Detail information of AT2G05710_circ_g.8


General Information
CircRNA Name AT2G05710_circ_g.8
ID in PlantcircBase ath_circ_012894
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2143627-2144923  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G05710
Parent gene annotation Aconitate hydratase 3, mitochondrial
Parent gene strand +
Alternative splicing AT2G05710_circ_g.6 AT2G05710_circ_g.7 AT2G05710_circ_g.9 AT2G05710_circ_g.10 AT2G05710_circ_g.11 AT2G05710_circ_g.12 AT2G05710_circ_g.13 AT2G05710_circ_g.14 AT2G05710_circ_g.15 AT2G05710_circ_g.16 AT2G05710_circ_g.17
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G05710.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCCGGTAACAGGAACTTTGAGGGGCGTGTTCATCCACTAACAAGAGCCAATTACCTTGCATCT
CCTCCGTTGGTGGTTGCCTATGCTCTTGCTGGCACGgtggctatgattgaagcatatcttcggg
ctaacaatatgtttgttgactacaatgaggtaaattagccttatactttctttctttttttgtt
tcttaatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGCTATGATTGAAGCATATCTTCGGGCTAACAATATGTTTGTTGACTACAATGAGGTAAATT
AGCCTTATACTTTCTTTCTTTTTTTGTTTCTTAATCTCCTTTCAGGTTTTTATTTGACTTTGCT
TGTGAATAAATTTCAGCCTCAGCAAGACCGGGTTTACTCGTCATATCTAGAACTGAATCTGGAT
GATGTTGAACCTTGCATTTCTGGACCAAAGCGGTATGGGTTCTGTTGGTTTTTGTAATCGCGAA
GTTTATTGTCTGAATAATTGGTCATGACCATATTATTGATATCTTCTTTGCAGGCCACATGATC
GTGTTACTTTGAAGGAAATGAAAGCTGACTGGCATTCATGTCTTGACAGTAAAGTTGGGTTCAA
GGTATGTAACTGGATGTTTCACTTTGTGGATGTCTAATCTCTTAACCATTTACTCGTTCTATAG
ACTGGGTTGTTGGTGCACATTTTGGAAATCAATGTTTATTTCTGAATATTGCTATTCATTCTCC
GCAGGGTTTTGCTATACCTAAAGAGGCACAAGAAAAAGTGGTAAATTTTTCGTTCGATGGACAA
CCAGCAGAGCTTAAACATGGAAGTGTGGTGATTGCTGCAATCACAAGCTGTACTAATACATCAA
ATCCCAGCGTCATGCTTGGTGCTGGTCTTGTTGCAAAGAAGGCTTGTGACCTTGGGCTACAGGT
TGGTTTCACGAGAGCAAACTAGAAATCTATCTGATGCCTCGACATTTTCTGATCCCTTTTTCAA
AAACTTGCCTCTGTAGGTTAAGCCTTGGATAAAGACAAGTCTTGCTCCAGGCTCAGGAGTTGTT
ACAAAATACTTATTAAAGAGGTATGTCGTATTTTTATCTAGTTCTTCGTTGTTAAAGGCTAATT
CTTTCTTATGTGATGGTAAATTTAAGTGTAACATCTTACTCCATGCAGTGGATTGCAAGAATAT
CTGAATGAACAGGGTTTCAATATTGTCGGCTACGGGTGCACTACATGCATCGGGAATTCTGGGG
AAATTAATGAATCAGTGGGAGCTGCTATTACCGAAAATGGTATTATTGAGATTCCCAACTAAAC
TTACTTTGGACTTTCCATCCTTTATATTACTATTATATATAAGTAAGTAGCTGATTTGTTTTCA
ATATTTGTGTTGCTTGGTTTTAGACATTGTGGCGGCTGCTGTGCTATCCGGTAACAGGAACTTT
GAGGGGCGTGTTCATCCACTAACAAGAGCCAATTACCTTGCATCTCCTCCGTTGGTGGTTGCCT
ATGCTCTTGCTGGCACG
Conservation Information
Conserved circRNAs NA
PMCS 0.221514536
Functional Information
Coding potential Y
Potential coding position 2143633-2144920(+)
Potential amino acid sequence MIEAYLRANNMFVDYNEPQQDRVYSSYLELNLDDVEPCISGPKRPHDRVTLKEMKADWHSCLDS
KVGFKGFAIPKEAQEKVVNFSFDGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACDL
GLQVKPWIKTSLAPGSGVVTKYLLKSGLQEYLNEQGFNIVGYGCTTCIGNSGEINESVGAAITE
NDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVAMIEAYLRANNMFVDYNEPQQ
DRVYSSYLELNLDDVEPCISGPKRPHDRVTLKEMKADWHSCLDSKVGFKGFAIPKEAQEKVVNF
SFDGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACDLGLQVKPWIKTSLAPGSGVVT
KYLLKSGLQEYLNEQGFNIVGYGCTTCIGNSGEINESVGAAITENDIVAAAVLSGNRNFEGRVH
PLTRANYLASPPLVVAYALAGTVAMIEAYLRANNMFVDYNEPQQDRVYSSYLELNLDDVEPCIS
GPKRPHDRVTLKEMKADWHSCLDSKVGFKGFAIPKEAQEKVVNFSFDGQPAELKHGSVVIAAIT
SCTNTSNPSVMLGAGLVAKKACDLGLQVKPWIKTSLAPGSGVVTKYLLKSGLQEYLNEQGFNIV
GYGCTTCIGNSGEINESVGAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALA
GTVAMIEAYLRANNMFVDYNEPQQDRVYSSYLELNLDDVEPCISGPKRPHDRVTLKEMKADWHS
CLDSKVGFKGFAIPKEAQEKVVNFSFDGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKK
ACDLGLQVKPWIKTSLAPGSGVVTKYLLKSGLQEYLNEQGFNIVGYGCTTCIGNSGEINESVGA
AITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGT(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017