Detail information of Os04g0504800_circ_g.3


General Information
CircRNA Name Os04g0504800_circ_g.3
ID in PlantcircBase osa_circ_024501
Alias NA
Organism Oryza sativa
Position chr4: 25197901-25199098  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0504800
Parent gene annotation Similar to Poly(A)-binding protein. (Os04t0504800-01);Similar to
polyadenylate-binding protein 2. (Os04t0504800-02);Similar to p
olyadenylate-binding protein 2. (Os04t0504800-03)
Parent gene strand -
Alternative splicing Os04g0504800_circ_g.1 Os04g0504800_circ_g.2
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0504901-01:4
Os04t0504800-01:4
Os04t0504800-02:1
Os04t0504901-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATCCACTTCTGCGACTGCTTGGGTCACGGTTTGAGTACATTACCCGAATGGGTTTGCCATTCA
GAGGAGCAAAGTTGAGCAGCTCCAGTGCTCTTGCAGctgcaacatcgccttcctgtcttcttta
cgttgtgcaaatgcgacatacaatggctttccagatatcattttgccattcatttcagttaact
gtataaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCAACATCGCCTTCCTGTCTTCTTTACGTTGTGCAAATGCGACATACAATGGCTTTCCAGAT
ATCATTTTGCCATTCATTTCAGTTAACTGTATAAAAGGAACTATGTAAGCCACAGTGATATACA
ATAGCTAATCCAATATTCAGGAAGTAAACTTACAGCTTGAGATGCTTCCTCACGAGTTGAAAAT
GCAACAAATCCAGACCCTTTGCTAACACCATTTGCATCACGCATTATCTGTCAAACAAATCCAG
TTAGTTATAATCATATATCAGTAAGAAACAAAAGTGAAGGAAAAAAGGTGGATGACATGAATCA
CCTTGCATGAAGTAATTTTGCCATAGTTAGAGAACAATTCACAAAGCTGGTCATCCCCAATGCT
ATCATCCAAATTCTTCATGTATAAGTTCAGTCCTTGATATTTGTCAGCAGCATCTTTCATGCTT
TGCTCAAATCTTCTCTTCAATTCAATCTCTCTTTCTGACTTCTTCTGAGCTCTTCCAACATACC
ATTCTTTGTCATTAATTTTCTTTCCATTAAGTTCCTCAACAGCACGAGCAGCATCATCTGGGCT
CTTAAAATTGATGAAACCAAAGCACCTTGATTTACCATCCATGCCAACCATGATAACAGCACTT
GTGATGTTCCCATAGGCACCAAAAATTTTGACTAGATCCTCCTTTGTGGTGGACTCAGACAAAT
TTTTCACAAAAACATTGTTAAACTTTGTCTTGTCAACAGAATTCTCTCTCTCTTGCTTGCGGAG
AAAAGGTCCAACATAAACAGGCTTATCATTGATCAGCATCCCATTTAGACTTTTTATTGCAGAT
TGGGCAGCCTCTCCCTTGTCATACTGAACAAAACCAAAGCCTTTGGATTGGCCCATTTCATCTG
TGGCAACCTTACAGGAGAGAATGTTACCAAATGCAGAAAAGGTATCATGGAGAGTTTTGTGGTC
TATTGCTTTGTCAAGGTTCTGAAAAAGGCAGTTGAATTGTTTGCATTAGAGATAACCAATAAAA
GATGATTGTTTTAGCGTGACAATACACACTAACAAATGAGTAAATGACCTAGTACCTTGATGAA
AATGTTAGCAGATCCACTTCTGCGACTGCTTGGGTCACGGTTTGAGTACATTACCCGAATGGGT
TTGCCATTCAGAGGAGCAAAGTTGAGCAGCTCCAGTGCTCTTGCAG
Conservation Information
Conserved circRNAs osi_circ_005591*
PMCS 0.374930655
Functional Information
Coding potential Y
Potential coding position 25198818-25198114(+)
25197949-25199025(-)
25199041-25199062(-)
Potential amino acid sequence MLPNAEKVSWRVLWSIALSRFLMKMLADPLLRLLGSRFEYITRMGLPFRGAKLSSSSALAAATS
PSCLLYVVQMRHTMAFQISFCHSFQLKLEMLPHELKMQQIQTLC*(+)
MSHLHNVKKTGRRCCSCKSTGAAQLCSSEWQTHSGNVLKP*(-)
MYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDK
GEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGA
YGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELK
RRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAF
STREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQLQEHWSCSTLLL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017