Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0504800_circ_g.3 |
ID in PlantcircBase | osa_circ_024501 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 25197901-25199098 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os04g0504800 |
Parent gene annotation |
Similar to Poly(A)-binding protein. (Os04t0504800-01);Similar to polyadenylate-binding protein 2. (Os04t0504800-02);Similar to p olyadenylate-binding protein 2. (Os04t0504800-03) |
Parent gene strand | - |
Alternative splicing | Os04g0504800_circ_g.1 Os04g0504800_circ_g.2 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os04t0504901-01:4 Os04t0504800-01:4 Os04t0504800-02:1 Os04t0504901-01:4 |
Conservation Information | |
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Conserved circRNAs | osi_circ_005591* |
PMCS | 0.374930655 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
25198818-25198114(+) 25197949-25199025(-) 25199041-25199062(-) |
Potential amino acid sequence |
MLPNAEKVSWRVLWSIALSRFLMKMLADPLLRLLGSRFEYITRMGLPFRGAKLSSSSALAAATS PSCLLYVVQMRHTMAFQISFCHSFQLKLEMLPHELKMQQIQTLC*(+) MSHLHNVKKTGRRCCSCKSTGAAQLCSSEWQTHSGNVLKP*(-) MYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDK GEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGA YGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELK RRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAF STREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQLQEHWSCSTLLL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |