Detail information of BGIOSGA035180_circ_igg.2


General Information
CircRNA Name BGIOSGA035180_circ_igg.2
ID in PlantcircBase osi_circ_008968
Alias Chr11:12766053_12768696(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 10788055-10790699  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA035180_circ_g.1 BGIOSGA035180_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TA-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCCCACCAGCAGATGCTGATAGCGCAACGAGGATGTTTGTGGACTATTTGAACAGGGAAATCA
GTTCCTGATATCAATTTCTGATGGATTGACCCTATGcttttctgtgatacagaagtggaccatt
gtagggaatggaacaccaagcgtcaggagaaaggagaacccacgtatgataataatatgtatgt
gagagatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTCTGTGATACAGAAGTGGACCATTGTAGGGAATGGAACACCAAGCGTCAGGAGAAAGGAG
AACCCACGTATGATAATAATATGTATGTGAGAGATTTCATATTTTTTGGATCTTCTTGACCTAT
TAAATTCAAATGAGGAAATGCTGCATGATTTCTCAGTTTTTTTTATTTAGTTCTATAGATTGAT
TCCACAAACTACAGATATGTTGCATGTAGTTGTATTATGGTCTAGAGATCATATTGGGTAATCA
TGGAAGGAGGGAGGCTTTGGCAGGTTAGAGCAGAAGAAGAGTATTGTGGGGGAAGGGTTGCAGG
GGATAGAAGGGAAAGGTAGGAATGGGTGAATAAATTGATAATCCTTGCTTTCCCCATTCATTAC
TCACTGATCCTTACTAATCCAACTCCTAACACCAATTTAATATGATGACAAAAGAATCTAAACT
AATGCAACAAACTGAACTGATAATATTGGCCCTACGGAACGTGCTGCTAGTTTGTCACGTCTGA
TTCAAATTTTTGGTGCTTCTTGGCATTCTTTATAGGCTATGAAATCCATTGTTATTTTTGCCTC
CTTGGGAATATAACAAAGCATGTGTCCCTGGCATTTAATACAATACATAACCAGGTACTATTGT
CCGCTCACCAGTTTTTTCTATTGTGACAGATTCGATGATCTGGTAAGTAGATTTGAGAAGCCAG
ATAGGCGCAATCGTTGGGATTCTCCTCTTTTTGAATTGTTTCCATCTAGAGGTAATCAGTATAT
CTATATCAGTACCTACCATAGATATGCATATTGCCTTATGCAATGTCAAAACTCAAAACTGATT
TTGTACTATTTTGAATAGATGGAGTAATGGAATCGTCTCCTGTTATTGCTGAGGCTGTATCATA
TTTGACTAAGAAAGTGGACTCTAAGACAAGAGATGTGAAAGTTCTCCAACCTACAATAGCCACT
CAGACTGTAAGTGCAATCTATTCTTGAAAAACTGCCGCGTGATCATATAATCCCCAAATAATTC
ATTTTCCAAATTATTCCATTCTCTCATAAATTTGGCTTGGTATTGTGATATGGAGTCTTAACTC
CATATGTTCTTCAATGAATATGCTTATGTTGGATAGTATAGGGAGGAGACAAGGAAGGATTACA
GATATGGAAGGAGTCCACACAAATCAATCCTATCCTAATACGACTCTAACTACCATATACTCTT
ACAGCTTAGTTCCTATCTTTTTTGTGTATTAGCTCTTTGTACCCCTGGCAAACAATTTCTGTCA
AAATCTAAATGTGATGGTGTAAATGCACAAAAAATCAGAAGAATCAATGCCTTAGTCACTTTCT
GCAGATACTGTACTCTCTTTATGATGCTGGAAGTGTAGTGCTATTGCATTTATGCTTGTACCTG
TAGCTGTTGGAATTGAATCCTGACTTGGGTTGTGTTTAGATCCAAAGTTTGGATCCAAACTTCA
GTCCTTTTCCATCACATCAACCTGTCGTACACACACAACTTTTCAGTCACATCATCTCCAATTT
CAACCAAAATCCAAACTTTGCGCTGAACTAAACACAGCCTTGGTGATATTTTAGGCTCGGACAA
CAGAAGCTAATTCCCTTTACGAGATGGACAAAGCAACGCAGGTAATGACAGTCATTTTGGTTGA
TATCTGATATTTCAATTATGGATTTCTCTTTAGTCAGCATACCTTTTGAGCTGATTTGCAGGAG
GTGATCAATGCAATTGTTGAAGCACAATCTTGTGGTCTTGGGCTTCCCGTGAATAAGATTTCTC
TTGGTCCTGACCTACCAACTATATCCTTTACTGTTTGAGCCAATTCTTTTATCCTGTATACATA
TAAGTTTAAACAATATACTCTTAAGCTTTGTGTGTCAATTGATTCTTTTTTATATATTATAAGT
GCAGTATATGAAGATCTAGCAATCTTAACTGGCTAGTGTAAAATAATCTTCTGATACAAAAACA
CCCTTTCATATAGAGCTTTATCCACATTTCTTTCACCTTGCAACTGTTTGAAAATCAAGTAGGT
GAAAATACTTCCAAAATGGTAGTTTTGCACATTGAATAATAATTGGCCACACTTTTATGCTACG
AGGAAGCCTTGATATGTAAGCTTCAAAGGTAGGGGCACCTTCTATCCGTTGTACTCCCTCCGTC
CCAAAGAAAGACAAACACTAGGTTTCTGTGTCCAACGTTTGACCGTCCGTCTTATTTGAAAAAA
TTATGAAAAAAATTAAAAAAAACAAGTCACGTATAAAGTATTAATCATGTTTTATCATCTAATA
ACAATGAAAATACTAATTATAAAAAAAATTTCATATAAGACGGACAGCCAAACGTTGGACACGG
AAACTCAGGGTTTGTCTTTTTTTTGTTTTTTTAGGATGGAGGGAGTATAAGCAAAGAACCATTA
TATCCTTAACTGGTTGTTACATATGTCTTCAAAGATCAGTCGGTCTGCCTGAGCTTCGAAGCCT
GCGACGCACTTTCATTAAGCTGGCAGGGCAGTACAGCTTGAGTGGACCTCCCCCACCAGCAGAT
GCTGATAGCGCAACGAGGATGTTTGTGGACTATTTGAACAGGGAAATCAGTTCCTGATATCAAT
TTCTGATGGATTGACCCTATG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021