Detail information of BGIOSGA008057_circ_g.7


General Information
CircRNA Name BGIOSGA008057_circ_g.7
ID in PlantcircBase osi_circ_011592
Alias Chr02:12358915_12363643(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr2: 13410989-13415714  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, find_circ
Parent gene BGIOSGA008057
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA008057_circ_g.1 BGIOSGA008057_circ_g.2 BGIOSGA008057_circ_g.3 BGIOSGA008057_circ_g.4 BGIOSGA008057_circ_g.5 BGIOSGA008057_circ_g.6 BGIOSGA008057_circ_g.8 BGIOSGA008057_circ_g.9 BGIOSGA008057_circ_g.10 BGIOSGA008057_circ_ag.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA008057-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGGAATCTGTCGATACTTACTGGGAAACATTAAAGTACAGTTGTGTAACAGCAGGCTTGGCT
GAGACAAGTGCCTTCCCTGGCTGCTGCATCCCTGAGgcttggcaaacgtcttgggggaaagtac
aacaattcgaaagagctccatgatcgagtatcatctatgcatgatagattcaatctgactgtgg
aggttgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTTGGCAAACGTCTTGGGGGAAAGTACAACAATTCGAAAGAGCTCCATGATCGAGTATCATCT
ATGCATGATAGATTCAATCTGACTGTGGAGGTTGAAGTCGTTGCAAAAGTAAACAGGCAGAGTT
TGGACTTCAAAAATTTTTCGCTGTACAATGCTACTCTGTGAAATTGTGATGTGCCAGATGATCA
TGACTATTGTTCAGTATGGCCTCTCATTCCTTCTGAAGAACCGACTTCTGTTAGCCCATATGGT
TTTGTGGTTAATAACAAACTCTTGTTTGAAGAAGATTGTCATGATGAACCACCCGTACATCGTC
TCCTGAATAGCCATGAAGCTTGTGTTGGAGTTTCTCAACCAGTTGAACAAGGTACATCATTCTA
AATTCCTGTCAGTTCTTTTTTTCTCTCTCTAAAATAGTGACACGATCATGCATTACAATGGGCC
CATATGACTGGGAATAGGCTGGGGGTGTGCATGTAGGATAAAACACATGATCCAACTTTTGTTT
TTCTGTTAACCAACCACTTGGTTTTCTATCTTGTTTATCTGAAGAGGTGTTGGTACAACATGAG
GGGAGGGTTGGACGGATGATTCCCCTTTTTATAGTAAGAAATTGTGCTTAGTGTTTCTTTGGAA
ACTACTGTGCTGCTGTAAGAGCTTGTGGTCTCTGTGCCCATAGATCCAAAAGGCCCATAGAAAA
CCTAGAGTTTCAATCTTTGATGCATGAGCACCTTATTGAAATCAACAGAGTAGGACAGAGTACA
GTTTTGCTCAATTAAGGTGATCCTTTTTTTTTCTTTCAGATAAAGTTGCCTTTCAGAGGAAGAG
GCATTGCTGGCCCACGTCAATTTCTGATGATCGAAGACAGAAAAGGATTTTTCACATATTAAAG
GTTGCTTGCTTACCTGTCAATCAATATTCTTGTATGAACTATCTGCCAAAATACCGATGTGTTG
GAAATCGCTGTTCTTTTCCCTTTGACTTTCTACGAGCTTCATTTGCAGCATGAAATTTAGTCAG
AAGTTGCTTTTGTCTTGAGATTTTATAGGATCATAGGATTGTCTGTGGCTTGTTTATACTTCTA
ATTGCATTGTTAGTGCATACGTTAGGTATGCAGATATCTGCAAGTGGTATCTGTGCATTAACCC
TCCACTTTATAGGAGCACCTTACATACTTCCAATTGCATTCTCTATTCATACTAGTACGGTGCC
TGTGTATTGCTATAGATCTCAAATAAATATACCATGAAATTTGATGTAGCAAATCCAACATAAT
TATCCTTGAAACATATATAATTAATAGAATCAACTTACAATCACACGTACACATGTTATATGAA
TACAATATTTTACAAAAAAACATCTTGCAAACAACATTCATTTCTACACAAATCTATCCACAAA
AGATCTCAACCGAGTGGTTGCCATAGAACTGTTACACACCATCAGCAGCTCCTCCTTTTAATTA
GTTAAGAGGTGGTGCTGTTTATCTACAAGTACTTTGTGCAACTTGTATCCCTTTTAGAGGACTT
TAGTCAAATAACCTTCCGGCCCAATCATTTGAAACTGATTTTTTTTGGATAAGTTCTTCATGCT
TCGTTGACACCCTTACAAGTTACTTTATGCTTCGTTGACACCCTTACAAGTTACTTTACCGTTC
AAACATTGTTCCTTTTTTTTTCTCACTTGCTATGTCTCTTGAATCTCATGAAATTGTGGTACAT
TAGCAGCTATGAACACATGGGTTCCCACCAGGCAGTTTGTTCTGCCCTCTTTGCTTTACTCATC
TGCAGCCTCCCTTTTCACTGTCACCACAGTTGGTAGTAGTGCAAGTCAATGTTGTTAAGTCTGC
TAGAGTGCTAGTCGAACCTAGTTGTATGGGTACCTATCAGCCAGTTAATCTTGATTAGTCATCG
ATTAAGTCCAATTAGTTGCGGTGGCTGGTTGGCTAGTCGAGCAGGATAGTCGTTCTGCTTACTT
GCCTAATCCAGGATGCATATAGCATAGTTGTATAAGTAGTTGACTACTGCTACTAGACTGCACC
AAGTGCACAGACACAGAAAACACAGTAAATTGGAAAGCAAAGCAAAGCATCAGGCATGGCCACC
TAGTTGTCCAGAGTCCAGATTCAGACTCGATAGACTCCAGAGCAGCAAATAAAAGAAATTGCTG
AAGGACATATTACTTACTAGGATTCCTTTTATCTCTATCTCTTATTATTAGGCTTTGAGAAGCA
ATCACCTTCGGACCTCTCGTAGATTATCAGCTTGGCTTTGCTCATCACCAGTCACCGTCTTCCA
TAGAACGTTTATTGAATATGGACCTTAGCCTCATATCTTCCTTTATGGCAAACAACTCGGCTGG
ATTCAAGTATAGGGTTGCCCCATGCAGCCTTTTGCTCCATTTGGTTGTCCCATCTCTTGCCAAA
GTAGCACAGTTCCTCTTTGAGTAAATTTCTATTGTCTGTCAAAGAATGCTTGATGGATGTCTTC
GCAATATCCATGGCTGGCATGATGTCAGGAGCTGCTGGTGTCTCATCACCATATTCTGTCCCCA
GGAAATGAGAACTGGCTGTTTAGCTCATACAATATTCCACTAAAGTCCAAAACGGCATGAAAAG
GACAATGCTCTCAAGTCTCATTCATCTCCTCTTCAGTACTAGTTGACAACTAGTCGTCCATCAC
TTAGTCAGATGACTAGTTGTAATTGGTCCCTGATTAGTCAAACGACCAGGTTTCTAGTCGAGCT
AGTTGCCTCGGAGTGCCAAATCAAGATCCAGAGACCAATAACCCGATTCATCATGACTTATTGG
ATGATTTAATAACATTGGTGCAAGTAGCTATACCTGTGGTAGGACCATGCATTATGTGATATGA
GAGACAATTTTATGGCTGCTAATCTGTCAAGATGTGATGATAGACACAAGGAATTTGCAATAAA
ATGATAAGAACACTGTATGTGGATTTACTATATCATGATTTGTGGGGATGTTAGTTATCCAAAA
TGTATAGGAGAGCCAGTTACATGCTTGAAGTATTTTTTTTTATTTAAAATCTCCAGGTTGTGGC
CTCTATCTCTGGCATGTTTGACCCTACTTTTCTGATGTGGCAGCTAATGATTAGTTAACTGTTT
CATGTTTTTCATTTATACAAAACTAGATTAACTGTTTTATATCATTTTGTTCGTTCAAACAAGG
ATGGATAAAGGAGGGCATACTAGTGTGGTTACAAGACAATAATATCCTAAAGAGAGTTGTGAGA
AGCATTCTCTGTGCGCGCGTGCGCTTCACTTTCATGTGCATGCATGGTGTATCATGTCTGTCTT
CATCTTTTATAACAACTTTTAGTTTCCGTTTGCAGAAACATAGTTTTGTACTGATGGTGGAGTT
GCATAAATGGTTAGAGAGAGTTGAAAAGGAAAATCGGAAAATATTTGACAGGAAGACATTGATT
CACACTTTGGATAAGCTTCAGCAAGAGGGTACTTGTAAGTGTATTAAAGTTAATGTCCCTGTGG
TTACAAACTACGCTGGCAGCCGTTCCATATTGATGTAATACTGAATTCTTCTGTTAAAGTCATG
TCACCGGAACTCATGGATCAAATTAGGAACAGACTAAGAAATTTTGATTCTCAAAGTCGTTCAG
GTGCAGCAGCTAAACTGAAGCAAAAGCAAGATACAGCTGCCATACATGGCTTGAGGGTTCAACG
CAGAGTCAAAGTTAAAAAAATATCAATATCAGAAGCTATTCATGACAACGGATTCATAGGTGCA
AAGATGATTCGGGCAATATTGTTACATAAATTTCTGTGGGTATATGTTAGTGGTTTGCCAAACG
GGTCCAACGACTGTGTCAAAGAAGGGTAGCATTATGACAAGAACCTTGATCAATCATGTCTGTT
ATTTTCAATCACAGCAGCTATAAAGAAAATGCCTCTTGAACTCTTTCTACAAGTTGTGGGATCA
GCAAAGGTTCATACCTTGATAAAAAAGTGTTCTCTTGGAAAAACACTTTCAGAGATTCCTACCG
ACATATACAATCAGCTCATGGATACTCATGCCAAGGGCCGACTCTCGCGCCTAATAAATATTTT
AGATAAACTCAAGGTAATATTCTTTGTCTTTGGTGTTTGGCTGTTTGCAATTATTATTTTGAGA
ATTGTTAAATTAAATGTATTGTATAGCTAGCTGTGTATTTCTTCTGTTCTAGAGGGTGTTGTCT
GCACATTTATACATTTCCATTTGTGCAACGAAAATCTCAATCATTAGGCGTGTTCTTAAAACTG
AGATTGCAGGACTGGATTTCTTTAGGTTGATATTTTCCTGCTGCATTTATCTTGTTATACCAAT
TCCTCTTCATGTTTAATGCAATTCAGTTTGCATGCTATCTTGACTTATCTAGCACAACAAACTT
AAAATGACCATTTTTTTTGGGCTATATATGCTAGTTGATCGGACTTCTAAATGGATACATAGAG
GATTCTAATGTGCAACCAGATGATTTGCCTACTCATTCGCTGGAGCTCAGGCCTTACATCGAAG
AACCTACTCCAAGGATCATTCTGTCATCACACGTTAATGGAAACCATTGTCCAAAATTTCGACA
TGATTTTCAGCTTTCAAAGCTGGAATCTGTCGATACTTACTGGGAAACATTAAAGTACAGTTGT
GTAACAGCAGGCTTGGCTGAGACAAGTGCCTTCCCTGGCTGCTGCATCCCTGAG
Conservation Information
Conserved circRNAs osa_circ_014452
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2932
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021