Detail information of BGIOSGA016613_circ_g.2


General Information
CircRNA Name BGIOSGA016613_circ_g.2
ID in PlantcircBase osi_circ_014467
Alias Chr04:24516218_24516534(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 22431709-22432023  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA016613
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016613_circ_igg.1 BGIOSGA016613_circ_igg.2 BGIOSGA016613_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   AT-AA
Number of exons covered BGIOSGA016613-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTGGTTACATTTGATCTGCTCAATACTTTCAGTGGAAATCTTCCGCTTCTGAATTTTGTGATT
AGCTTATTATAGTCTTTTGCTATTATAGATATTGAAggtgaacttggcaagctttgcttttgtt
ttatttaactgctttaacctaacaagccttaaagccatgatcataactcttagcacatgcggga
gatattgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGAACTTGGCAAGCTTTGCTTTTGTTTTATTTAACTGCTTTAACCTAACAAGCCTTAAAGCC
ATGATCATAACTCTTAGCACATGCGGGAGATATTGTTGCTGCTTTGCTTGAGATAGTATTGGTC
TAATACTTTGTATTTATATATACTGAGTTCTTTAGAATATGAGAAACAGATTCGTATGCAGTTG
TATGAATGCATGCGAGGTTCGAGAGTGGTTACATTTGATCTGCTCAATACTTTCAGTGGAAATC
TTCCGCTTCTGAATTTTGTGATTAGCTTATTATAGTCTTTTGCTATTATAGATATTGAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021