Detail information of BGIOSGA035180_circ_g.1


General Information
CircRNA Name BGIOSGA035180_circ_g.1
ID in PlantcircBase osi_circ_008966
Alias Chr11:12768610_12772359(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 10784942-10788141  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA035180
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA035180_circ_igg.1 BGIOSGA035180_circ_igg.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   TA-GA
Number of exons covered BGIOSGA035180-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATTTTATTTCAGCTTTTCTGTGATACAGAAGTGGACCATTGTAGGGAATGGAACACCAAGCGT
CAGGAGAAAGGAGAACCCACGTATGATAATAATATGccaatccctccctcatggggattaaccg
aacaaggcctaagtgggatggttttcaagcacgatatcatttctggtgactttgcggatttctt
tggcacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAATCCCTCCCTCATGGGGATTAACCGAACAAGGCCTAAGTGGGATGGTTTTCAAGCACGATA
TCATTTCTGGTGACTTTGCGGATTTCTTTGGCACAAAAATTAACCGAACAAGGCCTAAGTGGGA
TGGTTTTTAGCACGTTAAGTTGGAAAAATAAGAAATATTTGCCAAGTATGATTGTAGTCATAGT
TAGGGTAGCAAATGAATGCAAGCTGAAGCCATGTAGAGGATGTGATGAGTGCATTTTTATTGAT
CTTTCTGCTTGAAGCTCAAGCGTCACCAATGAGATCTTGAGAAGTTCCTATATAATTTGCCTCA
CTTCCAATGTGGCCACAAATAGTATGTCAAGACATACTTGGCTGAACTTAGTTATTGCAAAAGT
TAGGCGCAAGCCAATGTTGAACAATACCAAAAATATGTAACTGGCAAAGTTTGCTTTCCAACCA
ACAAGTTATTTCAATATGGGTATTTCATGAATCAGTTAAGTGGCAATCTAGTTTGTAAATATGT
GTTGCTTTCTGTTGTCAGTTCTATCGTTACTAATAAACAGCTACATGCTTTGTGAATTCTCATG
AAAATTGTAATATGTAGTAAATTCTGTGATTTGTTGGCATATTGTTAACGCATGATGCTTCAAA
TGAAACATGATTTTGAGATATTAGTGTGCATGTGTTGCCATATTTTGATATAATCAATTCCACC
TATAATATGCAGGGATACCGGTATGAGTTGTGGTGTCTTGCACGGGCATCTGGAATAAGATACT
GTGTGGTAACCTGCTTGCTGCCTTGTTTGTCTACTTCTATTCTTTTAGATTTTTAAATATTAGT
TTTACTCAAAGACTAGCATAGCGTTAAAAATCACGTGTCATCAAGGTATGGATTTTAGTTAACA
CTACAAGTTAGGTACAAAACCAATTTGGAGGAAAAAGATCATGTATGATGGCAATCAATGTTAT
CTGATCGTCCGATTAATCGTGCTTAATCATCCTGATCAGTCTCCTGACTACTCCGATCAGGGAC
ATTCACTCGATCATAAATTGTTGGTCCAATTAATCGTCGATCAGGCACAATTAATTGTCCGATC
AGAGCACCTATCGATCACCTTTTGAACAATTCTTAGGGTTTAGCACATGTGAATATGTGCTACT
ACTGCTGGTTGCTTTATACTAGGGCAAGTGACCATCTTGCCATCAATTATTAGTGCTGTGATTG
CTTTATACTATGCACTATATAGAATATAGGTTCTAGTATTCATAGTACTGATCAGGTCGACTAA
TTGAGGCTGATCGACGATTAATTTTCCTGGTCGGTCCCTTGGTGATCAGGATCAATCAGCGATC
AAATAACATTGATGGCAATAACAAGAGAACTAACTCAATATTAATTTGTAAATAATGTGTGATA
ATCTTGATCTGGTTAAGACCCACAAATTAGAATGACAGTTGAGAAACAAAGTAAAATAAGCTTT
ACAGAGAAATAAGATACTTCCTCCATTCATATTATAAAGGCCTCTTTGAATCATAGGAATGAAA
AAAACGGAGGAATAAGAAAAGCATAGGATTCTGACATGAATGGAAATGTAAAACAGAGGATTGC
AAAACATAGAAAAACATAGGAATGATTGTTTGATTGGGCTGCAGGAAAAACACATGAATTCGAG
GAGAGATAAAGACTAAAGGATTTTTTCCATGAGGTTCTACCTCATGTTAAATTTCCTCCAAAAC
TTGCATGGGGCAGGGTGAAAAAAGTGAAAACGACTTATATAATATAATAAAATGGAGGGAGTAG
TAAAGTGTACGGAAGGAATTGCCACATATCTTGTTTTGATCTGTTGGCATCCACTACTTTATTG
ATCTCACTTGGATTCTTTGCATCCTCGGTCTTACTTCCTTCGATACTCAGACACACGGTAAATT
TGTCATGGACATGAGTCCTACTGGCAGCTGCTTCACTGGCTGTGCACAACAGGCTGTAATTGAG
TTATGGACTAGAGATAAGTTTGGTTTGGAGATGTTTTTCTAGGATTAGTTGAGTTGCCCTGATG
ATCAAGTATTGGATAAGAGTCCTGGAGGCATGTTTCGTCCGGACAGTTATCTTAGGTGGTTGCG
GTAGCGTGACTAATCCTCTCCTGGCATCAAGCCCAAGATTAAGAGCTCTCTCTCTCTCTCTCTC
TCTCAAAAATCCCTCAAAAAGGCAATTCATGTGCCTGAGAATCTGCTTATTTGCAACTGAGAAT
CATGTTAGCAGTCCTGCATGGACTCTTTTTTTCTTATTTTCTGTGTGTGTGTGTGTGTGCCTGG
AATAAGCGCATATTGGGCCACTCTTTTTAACCATTGTTGCAACTTGGACTAGATAGGTAGGGCA
TTGTTTTCACTTTGGACCAGAAATCTTTGCAATTTTTTTCACATTGAACCGGTCTTCTTCCTCT
GGCTCTCCCCCTCTTCTCTTCTCTCTCCCCTTTTTTGGTTCAAGCTCACCACGCCAATGAACAG
GCCCCACCCACGTTCTTGACCTACGTTAGCGCCTGAGCTTGAGTGCAGCACTGGCGGTCTCCAG
CTTGAGCTCGATGCGGCACGGCAGAGCTCTAGTTTGAGTTCAAGCGCATGCATAGCTAATGAAT
CATGGTGGGATATTCTAACTCCATATGGATCTCATCTCTTCACACTTCTGCCCCACCAACAGCT
AGTCAAATGGAGTCTATGCTAGCCCAAGTTCCTCATCCGCGGCTGCACCAGCTTGATTGGGGGC
TGGGGCACATAACCAGCACTGCACAATGAGTCTTGAGCACGGATGCATGGGGCAGGGTAACGAA
GGTTGAGGTCGACCTCGAGCATGTCCCAAGCTAGCGGAGCTTGAGCTCCATCTCCACCAGTACC
AACTATGATCAAGCATGTGAATCTTGACCTGAAGGTTAGATAGGTAGGTCTTAAGTGCAACATT
TTGTAAAAATTGCTATCCCAAGGTGAAAAAAAACACTGCTATGATAGAAAGGTGGTCCAATATG
ATAGAAAGGTGGTCCAATACGCAATTTACTATGATTTTTACACCATTTGATATAGTGAAAACTC
ATATAACAGACTGATAACTTCCTGCTTCTATTTTATTTCAGCTTTTCTGTGATACAGAAGTGGA
CCATTGTAGGGAATGGAACACCAAGCGTCAGGAGAAAGGAGAACCCACGTATGATAATAATATG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021