Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d010026_circ_g.1 |
ID in PlantcircBase | zma_circ_009655 |
Alias | zma_circ_0003024 |
Organism | Zea mays |
Position | chr8: 95743213-95745022 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d010026 |
Parent gene annotation |
Lysophospholipid acyltransferase LPEAT1 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d010026_T001:5 Zm00001d010026_T002:5 |
Conservation Information | |
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Conserved circRNAs | osa_circ_027560* |
PMCS | 0.157206279 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
95744964-95743215(+) 95744937-95743215(-) 95743240-95744764(-) |
Potential amino acid sequence |
MIRHNCPRPFDFFRLVHMAIP*(+) MSASFPSFVAKRSVARLPLVGLISKCLGCIFVQRESKTPDFKGVSGAVSERIHRAHQQKNAPMM LLFPEGTTTNGDYLLPFKTGAFLAKAPVQPVILRYPYKRFNAAWDSMSGDGHVDQSKEIERPGA IVSNHVSYVDILYHMSASFPSFVAKRSVARLPLVGLISKCLGCIFVQRESKTPDFKGVSGAVSE RIHRAHQQKNAPMMLLFPEGTTTNGDYLLPFKTGAFLAKAPVQPVILRYPYKRFNAAWDSMSGD GHVDQSKEIERPGAIVSNHVSYVDILYHMSASFPSFVAKRSVARLPLVGLISKCLGCIFVQRES KTPDFKGVSGAVSERIHRAHQQKNAPMMLLFPEGTTTNGDYLLPFKTGAFLAKAPVQPVILRYP YKRFNAAWDSMSGDGHVDQSKEIERPGAIVSNHVSYVDILYHMSASFPSFVAKRSVARLPLVGL ISKCLGCIFVQRESKTPDFKGVSGAVSERIHRAHQQKNAPMMLLFPEGTTTNGDYLLPFKTGAF LAKAPVQPVILRYPYKRFNAAWDSMSG(-) MQHGIPCQGMAMWTSLKKSKGLGQLCLIMYLMWIFFITCQPLFLVLLLRDQWLDCL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |