Detail information of Zm00001d035960_circ_g.3


General Information
CircRNA Name Zm00001d035960_circ_g.3
ID in PlantcircBase zma_circ_008928
Alias zma_circ_0002484
Organism Zea mays
Position chr6: 62651060-62672025  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d035960
Parent gene annotation DNA-directed RNA polymerase III subunit 2
Parent gene strand +
Alternative splicing Zm00001d035960_circ_g.1 Zm00001d035960_circ_g.2 Zm00001d035960_circ_g.4 Zm00001d035960_circ_g.5 Zm00001d035960_circ_g.6 Zm00001d035960_circ_g.7 Zm00001d035960_circ_g.8 Zm00001d035960_circ_g.9 Zm00001d035960_circ_g.10 Zm00001d035960_circ_g.11
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d035960_T026:23
Zm00001d035960_T001:31
Zm00001d035960_T003:32
Zm00001d035960_T019:31
Zm00001d035960_T004:32
Zm00001d035960_T018:32
Zm00001d035960_T002:30
Zm00001d035960_T028:16
Zm00001d035960_T024:30
Zm00001d035960_T005:31
Zm00001d035960_T008:26
Zm00001d035960_T021:31
Zm00001d035960_T015:30
Zm00001d035960_T006:31
Zm00001d035960_T029:10
Zm00001d035960_T007:31
Zm00001d035960_T009:31
Zm00001d035960_T025:7
Zm00001d035960_T023:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTACAATCACAAACTGAAGACTTCATACTGTTCAATGTGCAAGAATGGGGAAAACATGGCCAAG
ATGAGGCTGCCATACGCTTGCAAGCTTCTATTCCAGgtgagtgccctcttgatcctggcggcta
ctttgttgtcaaaggaacagagaaggtaacacaaaacagtgctgtaattttcttcttttcttgc
tggattga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.379191734
Functional Information
Coding potential Y
Potential coding position 62671961-62651287(+)
62651504-62672022(+)
Potential amino acid sequence MCKNGENMAKMRLPYACKLLFQVSALLILAATLLSKEQRRSF*(+)
MDKGKIYLQLNQFNKPIPIIVVMKAMGMESDQETVQMVGRDPRYGDLLFPSIQECASERIYTRQ
RALQYMDEKVTYPGATNQKEGRSYSILRDVFIAHVPVCNGQDTSFWKDQWISDELLSSQLPSLH
SHLLRGVSIEVMSSRLATQLKPHLSRQNHSHCNINLRKKNVLDMNTCDICGLAGEDTNNIIFMC
PFARAFWMRIGVNPNMIAAVQELWTSTAPLGVPMETLSTTLLLGTVWELWKHGDMDYVGNKRFE
LSGQLISLLFELIMQDSITFGLERAISTGNWDIKRFRMHRKGVSQVLSRLSYMASLGYMTRITP
QFEKTRKTSGPRALQPSQWGMLCPCDTPEGEACGLTKNLALLSHVTTDQEEGPLIYLCYSLGVE
DLLSLSSEEIHTPGSFLVMFNGLILGKHKDPQRLVIDLRNLRRSNVIGEFVSIFINEKQLKWFG
HVQRGPSEAPMRSAILRYHSNEKRDRGRPKLTWKEIVKGDLHCVHIASDGGRVCRPLIIADMGI
SRIDETHMEKLRLVCHQHGTCGFDDFLRDGLIEYLDVNEENNALCAMGKQAMGNIAYNQVGYDK
LGAGQNATVAVMGYSGYDIEDAIVMNKSSLDRGFGRCIALKKYTVLKDNYGDGVSDMIVEPQRD
NGVLIKQNMRALDEDGIAGPGQIIRNHDIYVNKRTPKNTSKGIGRALRESDYKDSPALYKGVDG
ETTVVDRVMLCSDTNDKLSIKCIIRHTRRPEVGDKFSSRHGQKGVCGWLTLIFLASRMTIGKMI
ELLGGKAGVSCGRFHYGSAFGEPSGNADKVADISSTLIKHGFSYNGKDFLYSGILGQPLEAYIF
MGPIYYQKLKHMVLDKMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFER
LLLSSDPYQVQKMWLVRLLQSQTEDFILFNVQEWGKHGQDEAAIRLQASIPGECPLDPGGYFVV
KGTEKVILIQEQLAKNRIIVDTDSKGRVIASVTSSTHAIKSKTVIFMDKGKIYLQLNQFNKPIP
IIVVMKAMGMESDQETVQMVGRDPRYGDLLFPSIQECASERIYTRQRALQYMDEKVTYPGATNQ
KEGRSYSILRDVFIAHVPVCNGQDTSFWKDQWISDELLSSQLPSLHSHLLRGVSIEVMSSRLAT
QLKPHLSRQNHSHCNINLRKKNVLDMNTCDICGLAGEDTNNIIFMCPFARAFWMRIGVNPNMIA
AVQELWTSTAPLGVPMETLSTTLLLGTVWELWKHGDMDYVGNKRFELSGQLISLLFELIMQDSI
TFGLERAISTGNWDIKRFRMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRALQPSQ
WGMLCPCDTPEGEACGLTKNLALLSHVTTDQEEGPLIYLCYSLGVEDLLSLSSEEIHTPGSFLV
MFNGLILGKHKDPQRLVIDLRNLRRSNVIGEFVSIFINEKQLKWFGHVQRGPSEAPMRSAILRY
HSNEKRDRGRPKLTWKEIVKGDLHCVHIASDGGRVCRPLIIADMGISRIDETHMEKLRLVCHQH
GTCGFDDFLRDGLIEYLDVNEENNALCAMGKQAMGNIAYNQVGYDKLGAGQNATVAVMGYSGYD
IEDAIVMNKSSLDRGFGRCIALKKYTVLKDNYGDGVSDMIVEPQRDNGVLIKQNMRALDEDGIA
GPGQIIRNHDIYVNKRTPKNTSKGIGRALRESDYKDSPALYKGVDGETTVVDRVMLCSDTNDKL
SIKCIIRHTRRPEVGDKFSSRHGQKGVCGWLTLIFLASRMTIGKMIELLGGKAGVSCGRFHYGS
AFGEPSGNADKVADISSTLIKHGFSYNGKDFLYSGILGQPLEAYIFMGPIYYQKLKHMVLDKMH
ARASGPRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLLLSSDPYQVQKMWLVRL
LQSQTEDFILFNVQEWGKHGQDEAAIRLQASIPGECPLDPGGYFVVKGTEKVILIQEQLAKNRI
IVDTDSKGRVIASVTSSTHAIKSKTVIFMDKGKIYLQLNQFNKPIPIIVVMKAMGMESDQETVQ
MVGRDPRYGDLLFPSIQECASERIYTRQRALQYMDEKVTYPGATNQKEGRSYSILRDVFIAHVP
VCNGQDTSFWKDQWISDELLSSQLPSLHSHLLRGVSIEVMSSRLATQLKPHLSRQNHSHCNINL
RKKNVLDMNTCDICGLAGEDTNNIIFMCPFARAFWMRIGVNPNMIAAVQELWTSTAPLGVPMET
LSTTLLLGTVWELWKHGDMDYVGNKRFELSGQLISLLFELIMQDSITFGLERAISTGNWDIKRF
RMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRALQPSQWGMLCPCDTPEGEACGLT
KNLALLSHVTTDQEEGPLIYLCYSLGVEDLLSLSSEEIHTPGSFLVMFNGLILGKHKDPQRLVI
DLRNLRRSNVIGEFVSIFINEKQLKWFGHVQRGPSEAPMRSAILRYHSNEKRDRGRPKLTWKEI
VKGDLHCVHIASDGGRVCRPLIIADMGISRIDETHMEKLRLVCHQHGTCGFDDFLRDGLIEYLD
VNEENNALCAMGKQAMGNIAYNQVGYDKLGAGQNATVAVMGYSGYDIEDAIVMNKSSLDRGFGR
CIALKKYTVLKDNYGDGVSDMIVEPQRDNGVLIKQNMRALDEDGIAGPGQIIRNHDIYVNKRTP
KNTSKGIGRALRESDYKDSPALYKGVDGETTVVDRVMLCSDTNDKLSIKCIIRHTRRPEVGDKF
SSRHGQKGVCGWLTLIFLASRMTIGKMIELLGGKAGVSCGRFHYGSAFGEPSGNADKVADISST
LIKHGFSYNGKDFLYSGILGQPLEAYIFMGPIYYQKLKHMVLDKMHARASGPRVLLTRQPTEGR
SRDGGLRLGEMERDCLIAYGASMLIFERLLLSSDPYQVQKMWLVRLLQSQTEDFILFNVQEWGK
HGQDEAAIRLQASIPGECPLDPGGYFVVKGTEKVILIQEQLAKNRIIVDTDSKGRVIASVTSST
HAIKSKTVIFMDKGKIYLQLNQFNKPIPIIVVMKAMGMESDQETVQMVGRDPRYGDLLFPSIQE
CASERIYTRQRALQYMDEKVTYPGATNQKEGRSYSILRDVFIAHVPVCNGQDTSFWKDQWISDE
LLSSQLPSLHSHLLRGVSIEVMSSRLATQLKPHLSRQNHSHCNINLRKKNVLDMNTCDICGLAG
EDTNNIIFMCPFARAFWMRIGVNPNMIAAVQELWTSTAPLGVPMETLSTTLLLGTVWELWKHGD
MDYVGNKRFELSGQLISLLFELIMQDSITFGLERAISTGNWDIKRFRMHRKGVSQVLSRLSYMA
SLGYMTRITPQFEKTRKTSGPRALQPSQWGMLCPCDTPEGEACGLTKNLALLSHVTTDQEEGPL
IYLCYSLGVEDLLSLSSEEIHTPGSFLVMFNGLILGKHKDPQRLVIDLRNLRRSNVIGEFVSIF
INEKQLKWFGHVQRGPSEAPMRSAILRYHSNEKRDRGRPKLTWKEIVKGDLHCVHIASDGGRVC
RPLIIADMGISRIDETHMEKLRLVCHQHGTCGFDDFLRDGLIEYLDVNEENNALCAMGKQAMGN
IAYNQVGYDKLGAGQNATVAVMGYSGYDIEDAIVMNKSSLDRGFGRCIALKKYTVLKDNYGDGV
SDMIVEPQRDNGVLIKQNMRALDEDGIAGPGQIIRNHDIYVNKRTPKNTSKGIGRALRESDYKD
SPALYKGVDGETTVVDRVMLCSDTNDKLSIKCIIRHTRRPEVGDKFSSRHGQKGVCGWLTLIFL
ASRMTIGKMIELLGGKAGVSCGRFHYGSAFGEPSGNADKVADISSTLIKHGFSYNGKDFLYSGI
LGQPLEAYIFMGPIYYQKLKHMVLDKMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERDCLIA
YGASMLIFERLLLSSDPYQVQKMWLVRLLQSQTEDFILFNVQEWGKHGQDEAAIRLQASIP(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b