Detail information of Os04g0504800_circ_g.1


General Information
CircRNA Name Os04g0504800_circ_g.1
ID in PlantcircBase osa_circ_024499
Alias NA
Organism Oryza sativa
Position chr4: 25195759-25199098  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0504800
Parent gene annotation Similar to Poly(A)-binding protein. (Os04t0504800-01);Similar to
polyadenylate-binding protein 2. (Os04t0504800-02);Similar to p
olyadenylate-binding protein 2. (Os04t0504800-03)
Parent gene strand -
Alternative splicing Os04g0504800_circ_g.2 Os04g0504800_circ_g.3
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0504800-02:4
Os04t0504800-03:3
Os04t0504800-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATCCACTTCTGCGACTGCTTGGGTCACGGTTTGAGTACATTACCCGAATGGGTTTGCCATTCA
GAGGAGCAAAGTTGAGCAGCTCCAGTGCTCTTGCAGcgttctttgctgttctggattagcattt
gcaagggcagaagtcagcgttccaattggagcaggtgacaaaccagcatctcgtactgggaagc
ctcccata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTTCTTTGCTGTTCTGGATTAGCATTTGCAAGGGCAGAAGTCAGCGTTCCAATTGGAGCAGGT
GACAAACCAGCATCTCGTACTGGGAAGCCTCCCATATCATACGATTGAATCATACCACCAGCAA
CCCCCGGCATTGGTGGAACATCAGGCATGTTATGCGCAGGTGGGTAACGGTACACACGTCCTCT
TGGAAGCATCTGTTAAAAGAACCATGGTAAGACGTGTGTCGTCACTGTTCATTCAATTGGTCCA
CATGACAAGGATAAGTGGACAACCCATCCAATGATCCAAAATTCGAGAGGAAAGGATAAATGGT
AGAATTCATACATGAAAAAGTGGATATGGGGGTTTTCTAAGTACTACAAAACGAATAGCTCGCT
GTTTGAATAAATATATCCACCGACAAACTTCCCCTCCCCTACCACTGCTTGGGAGCTCAGCACG
GTTTCATGTTCTATTTCACTACCCACTGGGGGTTCTTTTTACCTTTCCCTCATGGCACTACTTC
GCTATCAGTCACCGTAAATCATAAAAAACTTGGCACAACAGTAGAAGGTACAATGTTATAAGGA
TGTATATTAGCAAACCTGTTGCTGAAATGGCTGAGCAGATTGCTGTCCCTGGGCAGAACCAGCA
CCAGAACGCCGGATACCTGGACGTGGACCCTGTTGACCTTGTTGGACAACTGGAACAAAGTAAT
TTGGCATATGGGCACCCCCAGGCCTCATGCCTGGAACAAGCTGTTGCTGGAAACCAAATCCAGG
CTACATGGAAGAAAATTGGTAAGAAATTGATCTACTAAATTGTCCAGAAAATACAACACATTAG
ATGGAAAATTTGAATCATTTCTATGAGATAATGATCAGACAGTAGAATTTCAAAGTAGATGCCA
AATGAACAAGATATATGCAAAATGAGTGCTTGCAGCAGAGACATAACGCCTAGTACAATGGTGT
TGATGAATGACTAACCTATTGTGTCCCAAAAACTTGCATGGCATTGATTACCATACTCAAACTC
CTGATATATGCCCAGCATCAACAAAACCAATATTGAAAACTAAATGCATAAAAGTATTGTAGGA
ATTGATCAATGATATCACTTCACTCATGAAGTTGATGTACCAATTGCAATGACCAACCAACCAT
TAGATATATAATAATGCAGAATTTCAACAACTTGACTGCAGAGGGCAGTGCTAGTCTGTTTTAT
AAACAAACAAAAACACATTGATTCTCTCTTACAGTTAAAGCTAGACGGGGAAAATGAATGCATT
GATATCGAGCAGTACCTGTGGGGGCATGATAGCAGGTGGAGCTTGTCCGTAGAAGAGTTGCTGC
CCAAGAGGAGCCATAGGAGGGTACATGGGAAGACGTGGAGCCATGGAAGGTGTCATCGGTACAG
GGCGCACCTGAGAAAATTGTGCCTAAATAACATGGAACATGCTACCGTCAGCATTTCTTTTTCA
TTATGAAATGATCAGAAACAACTCAACAAGAAGAATGAGTTATTATAAAGCATTTATTAAGAAA
CTTTGTCAAAACACAGCAGTAAGAACTATGGTACAGCCGTACAACTTAAATATATGTTGTGGAC
TGCAGGCAATTGAAGATACATTTCTGAGGATTCAACTACAGATCTATGGAGCATGCATTGTGAG
TCATCCCTGCATATCAGTATTTCCCTCAACTATTATACAGAATAATGAGTTCTGAACTGATGCT
TAAAAGTTCTTCGCCAAACCCAATGACCTACTTCCTCCGTTTCACAATGTAAGTCATTCTAATA
TTTCCCACATTCATATTGATGTTAATGAATGTAGACATATATATCTATCTAGATTCATTAACAT
CAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTAAATATCAATA
ATCATAACTTAATTGCCTAGATTATCAATAACCATAAACAAATTACTGTTGCTCTTGTAAACAT
TGAGTTCATGATGGTGCAAAACAGAACAGTAATTCATGTGGCATATCTTATTTTCATATCCATA
AATAGTACTAGGAATAGCAGTTTGGGCATGCATGTTGTCATGAATTGAATTATTCAATTACAAA
CACTCAGCTGCTTAAAGGACTACACTATACCTGCAACATCGCCTTCCTGTCTTCTTTACGTTGT
GCAAATGCGACATACAATGGCTTTCCAGATATCATTTTGCCATTCATTTCAGTTAACTGTATAA
AAGGAACTATGTAAGCCACAGTGATATACAATAGCTAATCCAATATTCAGGAAGTAAACTTACA
GCTTGAGATGCTTCCTCACGAGTTGAAAATGCAACAAATCCAGACCCTTTGCTAACACCATTTG
CATCACGCATTATCTGTCAAACAAATCCAGTTAGTTATAATCATATATCAGTAAGAAACAAAAG
TGAAGGAAAAAAGGTGGATGACATGAATCACCTTGCATGAAGTAATTTTGCCATAGTTAGAGAA
CAATTCACAAAGCTGGTCATCCCCAATGCTATCATCCAAATTCTTCATGTATAAGTTCAGTCCT
TGATATTTGTCAGCAGCATCTTTCATGCTTTGCTCAAATCTTCTCTTCAATTCAATCTCTCTTT
CTGACTTCTTCTGAGCTCTTCCAACATACCATTCTTTGTCATTAATTTTCTTTCCATTAAGTTC
CTCAACAGCACGAGCAGCATCATCTGGGCTCTTAAAATTGATGAAACCAAAGCACCTTGATTTA
CCATCCATGCCAACCATGATAACAGCACTTGTGATGTTCCCATAGGCACCAAAAATTTTGACTA
GATCCTCCTTTGTGGTGGACTCAGACAAATTTTTCACAAAAACATTGTTAAACTTTGTCTTGTC
AACAGAATTCTCTCTCTCTTGCTTGCGGAGAAAAGGTCCAACATAAACAGGCTTATCATTGATC
AGCATCCCATTTAGACTTTTTATTGCAGATTGGGCAGCCTCTCCCTTGTCATACTGAACAAAAC
CAAAGCCTTTGGATTGGCCCATTTCATCTGTGGCAACCTTACAGGAGAGAATGTTACCAAATGC
AGAAAAGGTATCATGGAGAGTTTTGTGGTCTATTGCTTTGTCAAGGTTCTGAAAAAGGCAGTTG
AATTGTTTGCATTAGAGATAACCAATAAAAGATGATTGTTTTAGCGTGACAATACACACTAACA
AATGAGTAAATGACCTAGTACCTTGATGAAAATGTTAGCAGATCCACTTCTGCGACTGCTTGGG
TCACGGTTTGAGTACATTACCCGAATGGGTTTGCCATTCAGAGGAGCAAAGTTGAGCAGCTCCA
GTGCTCTTGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.269802186
Functional Information
Coding potential Y
Potential coding position 25198818-25195778(+)
25195786-25199025(-)
25199041-25199062(-)
Potential amino acid sequence MLPNAEKVSWRVLWSIALSRFLMKMLADPLLRLLGSRFEYITRMGLPFRGAKLSSSSALAAFFA
VLD*(+)
MLIQNSKERCKSTGAAQLCSSEWQTHSGNVLKP*(-)
MYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDK
GEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGA
YGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELK
RRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAF
STREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQVRPVPMTPSMAPRLPMYPPM
APLGQQLFYGQAPPAIMPPQPGFGFQQQLVPGMRPGGAHMPNYFVPVVQQGQQGPRPGIRRSGA
GSAQGQQSAQPFQQQMLPRGRVYRYPPAHNMPDVPPMPGVAGGMIQSYDMGGFPVRDAGLSPAP
IGTLTSALANANPEQQRTLQEHWSCSTLLL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017