Detail information of BGIOSGA016613_circ_igg.1


General Information
CircRNA Name BGIOSGA016613_circ_igg.1
ID in PlantcircBase osi_circ_014465
Alias Chr04:24527137_24528611(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 22430822-22432296  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA016613_circ_igg.2 BGIOSGA016613_circ_g.1 BGIOSGA016613_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATATTTTTTAATATAGCAGGACAAAGCGACTGTCAGTAGAAGCAGTTGGCCCAAGTAGCTTCGC
TTCAAGGAAGAAAAAAACCAAAAAGGAGCAGTAAAGggtcgaagcttatatgcaatattactgg
ggacattataaacaagtcggaggaacacatctggaagcacatcaatgggaagaggttcctcaac
aaactagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTCGAAGCTTATATGCAATATTACTGGGGACATTATAAACAAGTCGGAGGAACACATCTGGAA
GCACATCAATGGGAAGAGGTTCCTCAACAAACTAGGTAAATAATCCTGTAGCGTTATCTTATAT
GCAATGCCATGTGTGCCAGCGGCCTATTGAACTTTGAACTGAGCTCTGCCTTTTTATATATCGA
ACTACTAATTTAAGAACCCATGAGGTTGACTATTTCCATGCGGCTATCATTTTCTTCATGCTGT
ATTCTTCTATAGGCATGTGATTTATCATCTACTAGTATGAATTTTCATCAACAATGATTCTGAG
AGAGAAAAATAGTGATTGATATTGGATGAGTAGTTGGTACATTTTCTCAGAACAATTATGAACG
GATTTCATCGTTAATGCTTATTCAAGTGGATGATGTGCCTTGCTTTGCAATGGTTATTTGAACT
TTCTTATATTTGTTTTCCATTGTTCTGGAAATAATATCTTCCAAAGCAATTTGCATGGAATTCT
TTTTTCCCACACAGATAGCCTTTCCATTGCATTGGAATGTTTGGTTGCTCCTATATTTAACATG
TCTATTACTCCTATTTAATAGAAAAACTAGAAGAAAAGATGGCATCAGGTGAAATGGCCGAAGG
TGAAGCTGAACAGTCAAATGAAGGGGAAAATAAAACCAAGTCAAGGAAGAAGAAGGACAAGAAG
AAAGCTGCTGTTGTTAACCCTTCTTTGCCACGAGAACCTAAACCAGAGATTGATGATTCAGATA
ATTCTGATGATCCAGATTTCTGGGTGCCTCCTGTTGGAAGTCGTTGGGATGATGATGATGGAAA
AGACCGATGGACCTCCTCTCCAGTGAAGGATAAGGATGATGCAGCAGAGGATGAAGGTGAACTT
GGCAAGCTTTGCTTTTGTTTTATTTAACTGCTTTAACCTAACAAGCCTTAAAGCCATGATCATA
ACTCTTAGCACATGCGGGAGATATTGTTGCTGCTTTGCTTGAGATAGTATTGGTCTAATACTTT
GTATTTATATATACTGAGTTCTTTAGAATATGAGAAACAGATTCGTATGCAGTTGTATGAATGC
ATGCGAGGTTCGAGAGTGGTTACATTTGATCTGCTCAATACTTTCAGTGGAAATCTTCCGCTTC
TGAATTTTGTGATTAGCTTATTATAGTCTTTTGCTATTATAGATATTGAAATTTGAACTATATG
ATCTGGTATGTTCCATGTCTAATTTGGAATATGATAGATGGTGATGACGATGGTGATGACATGG
CTGACAAGGATGACGAGGAGACAAGAGAAATTGCTTCAAGGTACTCTCGAACATTTCTTTCAAT
ATTTCAATAGTGCATACAACATAGTTAAGAGATATTTTTTAATATAGCAGGACAAAGCGACTGT
CAGTAGAAGCAGTTGGCCCAAGTAGCTTCGCTTCAAGGAAGAAAAAAACCAAAAAGGAGCAGTA
AAG
Conservation Information
Conserved circRNAs osa_circ_024227
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021