Detail information of Os01g0518500_circ_g.3


General Information
CircRNA Name Os01g0518500_circ_g.3
ID in PlantcircBase osa_circ_001958
Alias NA
Organism Oryza sativa
Position chr1: 18398123-18398237  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os01g0518500
Parent gene annotation Glycoside hydrolase, family 27 protein. (Os01t0518500-01);Glycos
ide hydrolase, family 27 protein. (Os01t0518500-02)
Parent gene strand -
Alternative splicing Os01g0518500_circ_g.2 Os01g0518500_circ_g.4 Os01g0518500_circ_g.5
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATGGATTGAATTCTTGCAGTCAGAAACTGCAGACAGAGCATATTGGCTCAATTTACtagaaaa
ataatcaagcgtttttagataatgagaaaaaaagcaagttaaaggttaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TAGAAAAATAATCAAGCGTTTTTAGATAATGAGAAAAAAAGCAAGTTAAAGGTTAATTAATGGA
TTGAATTCTTGCAGTCAGAAACTGCAGACAGAGCATATTGGCTCAATTTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.144926957
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017