTTTTCTCACTTGCTATGTCTCTTGAATCTCATGAAATTGTGGTACATT
AGCAGCTATGAACACATGGGTTCCCACCAGGCAGTTTGTTCTGCCCTCTTTGCTTTACTCATCT
GCAGCCTCCCTTTTCACTGTCACCACAGTTGGTAGTAGTGCAAGTCAATGTTGTTAAGTCTGCT
AGAGTGCTAGTCGAACCTAGTTGTATGGGTACCTATCAGCCAGTTAATCTTGATTAGTCATCGA
TTAAGTCCAATTAGTTGCGGTGGCTGGTTGGCTAGTCGAGCAGGATAGTCGTTCTGCTTACTTG
CCTAATCCAGGATGCATATAGCATAGTTGTATAAGTAGTTGACTACTGCTACTAGACTGCACCA
AGTGCACAGACACAGAAAACACAGTAAATTGGAAAGCAAAGCAAAGCATCAGGCATGGCCACCT
AGTTGTCCAGAGTCCAGATTCAGACTCGATAGACTCCAGAGCAGCAAATAAAAGAAATTGCTGA
AGGACATATTACTTACTAGGATTCCTTTTATCTCTATCTCTTATTATTAGGCTTTGAGAAGCAA
TCACCTTCGGACCTCTCGTAGATTATCAGCTTGGCTTTGCTCATCACCAGTCACCGTCTTCCAT
AGAACGTTTATTGAATATGGACCTTAGCCTCATATCTTCCTTTATGGCAAACAACTCGGCTGGA
TTCAAGTATAGGGTTGCCCCATGCAGCCTTTTGCTCCATTTGGTTGTCCCATCTCTTGCCAAAG
TAGCACAGTTCCTCTTTGAGTAAATTTCTATTGTCTGTCAAAGAATGCTTGATGGATGTCTTCG
CAATATCCATGGCTGGCATGATGTCAGGAGCTGCTGGTGTCTCATCACCATATTCTGTCCCCAG
GAAATGAGAACTGGCTGTTTAGCTCATACAATATTCCACTAAAGTCCAAAACGGCATGAAAAGG
ACAATGCTCTCAAGTCTCATTCATCTCCTCTTCAGTACTAGTTGACAACTAGTCGTCCATCACT
TAGTCAGATGACTAGTTGTAATTGGTCCCTGATTAGTCAAACGACCAGGTTTCTAGTCGAGCTA
GTTGCCTCGGAGTGCCAAATCAAGATCCAGAGACCAATAACCCGATTCATCATGACTTATTGGA
TGATTTAATAACATTGGTGCAAGTAGCTATACCTGTGGTAGGACCATGCATTATGTGATATGAG
AGACAATTTTATGGCTGCTAATCTGTCAAGATGTGATGATAGACACAAGGAATTTGCAATAAAA
TGATAAGAACACTGTATGTGGATTTACTATATCATGATTTGTGGGGATGTTAGTTATCCAAAAT
GTATAGGAGAGCCAGTTACATGCTTGAAGTATTTTTTTTTATTTAAAATCTCCAGGTTGTGGCC
TCTATCTCTGGCATGTTTGACCCTACTTTTCTGATGTGGCAGCTAATGATTAGTTAACTGTTTC
ATGTTTTTCATTTATACAAAACTAGATTAACTGTTTTATATCATTTTGTTCGTTCAAACAAGGA
TGGATAAAGGAGGGCATACTAGTGTGGTTACAAGACAATAATATCCTAAAGAGAGTTGTGAGAA
GCATTCTCTGTGCGCGCGTGCGCTTCACTTTCATGTGCATGCATGGTGTATCATGTCTGTCTTC
ATCTTTTATAACAACTTTTAGTTTCCGTTTGCAGAAACATAGTTTTGTACTGATGGTGGAGTTG
CATAAATGGTTAGAGAGAGTTGAAAAGGAAAATCGGAAAATATTTGACAGGAAGACATTGATTC
ACACTTTGGATAAGCTTCAGCAAGAGGGTACTTGTAAGTGTATTAAAGTTAATGTCCCTGTGGT
TACAAACTACGCTGGCAGCCGTTCCATATTGATGTAATACTGAATTCTTCTGTTAAAGTCATGT
CACCGGAACTCATGGATCAAATTAGGAACAGACTAAGAAATTTTGATTCTCAAAGTCGTTCAGG
TGCAGCAGCTAAACTGAAGCAAAAGCAAGATACAGCTGCCATACATGGCTTGAGGGTTCAACGC
AGAGTCAAAGTTAAAAAAATATCAATATCAGAAGCTATTCATGACAACGGATTCATAGGTGCAA
AGATGATTCGGGCAATATTGTTACATAAATTTCTGTGGGTATATGTTAGTGGTTTGCCAAACGG
GTCCAACGACTGTGTCAAAGAAGGGTAGCATTATGACAAGAACCTTGATCAATCATGTCTGTTA
TTTTCAATCACAGCAGCTATAAAGAAAATGCCTCTTGAACTCTTTCTACAAGTTGTGGGATCAG
CAAAGGTTCATACCTTGATAAAAAAGTGTTCTCTTGGAAAAACACTTTCAGAGATTCCTACCGA
CATATACAATCAGCTCATGGATACTCATGCCAAGGGCCGACTCTCGCGCCTAATAAATATTTTA
GATAAACTCAAGGTAATATTCTTTGTCTTTGGTGTTTGGCTGTTTGCAATTATTATTTTGAGAA
TTGTTAAATTAAATGTATTGTATAGCTAGCTGTGTATTTCTTCTGTTCTAGAGGGTGTTGTCTG
CACATTTATACATTTCCATTTGTGCAACGAAAATCTCAATCATTAGGCGTGTTCTTAAAACTGA
GATTGCAGGACTGGATTTCTTTAGGTTGATATTTTCCTGCTGCATTTATCTTGTTATACCAATT
CCTCTTCATGTTTAATGCAATTCAGTTTGCATGCTATCTTGACTTATCTAGCACAACAAACTTA
AAATGACCATTTTTTTTGGGCTATATATGCTAGTTGATCGGACTTCTAAATGGATACATAGAGG
ATTCTAATGTGCAACCAGATGATTTGCCTACTCATTCGCTGGAGCTCAGGCCTTACATCGAAGA
ACCTACTCCAAGGATCATTCTGTCATCACACGTTAATGGAAACCATTGTCCAAAATTTCGACAT
GATTTTCAGCTTTCAAAGCTGGAATCTGTCGATACTTACTGGGAAACATTAAAGTACAGTTGTG
TAACAGCAGGCTTGGCTGAGACAAGTGCCTTCCCTGGCTGCTGCATCCCTGAG
Conservation Information
Conserved circRNAs osa_circ_014452*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2932
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021